Wall clock time and date at job start Mon Mar 30 2020 20:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38238 * 120.41059 * 2 1 4 4 N 1.31855 * 120.79200 * 180.02562 * 3 2 1 5 5 C 1.31879 * 121.73778 * 359.76387 * 4 3 2 6 6 C 1.38308 * 120.74743 * 0.50082 * 5 4 3 7 7 Cl 1.73599 * 120.43510 * 179.77380 * 6 5 4 8 8 C 1.38607 * 120.41225 * 180.02562 * 2 1 3 9 9 C 1.50699 * 120.79463 * 359.97438 * 8 2 1 10 10 H 1.08989 * 109.47283 * 359.97438 * 9 8 2 11 11 C 1.53001 * 109.47036 * 239.97499 * 9 8 2 12 12 C 1.50700 * 109.47044 * 119.98049 * 9 8 2 13 13 H 1.08002 * 120.00045 * 359.97438 * 12 9 8 14 14 C 1.37873 * 120.00215 * 180.02562 * 12 9 8 15 15 N 1.31517 * 119.99769 * 359.97438 * 14 12 9 16 16 Si 1.86797 * 120.00311 * 179.97438 * 14 12 9 17 17 H 1.48496 * 109.47256 * 59.99847 * 16 14 12 18 18 H 1.48502 * 109.47409 * 180.02562 * 16 14 12 19 19 H 1.48509 * 109.46997 * 299.99951 * 16 14 12 20 20 H 1.09005 * 109.46592 * 269.98135 * 1 2 3 21 21 H 1.09000 * 109.47102 * 29.97878 * 1 2 3 22 22 H 1.08998 * 109.46896 * 149.98399 * 1 2 3 23 23 H 1.07993 * 119.60503 * 0.02562 * 3 2 1 24 24 H 1.07995 * 119.62795 * 180.24879 * 5 4 3 25 25 H 1.08999 * 109.47037 * 180.02562 * 11 9 8 26 26 H 1.09003 * 109.47218 * 300.00164 * 11 9 8 27 27 H 1.09001 * 109.47166 * 59.99970 * 11 9 8 28 28 H 0.96997 * 119.99880 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1922 0.0000 4 7 3.5253 1.2010 -0.0005 5 6 4.2265 0.0840 0.0036 6 6 3.5957 -1.1468 -0.0018 7 17 4.5268 -2.6121 -0.0022 8 6 2.2087 -1.1954 -0.0005 9 6 1.4828 -2.5160 -0.0005 10 1 0.4073 -2.3395 0.0004 11 6 1.8703 -3.3109 1.2481 12 6 1.8626 -3.2979 -1.2316 13 1 2.5596 -2.8801 -1.9430 14 6 1.3196 -4.5462 -1.4502 15 7 0.4706 -5.0548 -0.5841 16 14 1.7898 -5.5151 -2.9764 17 1 3.2551 -5.7561 -2.9779 18 1 1.0737 -6.8161 -2.9771 19 1 1.4139 -4.7432 -4.1881 20 1 -0.3633 -0.0003 1.0277 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5141 23 1 1.6671 2.1276 0.0004 24 1 5.3054 0.1310 0.0071 25 1 1.3456 -4.2663 1.2478 26 1 2.9459 -3.4874 1.2472 27 1 1.5956 -2.7454 2.1385 28 1 0.0888 -5.9332 -0.7377 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260429593.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:44:47 Heat of formation + Delta-G solvation = 0.327603 kcal Electronic energy + Delta-G solvation = -13526.760824 eV Core-core repulsion = 11181.560278 eV Total energy + Delta-G solvation = -2345.200547 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.28324 -37.46822 -36.69930 -34.36220 -32.98893 -30.85077 -28.11011 -27.18958 -25.02026 -23.05356 -21.68250 -18.61962 -17.78201 -17.16145 -16.51839 -16.24807 -15.42746 -14.69711 -14.53302 -14.31849 -13.86523 -13.53324 -13.38676 -13.03421 -12.84967 -12.72355 -12.48275 -12.28615 -11.97435 -11.79157 -11.61186 -10.90929 -10.51643 -10.16491 -9.94207 -9.63714 -8.06728 -6.15702 0.08869 0.34375 1.36096 1.41283 1.42747 1.49180 2.44274 2.80786 3.22673 3.57557 3.90555 3.97073 4.07948 4.26104 4.64913 4.79854 4.84934 4.87311 5.07845 5.12633 5.17758 5.31644 5.45715 5.64265 5.72713 5.95889 6.06358 6.34257 6.86847 6.92990 7.48801 8.98234 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.029316 B = 0.011437 C = 0.009798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.896116 B = 2447.607653 C = 2856.961893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.143 4.143 3 C 0.096 3.904 4 N -0.494 5.494 5 C 0.093 3.907 6 C -0.093 4.093 7 Cl -0.052 7.052 8 C -0.019 4.019 9 C 0.071 3.929 10 H 0.033 0.967 11 C -0.139 4.139 12 C -0.499 4.499 13 H 0.047 0.953 14 C 0.023 3.977 15 N -0.915 5.915 16 Si 0.938 3.062 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.274 1.274 20 H 0.080 0.920 21 H 0.095 0.905 22 H 0.057 0.943 23 H 0.192 0.808 24 H 0.178 0.822 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.016 0.984 28 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.819 8.801 1.635 9.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.145 4.145 3 C -0.060 4.060 4 N -0.202 5.202 5 C -0.064 4.064 6 C -0.121 4.121 7 Cl -0.023 7.023 8 C -0.028 4.028 9 C 0.053 3.947 10 H 0.051 0.949 11 C -0.197 4.197 12 C -0.537 4.537 13 H 0.065 0.935 14 C -0.176 4.176 15 N -0.555 5.555 16 Si 0.765 3.235 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.199 1.199 20 H 0.099 0.901 21 H 0.114 0.886 22 H 0.076 0.924 23 H 0.208 0.792 24 H 0.195 0.805 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.035 0.965 28 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.244 9.311 1.658 9.999 hybrid contribution -0.161 -1.935 -0.747 2.081 sum 3.083 7.376 0.910 8.046 Atomic orbital electron populations 1.20763 0.88675 1.03630 1.03178 1.21148 0.99118 0.92433 1.01773 1.23144 0.89620 0.98229 0.95041 1.67803 1.09052 1.29345 1.14043 1.22909 1.01283 0.85467 0.96735 1.22080 0.92923 0.89267 1.07874 1.98324 1.71802 1.35683 1.96487 1.20924 0.92566 0.97925 0.91342 1.17859 0.94889 0.87112 0.94835 0.94927 1.21885 1.01554 1.01232 0.95013 1.21068 1.25565 1.01477 1.05639 0.93479 1.25458 0.95171 0.98317 0.98638 1.69972 1.31092 1.17871 1.36518 0.85906 0.78392 0.78226 0.80978 1.20111 1.20953 1.19924 0.90124 0.88584 0.92411 0.79165 0.80511 0.92004 0.92995 0.96504 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.08 9.45 71.24 0.67 -2.41 15 2 C -0.14 -4.91 5.90 -19.78 -0.12 -5.02 15 3 C 0.10 2.86 10.86 84.69 0.92 3.78 15 4 N -0.49 -16.01 10.36 -195.75 -2.03 -18.04 15 5 C 0.09 3.10 10.99 84.70 0.93 4.03 15 6 C -0.09 -3.60 5.98 22.42 0.13 -3.46 15 7 Cl -0.05 -2.05 23.91 -2.72 -0.07 -2.11 15 8 C -0.02 -0.80 4.75 -19.64 -0.09 -0.90 15 9 C 0.07 3.42 2.20 -12.29 -0.03 3.40 15 10 H 0.03 1.66 5.62 -2.39 -0.01 1.64 15 11 C -0.14 -6.64 8.73 71.98 0.63 -6.02 15 12 C -0.50 -26.27 6.92 25.60 0.18 -26.09 15 13 H 0.05 2.52 7.33 -2.91 -0.02 2.50 15 14 C 0.02 1.22 5.30 84.65 0.45 1.67 15 15 N -0.91 -51.03 11.32 21.45 0.24 -50.79 15 16 Si 0.94 43.22 29.54 68.60 2.03 45.25 15 17 H -0.28 -12.58 7.11 99.48 0.71 -11.87 15 18 H -0.28 -12.84 7.11 99.48 0.71 -12.14 15 19 H -0.27 -12.36 7.11 99.48 0.71 -11.66 15 20 H 0.08 2.13 8.14 -2.38 -0.02 2.11 15 21 H 0.10 2.11 8.09 -2.39 -0.02 2.09 15 22 H 0.06 2.03 6.20 -2.39 -0.01 2.01 15 23 H 0.19 4.03 8.06 -2.91 -0.02 4.00 15 24 H 0.18 4.85 8.06 -2.91 -0.02 4.83 15 25 H 0.06 3.27 6.07 -2.39 -0.01 3.26 15 26 H 0.05 2.40 5.07 -2.39 -0.01 2.39 15 27 H 0.02 0.71 8.14 -2.39 -0.02 0.69 15 28 H 0.26 13.98 8.31 -92.71 -0.77 13.21 15 Total: -1.00 -58.66 246.63 5.02 -53.64 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: 1.17 Total: 3.07 kcal Atomic # 6 Polarization: -34.69 SS G_CDS: 3.68 Total: -31.02 kcal Atomic # 7 Polarization: -67.05 SS G_CDS: -1.79 Total: -68.83 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 17 Polarization: -2.05 SS G_CDS: -0.07 Total: -2.11 kcal Total: -58.66 5.02 -53.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260429593.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.969 kcal (2) G-P(sol) polarization free energy of solvation -58.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds