Wall clock time and date at job start Mon Mar 30 2020 20:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81002 * 1 3 3 C 1.76205 * 99.99805 * 2 1 4 4 N 1.32799 * 119.66196 * 180.27968 * 3 2 1 5 5 C 1.32370 * 119.45162 * 180.28090 * 4 3 2 6 6 C 1.38767 * 118.83537 * 359.44684 * 5 4 3 7 7 C 1.50698 * 120.34777 * 180.25435 * 6 5 4 8 8 H 1.09002 * 109.47201 * 154.99958 * 7 6 5 9 9 C 1.53001 * 109.47129 * 35.00483 * 7 6 5 10 10 C 1.50694 * 109.47523 * 275.00440 * 7 6 5 11 11 H 1.07999 * 119.99964 * 0.02562 * 10 7 6 12 12 C 1.37880 * 120.00499 * 179.97438 * 10 7 6 13 13 N 1.31513 * 119.99307 * 0.02562 * 12 10 7 14 14 Si 1.86797 * 120.00274 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47434 * 90.00210 * 14 12 10 16 16 H 1.48508 * 109.47058 * 210.00292 * 14 12 10 17 17 H 1.48497 * 109.46967 * 329.99998 * 14 12 10 18 18 N 1.32187 * 119.30439 * 0.28231 * 6 5 4 19 19 N 1.28735 * 120.48910 * 359.97438 * 18 6 5 20 20 H 1.09002 * 109.47174 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47256 * 299.99536 * 1 2 3 22 22 H 1.08997 * 109.47581 * 59.99823 * 1 2 3 23 23 H 1.08002 * 120.58448 * 179.73032 * 5 4 3 24 24 H 1.08997 * 109.47681 * 179.97438 * 9 7 6 25 25 H 1.08998 * 109.47028 * 300.00128 * 9 7 6 26 26 H 1.09007 * 109.47438 * 59.99630 * 9 7 6 27 27 H 0.97007 * 119.99700 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 3.3665 2.1822 -0.0056 5 6 3.5915 3.4866 0.0000 6 6 2.5074 4.3528 0.0000 7 6 2.7244 5.8441 0.0006 8 1 1.8551 6.3379 -0.4338 9 6 3.9673 6.1790 -0.8264 10 6 2.9189 6.3229 1.4162 11 1 2.8889 5.6178 2.2337 12 6 3.1363 7.6610 1.6677 13 7 3.1733 8.5196 0.6721 14 14 3.3782 8.2544 3.4223 15 1 4.8224 8.2105 3.7651 16 1 2.8822 9.6487 3.5461 17 1 2.6221 7.3759 4.3506 18 7 1.2824 3.8561 0.0001 19 7 1.0939 2.5826 -0.0004 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 4.6012 3.8700 0.0000 24 1 4.1240 7.2576 -0.8264 25 1 4.8365 5.6852 -0.3921 26 1 3.8266 5.8326 -1.8504 27 1 3.3258 9.4611 0.8490 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260475257.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:45:03 Heat of formation + Delta-G solvation = 59.864878 kcal Electronic energy + Delta-G solvation = -13003.380730 eV Core-core repulsion = 10695.098371 eV Total energy + Delta-G solvation = -2308.282359 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.17608 -35.26735 -34.45761 -32.33330 -29.91576 -28.74691 -25.71374 -24.90142 -24.68713 -20.77213 -18.39945 -18.12869 -16.56496 -15.41748 -15.23843 -14.91362 -13.99435 -13.80094 -13.48831 -12.90339 -12.64458 -11.99150 -11.66918 -11.59485 -11.28638 -11.06714 -11.00515 -10.80721 -10.51049 -10.39137 -10.09195 -9.87409 -9.11424 -8.82090 -8.50216 -7.68917 -6.20043 -4.29199 0.96123 1.18075 1.29686 2.15936 3.21424 3.28737 3.32746 3.89426 4.22327 4.31164 4.62806 4.88908 5.10410 5.13925 5.19359 5.56722 5.70571 5.80104 6.36990 6.57364 6.77514 6.89949 7.21143 7.43523 7.64098 7.83405 8.07535 8.70438 8.86259 9.36608 10.85682 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.047929 B = 0.006698 C = 0.006430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.053316 B = 4179.262262 C = 4353.764115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.006 6.006 3 C 0.193 3.807 4 N -0.460 5.460 5 C 0.138 3.862 6 C 0.072 3.928 7 C 0.091 3.909 8 H 0.057 0.943 9 C -0.140 4.140 10 C -0.514 4.514 11 H 0.055 0.945 12 C 0.069 3.931 13 N -0.884 5.884 14 Si 0.900 3.100 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.274 1.274 18 N -0.192 5.192 19 N -0.288 5.288 20 H 0.105 0.895 21 H 0.091 0.909 22 H 0.090 0.910 23 H 0.190 0.810 24 H 0.097 0.903 25 H 0.035 0.965 26 H 0.014 0.986 27 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.057 -11.331 -1.965 11.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.223 5.777 3 C -0.185 4.185 4 N -0.181 5.181 5 C -0.043 4.043 6 C -0.078 4.078 7 C 0.070 3.930 8 H 0.075 0.925 9 C -0.199 4.199 10 C -0.552 4.552 11 H 0.073 0.927 12 C -0.134 4.134 13 N -0.521 5.521 14 Si 0.727 3.273 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.199 1.199 18 N -0.041 5.041 19 N -0.137 5.137 20 H 0.124 0.876 21 H 0.110 0.890 22 H 0.109 0.891 23 H 0.207 0.793 24 H 0.116 0.884 25 H 0.054 0.946 26 H 0.033 0.967 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.362 -12.582 -2.016 12.815 hybrid contribution 0.174 1.835 0.997 2.095 sum -1.188 -10.747 -1.020 10.861 Atomic orbital electron populations 1.23552 0.94198 1.06173 1.07435 1.85479 1.06827 0.93688 1.91660 1.26209 0.90271 1.01988 1.00020 1.69086 1.20965 1.16341 1.11729 1.24228 1.02448 0.87897 0.89722 1.24607 0.90225 1.02733 0.90269 1.17868 0.96965 0.80447 0.97702 0.92476 1.21925 0.97269 1.05464 0.95199 1.20817 1.50911 0.93139 0.90375 0.92655 1.24889 0.94546 0.96372 0.97564 1.69858 1.48515 1.03039 1.30709 0.86456 0.78503 0.78151 0.84169 1.20391 1.20901 1.19854 1.73593 1.21316 1.03172 1.06040 1.74107 1.28297 0.98647 1.12683 0.87648 0.89036 0.89077 0.79324 0.88400 0.94634 0.96667 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.64 101.05 0.97 -0.62 15 2 S -0.01 -0.08 22.91 -107.50 -2.46 -2.54 15 3 C 0.19 3.62 7.92 -90.45 -0.72 2.91 15 4 N -0.46 -8.87 10.51 -13.28 -0.14 -9.01 15 5 C 0.14 2.68 10.41 -17.12 -0.18 2.50 15 6 C 0.07 1.57 5.81 -82.24 -0.48 1.10 15 7 C 0.09 2.17 2.65 -92.93 -0.25 1.93 15 8 H 0.06 1.50 8.14 -51.93 -0.42 1.07 15 9 C -0.14 -3.03 8.41 37.16 0.31 -2.71 15 10 C -0.51 -13.40 8.55 -34.44 -0.29 -13.69 15 11 H 0.06 1.47 7.74 -52.49 -0.41 1.07 15 12 C 0.07 1.81 5.30 -17.82 -0.09 1.71 15 13 N -0.88 -23.61 11.32 55.43 0.63 -22.99 15 14 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 15 15 H -0.28 -6.21 7.11 56.52 0.40 -5.80 15 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 17 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 18 N -0.19 -4.33 11.56 33.66 0.39 -3.95 15 19 N -0.29 -5.86 10.33 30.23 0.31 -5.55 15 20 H 0.11 0.82 8.14 -51.92 -0.42 0.39 15 21 H 0.09 1.08 8.12 -51.92 -0.42 0.65 15 22 H 0.09 1.04 8.12 -51.92 -0.42 0.62 15 23 H 0.19 3.18 6.42 -52.49 -0.34 2.84 15 24 H 0.10 2.34 6.07 -51.93 -0.32 2.02 15 25 H 0.03 0.69 6.56 -51.93 -0.34 0.35 15 26 H 0.01 0.28 8.14 -51.92 -0.42 -0.14 15 27 H 0.27 6.75 8.31 -40.82 -0.34 6.41 15 LS Contribution 251.94 15.07 3.80 3.80 Total: -1.00 -28.22 251.94 -5.86 -34.09 By element: Atomic # 1 Polarization: 0.25 SS G_CDS: -2.64 Total: -2.39 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -0.72 Total: -6.88 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 1.19 Total: -41.49 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -2.46 Total: -2.54 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.22 -5.86 -34.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260475257.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.951 kcal (2) G-P(sol) polarization free energy of solvation -28.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds