Wall clock time and date at job start Mon Mar 30 2020 20:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81002 * 1 3 3 C 1.76205 * 99.99805 * 2 1 4 4 N 1.32799 * 119.66196 * 180.27968 * 3 2 1 5 5 C 1.32370 * 119.45162 * 180.28090 * 4 3 2 6 6 C 1.38767 * 118.83537 * 359.44684 * 5 4 3 7 7 C 1.50698 * 120.34777 * 180.25435 * 6 5 4 8 8 H 1.09002 * 109.47201 * 154.99958 * 7 6 5 9 9 C 1.53001 * 109.47129 * 35.00483 * 7 6 5 10 10 C 1.50694 * 109.47523 * 275.00440 * 7 6 5 11 11 H 1.07999 * 119.99964 * 0.02562 * 10 7 6 12 12 C 1.37880 * 120.00499 * 179.97438 * 10 7 6 13 13 N 1.31513 * 119.99307 * 0.02562 * 12 10 7 14 14 Si 1.86797 * 120.00274 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47434 * 90.00210 * 14 12 10 16 16 H 1.48508 * 109.47058 * 210.00292 * 14 12 10 17 17 H 1.48497 * 109.46967 * 329.99998 * 14 12 10 18 18 N 1.32187 * 119.30439 * 0.28231 * 6 5 4 19 19 N 1.28735 * 120.48910 * 359.97438 * 18 6 5 20 20 H 1.09002 * 109.47174 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47256 * 299.99536 * 1 2 3 22 22 H 1.08997 * 109.47581 * 59.99823 * 1 2 3 23 23 H 1.08002 * 120.58448 * 179.73032 * 5 4 3 24 24 H 1.08997 * 109.47681 * 179.97438 * 9 7 6 25 25 H 1.08998 * 109.47028 * 300.00128 * 9 7 6 26 26 H 1.09007 * 109.47438 * 59.99630 * 9 7 6 27 27 H 0.97007 * 119.99700 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 3.3665 2.1822 -0.0056 5 6 3.5915 3.4866 0.0000 6 6 2.5074 4.3528 0.0000 7 6 2.7244 5.8441 0.0006 8 1 1.8551 6.3379 -0.4338 9 6 3.9673 6.1790 -0.8264 10 6 2.9189 6.3229 1.4162 11 1 2.8889 5.6178 2.2337 12 6 3.1363 7.6610 1.6677 13 7 3.1733 8.5196 0.6721 14 14 3.3782 8.2544 3.4223 15 1 4.8224 8.2105 3.7651 16 1 2.8822 9.6487 3.5461 17 1 2.6221 7.3759 4.3506 18 7 1.2824 3.8561 0.0001 19 7 1.0939 2.5826 -0.0004 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 4.6012 3.8700 0.0000 24 1 4.1240 7.2576 -0.8264 25 1 4.8365 5.6852 -0.3921 26 1 3.8266 5.8326 -1.8504 27 1 3.3258 9.4611 0.8490 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260475257.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:45:03 Heat of formation + Delta-G solvation = 42.266862 kcal Electronic energy + Delta-G solvation = -13004.143837 eV Core-core repulsion = 10695.098371 eV Total energy + Delta-G solvation = -2309.045466 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.73028 -37.04981 -36.00156 -34.15777 -31.56171 -29.77449 -27.50558 -26.60252 -26.27446 -22.56306 -19.90625 -19.56276 -18.51486 -17.07948 -16.80868 -16.40345 -15.51129 -15.23619 -14.79844 -14.39437 -13.84225 -13.53734 -13.34520 -13.19435 -12.95555 -12.81948 -12.77641 -12.33449 -12.24776 -11.87710 -11.71405 -11.66706 -10.90804 -10.59937 -10.26872 -8.90988 -8.17338 -6.33515 -0.57300 -0.40114 0.03879 1.10185 1.42016 1.44207 1.53140 2.28930 2.44713 2.72539 3.08366 3.11268 3.37074 3.97585 4.13425 4.28832 4.34680 4.73288 4.86134 4.93368 5.07255 5.09586 5.48554 5.64596 5.74298 5.97673 6.16588 6.70003 7.28435 7.35496 8.87131 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.047929 B = 0.006698 C = 0.006430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.053316 B = 4179.262262 C = 4353.764115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S 0.028 5.972 3 C 0.182 3.818 4 N -0.463 5.463 5 C 0.148 3.852 6 C 0.053 3.947 7 C 0.095 3.905 8 H 0.021 0.979 9 C -0.130 4.130 10 C -0.529 4.529 11 H 0.044 0.956 12 C 0.028 3.972 13 N -0.906 5.906 14 Si 0.957 3.043 15 H -0.267 1.267 16 H -0.280 1.280 17 H -0.279 1.279 18 N -0.220 5.220 19 N -0.300 5.300 20 H 0.146 0.854 21 H 0.085 0.915 22 H 0.088 0.912 23 H 0.214 0.786 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.033 0.967 27 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.615 -12.993 -1.581 13.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.257 5.743 3 C -0.194 4.194 4 N -0.185 5.185 5 C -0.033 4.033 6 C -0.099 4.099 7 C 0.074 3.926 8 H 0.039 0.961 9 C -0.188 4.188 10 C -0.568 4.568 11 H 0.062 0.938 12 C -0.172 4.172 13 N -0.544 5.544 14 Si 0.782 3.218 15 H -0.192 1.192 16 H -0.206 1.206 17 H -0.204 1.204 18 N -0.069 5.069 19 N -0.150 5.150 20 H 0.164 0.836 21 H 0.104 0.896 22 H 0.107 0.893 23 H 0.231 0.769 24 H 0.092 0.908 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.924 -14.269 -1.639 14.393 hybrid contribution -0.053 2.171 0.853 2.333 sum -0.977 -12.098 -0.786 12.163 Atomic orbital electron populations 1.23733 0.91832 1.08648 1.07004 1.85435 1.09337 0.89373 1.90133 1.27158 0.89879 1.04354 0.98019 1.69250 1.21132 1.15940 1.12187 1.24511 1.02704 0.87818 0.88239 1.24314 0.91013 1.01995 0.92547 1.17657 0.96439 0.81742 0.96783 0.96097 1.21763 0.96938 1.04025 0.96097 1.21003 1.51147 0.93342 0.91267 0.93805 1.25565 0.94312 0.96478 1.00884 1.69964 1.48905 1.03256 1.32234 0.85572 0.78771 0.77452 0.79961 1.19240 1.20551 1.20385 1.73448 1.22158 1.04678 1.06577 1.74073 1.28849 0.97932 1.14095 0.83569 0.89620 0.89330 0.76913 0.90792 0.92634 0.94828 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.64 113.37 1.09 -1.66 15 2 S 0.03 0.71 22.91 -56.49 -1.29 -0.59 15 3 C 0.18 6.59 7.92 180.29 1.43 8.02 15 4 N -0.46 -17.17 10.51 -195.93 -2.06 -19.23 15 5 C 0.15 5.59 10.41 84.74 0.88 6.47 15 6 C 0.05 2.34 5.81 42.63 0.25 2.59 15 7 C 0.09 4.61 2.65 -12.29 -0.03 4.58 15 8 H 0.02 1.15 8.14 -2.39 -0.02 1.13 15 9 C -0.13 -5.58 8.41 71.98 0.61 -4.97 15 10 C -0.53 -27.94 8.55 25.60 0.22 -27.72 15 11 H 0.04 2.36 7.74 -2.91 -0.02 2.34 15 12 C 0.03 1.49 5.30 84.66 0.45 1.94 15 13 N -0.91 -48.90 11.32 21.45 0.24 -48.65 15 14 Si 0.96 41.87 29.54 68.60 2.03 43.89 15 15 H -0.27 -11.17 7.11 99.48 0.71 -10.46 15 16 H -0.28 -12.02 7.11 99.48 0.71 -11.31 15 17 H -0.28 -12.31 7.11 99.48 0.71 -11.61 15 18 N -0.22 -10.05 11.56 -47.41 -0.55 -10.60 15 19 N -0.30 -12.07 10.33 -58.26 -0.60 -12.67 15 20 H 0.15 1.64 8.14 -2.39 -0.02 1.62 15 21 H 0.08 1.82 8.12 -2.40 -0.02 1.80 15 22 H 0.09 1.82 8.12 -2.40 -0.02 1.80 15 23 H 0.21 6.75 6.42 -2.91 -0.02 6.73 15 24 H 0.07 3.55 6.07 -2.39 -0.01 3.54 15 25 H 0.05 2.10 6.56 -2.39 -0.02 2.09 15 26 H 0.03 1.27 8.14 -2.38 -0.02 1.25 15 27 H 0.27 13.68 8.31 -92.70 -0.77 12.91 15 Total: -1.00 -60.62 251.94 3.84 -56.78 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: 1.18 Total: 1.83 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: 4.89 Total: -10.77 kcal Atomic # 7 Polarization: -88.19 SS G_CDS: -2.97 Total: -91.15 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -1.29 Total: -0.59 kcal Total: -60.62 3.84 -56.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260475257.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.047 kcal (2) G-P(sol) polarization free energy of solvation -60.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds