Wall clock time and date at job start Mon Mar 30 2020 20:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.47008 * 2 1 4 4 C 1.38597 * 119.82506 * 90.00191 * 3 2 1 5 5 C 1.39163 * 120.44902 * 179.97438 * 4 3 2 6 6 N 1.39774 * 119.95921 * 180.02562 * 5 4 3 7 7 C 1.38476 * 120.08905 * 359.97438 * 5 4 3 8 8 Cl 1.73594 * 120.18214 * 180.02562 * 7 5 4 9 9 C 1.40692 * 119.64243 * 0.02838 * 7 5 4 10 10 C 1.41358 * 120.21914 * 179.97438 * 9 7 5 11 11 H 1.07997 * 120.00291 * 138.49587 * 10 9 7 12 12 C 1.39935 * 119.99839 * 318.49905 * 10 9 7 13 13 N 1.30841 * 119.99900 * 153.78054 * 12 10 9 14 14 Si 1.86801 * 119.99991 * 333.78085 * 12 10 9 15 15 H 1.48503 * 109.46951 * 264.81467 * 14 12 10 16 16 H 1.48500 * 109.47226 * 24.81132 * 14 12 10 17 17 H 1.48494 * 109.46902 * 144.81636 * 14 12 10 18 18 C 1.37588 * 119.82025 * 270.30051 * 3 2 1 19 19 H 1.09005 * 109.46897 * 60.00124 * 1 2 3 20 20 H 1.09001 * 109.47177 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47389 * 300.00034 * 1 2 3 22 22 H 1.09000 * 109.47066 * 239.99261 * 2 1 3 23 23 H 1.09005 * 109.46897 * 119.99876 * 2 1 3 24 24 H 1.08003 * 119.77335 * 359.97438 * 4 3 2 25 25 H 0.96995 * 120.00451 * 179.97438 * 6 5 4 26 26 H 0.97003 * 120.00097 * 359.97302 * 6 5 4 27 27 H 0.96996 * 119.99432 * 179.97438 * 13 12 10 28 28 H 1.08000 * 120.05550 * 0.02562 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2621 2.0707 1.2024 5 6 2.7264 3.3825 1.2176 6 7 2.9552 4.0279 2.4361 7 6 2.9632 4.0489 0.0270 8 17 3.5430 5.6851 0.0431 9 6 2.7311 3.3929 -1.1957 10 6 2.9681 4.0618 -2.4183 11 1 3.4408 3.5395 -3.2368 12 6 2.5903 5.4009 -2.5678 13 7 3.2181 6.1661 -3.4235 14 14 1.1897 6.0959 -1.5457 15 1 -0.0731 6.0258 -2.3239 16 1 1.0468 5.3034 -0.2980 17 1 1.4820 7.5108 -1.2027 18 6 2.2545 2.0679 -1.1937 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 2.0796 1.5555 2.1339 25 1 3.2792 4.9421 2.4474 26 1 2.7900 3.5616 3.2705 27 1 2.9560 7.0942 -3.5273 28 1 2.0688 1.5587 -2.1278 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575715421.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:46:13 Heat of formation + Delta-G solvation = -3.213600 kcal Electronic energy + Delta-G solvation = -13423.212257 eV Core-core repulsion = 11077.858152 eV Total energy + Delta-G solvation = -2345.354105 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.33136 -35.41837 -34.33697 -33.80651 -32.00384 -29.19740 -27.28555 -25.19749 -23.13231 -20.53567 -19.98776 -17.46749 -16.09864 -15.62195 -15.05659 -14.60208 -13.95214 -13.49748 -13.03087 -12.87552 -12.55012 -12.17104 -11.89805 -11.46054 -11.35994 -10.99369 -10.75793 -10.41922 -10.21720 -9.89682 -9.75442 -9.36020 -9.04839 -8.74749 -7.35836 -6.82594 -6.56647 -4.42839 2.53928 2.81142 3.24929 3.27607 3.43098 3.68690 4.16610 4.54113 4.65955 5.26115 5.54441 5.55926 5.90731 6.13601 6.22371 6.28632 6.36580 6.58502 6.66228 6.74279 6.97612 7.21422 7.31380 7.69000 7.76426 7.95610 8.24775 8.44708 8.50529 8.68798 8.87294 10.15532 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.028796 B = 0.012851 C = 0.010463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.125612 B = 2178.365156 C = 2675.575253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 C -0.019 4.019 4 C -0.292 4.292 5 C 0.252 3.748 6 N -0.888 5.888 7 C -0.197 4.197 8 Cl -0.099 7.099 9 C 0.132 3.868 10 C -0.468 4.468 11 H 0.094 0.906 12 C 0.110 3.890 13 N -0.796 5.796 14 Si 0.887 3.113 15 H -0.286 1.286 16 H -0.233 1.233 17 H -0.283 1.283 18 C -0.230 4.230 19 H 0.056 0.944 20 H 0.046 0.954 21 H 0.052 0.948 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.098 0.902 25 H 0.391 0.609 26 H 0.388 0.612 27 H 0.282 0.718 28 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.045 -4.337 7.448 9.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 C -0.020 4.020 4 C -0.316 4.316 5 C 0.148 3.852 6 N -0.429 5.429 7 C -0.229 4.229 8 Cl -0.071 7.071 9 C 0.128 3.872 10 C -0.496 4.496 11 H 0.112 0.888 12 C -0.111 4.111 13 N -0.419 5.419 14 Si 0.713 3.287 15 H -0.215 1.215 16 H -0.156 1.156 17 H -0.209 1.209 18 C -0.251 4.251 19 H 0.075 0.925 20 H 0.065 0.935 21 H 0.071 0.929 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.116 0.884 25 H 0.220 0.780 26 H 0.214 0.786 27 H 0.092 0.908 28 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.916 -3.998 7.222 8.755 hybrid contribution -0.401 0.920 0.656 1.199 sum -3.317 -3.077 7.878 9.085 Atomic orbital electron populations 1.21710 0.95623 1.00408 1.02241 1.20457 0.95528 0.94270 1.01415 1.19237 0.95830 0.93857 0.93046 1.19598 1.21051 0.94288 0.96649 1.17210 0.92472 0.91193 0.84309 1.42479 1.78125 1.17353 1.04940 1.20332 1.22237 0.86722 0.93624 1.98121 1.88084 1.23261 1.97624 1.17264 0.87431 0.91486 0.91029 1.19217 1.36246 0.95046 0.99074 0.88810 1.26038 0.95972 0.95685 0.93388 1.69778 1.33963 1.07120 1.31046 0.86391 0.80496 0.78842 0.82952 1.21461 1.15563 1.20906 1.20789 1.11708 0.96782 0.95802 0.92462 0.93480 0.92910 0.91800 0.92239 0.88403 0.78046 0.78555 0.90771 0.87756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.89 37.16 0.37 -1.69 15 2 C -0.08 -1.27 6.05 -27.88 -0.17 -1.44 15 3 C -0.02 -0.38 5.12 -104.73 -0.54 -0.92 15 4 C -0.29 -5.95 9.54 -39.11 -0.37 -6.32 15 5 C 0.25 5.42 6.74 -83.81 -0.57 4.86 15 6 N -0.89 -15.52 9.04 32.40 0.29 -15.23 15 7 C -0.20 -4.79 4.38 -38.57 -0.17 -4.96 15 8 Cl -0.10 -2.31 21.32 -51.86 -1.11 -3.42 15 9 C 0.13 3.37 4.68 -106.81 -0.50 2.87 15 10 C -0.47 -12.81 9.21 -37.76 -0.35 -13.16 15 11 H 0.09 2.68 8.06 -52.49 -0.42 2.25 15 12 C 0.11 2.96 4.17 -17.34 -0.07 2.89 15 13 N -0.80 -21.64 13.93 55.55 0.77 -20.86 15 14 Si 0.89 21.64 24.28 -169.99 -4.13 17.51 15 15 H -0.29 -6.89 7.11 56.52 0.40 -6.48 15 16 H -0.23 -5.79 5.46 56.52 0.31 -5.48 15 17 H -0.28 -6.75 7.11 56.52 0.40 -6.34 15 18 C -0.23 -5.30 9.43 -38.85 -0.37 -5.66 15 19 H 0.06 0.87 8.14 -51.93 -0.42 0.44 15 20 H 0.05 0.56 8.14 -51.93 -0.42 0.14 15 21 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 22 H 0.06 0.97 8.08 -51.93 -0.42 0.55 15 23 H 0.06 0.87 8.08 -51.93 -0.42 0.45 15 24 H 0.10 1.75 8.06 -52.48 -0.42 1.33 15 25 H 0.39 6.63 7.49 -40.82 -0.31 6.33 15 26 H 0.39 5.52 8.84 -40.82 -0.36 5.15 15 27 H 0.28 7.05 8.30 -40.82 -0.34 6.72 15 28 H 0.10 2.28 8.06 -52.49 -0.42 1.86 15 LS Contribution 246.87 15.07 3.72 3.72 Total: -1.00 -28.12 246.87 -6.45 -34.57 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -3.27 Total: 7.24 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -2.73 Total: -23.53 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 1.07 Total: -36.09 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.13 Total: 17.51 kcal Atomic # 17 Polarization: -2.31 SS G_CDS: -1.11 Total: -3.42 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -28.12 -6.45 -34.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715421.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.353 kcal (2) G-P(sol) polarization free energy of solvation -28.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds