Wall clock time and date at job start Mon Mar 30 2020 20:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47205 * 2 1 4 4 C 1.38329 * 119.91907 * 265.02450 * 3 2 1 5 5 C 1.38028 * 120.10312 * 179.97438 * 4 3 2 6 6 C 1.39112 * 119.93840 * 0.02562 * 5 4 3 7 7 N 1.39300 * 120.08330 * 179.97438 * 6 5 4 8 8 C 1.36854 * 119.99695 * 180.02562 * 7 6 5 9 9 H 1.07998 * 120.00381 * 359.97438 * 8 7 6 10 10 C 1.38794 * 119.99777 * 180.02562 * 8 7 6 11 11 N 1.31599 * 119.99925 * 180.02562 * 10 8 7 12 12 Si 1.86794 * 120.00036 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.47250 * 90.00330 * 12 10 8 14 14 H 1.48503 * 109.47185 * 210.00378 * 12 10 8 15 15 H 1.48502 * 109.47272 * 329.99919 * 12 10 8 16 16 C 1.39037 * 119.83089 * 359.70807 * 6 5 4 17 17 C 1.38186 * 119.90030 * 0.56446 * 16 6 5 18 18 Cl 1.73599 * 119.97371 * 179.73286 * 17 16 6 19 19 H 1.08997 * 109.47213 * 59.99808 * 1 2 3 20 20 H 1.09004 * 109.47523 * 179.97438 * 1 2 3 21 21 H 1.09007 * 109.46850 * 299.99373 * 1 2 3 22 22 H 1.09001 * 109.46830 * 240.00173 * 2 1 3 23 23 H 1.08996 * 109.47094 * 120.00733 * 2 1 3 24 24 H 1.07999 * 119.95219 * 0.02562 * 4 3 2 25 25 H 1.08005 * 120.03233 * 180.02562 * 5 4 3 26 26 H 0.96997 * 120.00466 * 359.97438 * 7 6 5 27 27 H 0.96998 * 119.99838 * 180.02562 * 11 10 8 28 28 H 1.08000 * 120.04947 * 180.32052 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3604 2.0366 -1.1944 5 6 2.8203 3.3380 -1.1989 6 6 2.9547 4.0310 -0.0002 7 7 3.4191 5.3443 -0.0011 8 6 3.5511 6.0242 1.1792 9 1 3.2948 5.5427 2.1114 10 6 4.0133 7.3329 1.1783 11 7 4.1407 7.9865 2.3133 12 14 4.4559 8.1659 -0.4340 13 1 3.2580 8.8511 -0.9824 14 1 5.5313 9.1623 -0.1975 15 1 4.9305 7.1464 -1.4040 16 6 2.6189 3.4113 1.1983 17 6 2.1645 2.1063 1.1954 18 17 1.7513 1.3284 2.6914 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 2.2556 1.4986 -2.1250 25 1 3.0757 3.8178 -2.1322 26 1 3.6497 5.7766 -0.8382 27 1 4.4634 8.9013 2.3126 28 1 2.7169 3.9477 2.1306 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575469357.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:46:09 Heat of formation + Delta-G solvation = -7.139271 kcal Electronic energy + Delta-G solvation = -12909.260547 eV Core-core repulsion = 10563.736212 eV Total energy + Delta-G solvation = -2345.524335 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.40362 -37.76361 -36.84574 -34.62198 -33.25799 -31.44120 -29.28994 -26.34790 -24.06288 -23.40797 -21.50184 -20.11815 -18.38425 -16.90635 -16.40430 -16.03438 -15.34179 -15.12073 -14.74547 -14.38128 -14.31771 -13.99344 -13.68027 -13.26310 -12.80035 -12.73566 -12.56580 -12.15328 -12.01617 -11.92771 -11.56778 -11.48358 -11.38090 -10.61622 -9.54697 -8.58055 -8.43807 -5.80101 0.53460 0.76442 1.26783 1.33282 1.34964 1.38531 2.18712 2.78666 3.11909 3.24468 4.07446 4.16569 4.38922 4.54248 4.68962 4.78374 4.79166 5.00624 5.09527 5.18897 5.24987 5.43024 5.52366 5.61324 5.65458 5.83714 5.90500 6.20226 6.65164 7.32063 7.42922 8.71952 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.041615 B = 0.007456 C = 0.006473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.666392 B = 3754.523297 C = 4324.800535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.068 4.068 3 C -0.180 4.180 4 C -0.043 4.043 5 C -0.225 4.225 6 C 0.203 3.797 7 N -0.606 5.606 8 C -0.310 4.310 9 H 0.079 0.921 10 C -0.020 4.020 11 N -0.935 5.935 12 Si 0.955 3.045 13 H -0.263 1.263 14 H -0.277 1.277 15 H -0.243 1.243 16 C -0.230 4.230 17 C 0.020 3.980 18 Cl -0.085 7.085 19 H 0.055 0.945 20 H 0.070 0.930 21 H 0.038 0.962 22 H 0.087 0.913 23 H 0.063 0.937 24 H 0.157 0.843 25 H 0.135 0.865 26 H 0.388 0.612 27 H 0.277 0.723 28 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.109 -12.461 -8.670 15.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 C -0.185 4.185 4 C -0.062 4.062 5 C -0.249 4.249 6 C 0.089 3.911 7 N -0.218 5.218 8 C -0.440 4.440 9 H 0.097 0.903 10 C -0.218 4.218 11 N -0.574 5.574 12 Si 0.777 3.223 13 H -0.188 1.188 14 H -0.202 1.202 15 H -0.167 1.167 16 C -0.255 4.255 17 C -0.007 4.007 18 Cl -0.056 7.056 19 H 0.075 0.925 20 H 0.089 0.911 21 H 0.057 0.943 22 H 0.105 0.895 23 H 0.081 0.919 24 H 0.175 0.825 25 H 0.153 0.847 26 H 0.223 0.777 27 H 0.086 0.914 28 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.031 -12.126 -8.226 15.197 hybrid contribution 0.405 1.185 0.140 1.260 sum -3.626 -10.941 -8.087 14.080 Atomic orbital electron populations 1.21723 0.94832 1.01956 1.01453 1.20355 0.96173 0.90960 1.02990 1.19536 1.09610 0.98569 0.90757 1.20840 0.94851 0.93076 0.97435 1.20736 1.11703 0.96915 0.95559 1.17919 0.94210 0.84879 0.94098 1.40919 1.63568 1.09966 1.07302 1.19228 1.41692 0.96337 0.86703 0.90333 1.25843 0.97693 0.96830 1.01480 1.69842 1.47348 1.12514 1.27737 0.85459 0.79016 0.79201 0.78580 1.18782 1.20209 1.16735 1.20334 1.12448 0.95168 0.97554 1.20547 1.01058 0.92437 0.86649 1.98291 1.92171 1.80789 1.34346 0.92543 0.91075 0.94272 0.89482 0.91863 0.82549 0.84693 0.77655 0.91395 0.88235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 9.89 71.98 0.71 -2.40 15 2 C -0.07 -1.61 5.57 29.85 0.17 -1.45 15 3 C -0.18 -5.61 5.14 -19.80 -0.10 -5.71 15 4 C -0.04 -1.25 9.67 22.24 0.22 -1.03 15 5 C -0.23 -7.63 9.90 22.43 0.22 -7.41 15 6 C 0.20 8.69 6.62 38.36 0.25 8.94 15 7 N -0.61 -28.18 5.24 -184.29 -0.97 -29.14 15 8 C -0.31 -17.05 10.04 84.04 0.84 -16.21 15 9 H 0.08 4.80 5.91 -2.91 -0.02 4.78 15 10 C -0.02 -1.09 5.50 84.86 0.47 -0.63 15 11 N -0.93 -55.05 13.97 21.65 0.30 -54.75 15 12 Si 0.96 39.99 27.73 68.60 1.90 41.89 15 13 H -0.26 -10.63 7.11 99.48 0.71 -9.92 15 14 H -0.28 -11.54 7.11 99.48 0.71 -10.83 15 15 H -0.24 -9.05 6.52 99.48 0.65 -8.40 15 16 C -0.23 -10.15 9.09 22.45 0.20 -9.95 15 17 C 0.02 0.76 6.31 22.30 0.14 0.90 15 18 Cl -0.08 -2.85 27.14 -2.72 -0.07 -2.92 15 19 H 0.06 1.18 8.14 -2.39 -0.02 1.16 15 20 H 0.07 1.23 8.14 -2.39 -0.02 1.21 15 21 H 0.04 0.98 7.89 -2.38 -0.02 0.96 15 22 H 0.09 1.66 8.05 -2.39 -0.02 1.64 15 23 H 0.06 1.56 7.11 -2.39 -0.02 1.54 15 24 H 0.16 3.24 8.06 -2.91 -0.02 3.21 15 25 H 0.14 3.86 8.06 -2.91 -0.02 3.84 15 26 H 0.39 16.13 5.76 -92.71 -0.53 15.59 15 27 H 0.28 15.13 8.31 -92.71 -0.77 14.36 15 28 H 0.10 4.97 5.96 -2.91 -0.02 4.95 15 Total: -1.00 -60.63 253.93 4.87 -55.76 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 0.58 Total: 24.11 kcal Atomic # 6 Polarization: -38.06 SS G_CDS: 3.12 Total: -34.94 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -0.66 Total: -83.90 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 1.90 Total: 41.89 kcal Atomic # 17 Polarization: -2.85 SS G_CDS: -0.07 Total: -2.92 kcal Total: -60.63 4.87 -55.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575469357.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.619 kcal (2) G-P(sol) polarization free energy of solvation -60.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds