Wall clock time and date at job start Mon Mar 30 2020 20:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.46853 * 2 1 4 4 C 1.39314 * 119.79501 * 89.99738 * 3 2 1 5 5 N 1.39677 * 119.94470 * 359.97438 * 4 3 2 6 6 C 1.38286 * 120.10778 * 179.97438 * 4 3 2 7 7 C 1.40604 * 119.70383 * 0.02562 * 6 4 3 8 8 C 1.41405 * 120.20117 * 179.97438 * 7 6 4 9 9 H 1.08004 * 120.00061 * 204.40305 * 8 7 6 10 10 C 1.39928 * 120.00158 * 24.40058 * 8 7 6 11 11 N 1.30832 * 119.99771 * 17.84112 * 10 8 7 12 12 Si 1.86804 * 120.00227 * 197.84399 * 10 8 7 13 13 H 1.48501 * 109.47158 * 89.99936 * 12 10 8 14 14 H 1.48489 * 109.47073 * 210.00166 * 12 10 8 15 15 H 1.48500 * 109.46926 * 330.00393 * 12 10 8 16 16 C 1.40728 * 119.59823 * 359.97438 * 7 6 4 17 17 C 1.37812 * 119.87793 * 0.02562 * 16 7 6 18 18 Cl 1.73605 * 119.84718 * 180.02562 * 17 16 7 19 19 H 1.09002 * 109.46932 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47501 * 300.00501 * 1 2 3 21 21 H 1.09003 * 109.46875 * 60.00517 * 1 2 3 22 22 H 1.08996 * 109.47501 * 239.99499 * 2 1 3 23 23 H 1.09003 * 109.46875 * 119.99483 * 2 1 3 24 24 H 0.97000 * 119.99844 * 179.97438 * 5 4 3 25 25 H 0.97002 * 120.00073 * 359.97394 * 5 4 3 26 26 H 1.07999 * 120.14398 * 179.74749 * 6 4 3 27 27 H 0.97001 * 119.99776 * 179.97438 * 11 10 8 28 28 H 1.07995 * 120.06064 * 180.02562 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2630 2.0736 1.2090 5 7 2.0278 1.4101 2.4154 6 6 2.7243 3.3772 1.2165 7 6 2.9588 4.0403 -0.0009 8 6 3.4301 5.3735 -0.0055 9 1 3.2449 6.0088 -0.8590 10 6 4.1364 5.8697 1.0958 11 7 4.6638 5.0424 1.9614 12 14 4.3263 7.7132 1.3302 13 1 3.1929 8.2287 2.1394 14 1 5.6040 7.9938 2.0329 15 1 4.3329 8.3826 0.0047 16 6 2.7216 3.3692 -1.2149 17 6 2.2618 2.0701 -1.2027 18 17 1.9701 1.2427 -2.7008 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 2.1885 1.8637 3.2577 25 1 1.7038 0.4958 2.4110 26 1 2.8995 3.8851 2.1534 27 1 5.1537 5.3864 2.7247 28 1 2.8996 3.8712 -2.1544 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575715899.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:46:43 Heat of formation + Delta-G solvation = -24.301968 kcal Electronic energy + Delta-G solvation = -13218.875691 eV Core-core repulsion = 10872.607126 eV Total energy + Delta-G solvation = -2346.268565 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.98846 -37.20738 -36.37411 -34.42605 -33.91864 -30.48285 -29.06537 -27.12612 -23.99452 -22.70286 -21.39054 -19.37890 -17.80937 -17.17973 -16.44902 -16.11130 -15.14801 -14.86626 -14.71260 -14.29053 -14.25232 -13.62861 -13.02266 -12.88311 -12.81961 -12.57347 -12.47945 -11.97155 -11.91117 -11.83024 -11.47844 -11.22180 -11.14464 -10.57656 -9.10459 -8.66579 -8.02648 -6.35369 0.93795 1.15074 1.40252 1.50914 1.54571 1.56539 2.23072 2.72791 3.40058 3.71840 4.28812 4.31351 4.70702 4.79814 4.91030 5.07319 5.08199 5.17031 5.29265 5.34998 5.45972 5.51233 5.88556 5.92050 6.04420 6.18674 6.53571 6.86250 6.96947 7.08500 7.33712 8.34411 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.035600 B = 0.008810 C = 0.007380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.322695 B = 3177.398865 C = 3792.936060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.055 4.055 3 C -0.263 4.263 4 C 0.236 3.764 5 N -0.871 5.871 6 C -0.257 4.257 7 C 0.118 3.882 8 C -0.496 4.496 9 H 0.074 0.926 10 C 0.040 3.960 11 N -0.817 5.817 12 Si 0.981 3.019 13 H -0.262 1.262 14 H -0.268 1.268 15 H -0.261 1.261 16 C -0.275 4.275 17 C 0.036 3.964 18 Cl -0.096 7.096 19 H 0.071 0.929 20 H 0.047 0.953 21 H 0.040 0.960 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.397 0.603 25 H 0.399 0.601 26 H 0.108 0.892 27 H 0.288 0.712 28 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.270 -5.243 0.974 6.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.092 4.092 3 C -0.268 4.268 4 C 0.132 3.868 5 N -0.413 5.413 6 C -0.282 4.282 7 C 0.114 3.886 8 C -0.526 4.526 9 H 0.092 0.908 10 C -0.176 4.176 11 N -0.442 5.442 12 Si 0.802 3.198 13 H -0.186 1.186 14 H -0.192 1.192 15 H -0.185 1.185 16 C -0.297 4.297 17 C 0.009 3.991 18 Cl -0.067 7.067 19 H 0.090 0.910 20 H 0.066 0.934 21 H 0.059 0.941 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.225 0.775 25 H 0.229 0.771 26 H 0.126 0.874 27 H 0.098 0.902 28 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.141 -5.331 0.992 6.823 hybrid contribution 0.296 0.738 0.174 0.814 sum -3.845 -4.593 1.167 6.102 Atomic orbital electron populations 1.21683 0.94965 1.01537 1.01146 1.20092 0.95994 0.91513 1.01643 1.18788 1.19447 0.98987 0.89594 1.17324 0.92290 0.90973 0.86224 1.42257 1.77641 1.17125 1.04320 1.20736 1.14177 0.94843 0.98439 1.17526 0.87493 0.92925 0.90629 1.19787 1.32378 0.97268 1.03132 0.90815 1.26690 0.92235 1.04690 0.93940 1.69898 1.24373 1.38629 1.11307 0.85226 0.78622 0.76529 0.79467 1.18640 1.19217 1.18455 1.20807 1.16716 0.94629 0.97504 1.20303 1.01252 0.92378 0.85187 1.98237 1.94914 1.79192 1.34349 0.91016 0.93423 0.94064 0.91968 0.91556 0.77526 0.77069 0.87441 0.90168 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 9.89 71.98 0.71 -3.18 15 2 C -0.05 -1.80 5.21 29.85 0.16 -1.64 15 3 C -0.26 -11.06 5.18 -19.52 -0.10 -11.16 15 4 C 0.24 10.40 6.72 38.16 0.26 10.65 15 5 N -0.87 -29.51 8.98 -51.50 -0.46 -29.97 15 6 C -0.26 -13.23 8.53 22.86 0.19 -13.04 15 7 C 0.12 6.42 5.57 -21.31 -0.12 6.30 15 8 C -0.50 -26.95 9.05 23.46 0.21 -26.74 15 9 H 0.07 3.91 7.91 -2.91 -0.02 3.89 15 10 C 0.04 2.01 5.14 85.25 0.44 2.45 15 11 N -0.82 -41.97 10.95 21.82 0.24 -41.73 15 12 Si 0.98 37.97 29.60 68.60 2.03 40.00 15 13 H -0.26 -9.81 7.11 99.48 0.71 -9.10 15 14 H -0.27 -9.81 7.11 99.48 0.71 -9.10 15 15 H -0.26 -9.95 7.11 99.48 0.71 -9.24 15 16 C -0.28 -14.02 9.56 22.78 0.22 -13.80 15 17 C 0.04 1.61 6.30 22.25 0.14 1.75 15 18 Cl -0.10 -3.61 27.25 -2.72 -0.07 -3.68 15 19 H 0.07 1.62 8.14 -2.39 -0.02 1.60 15 20 H 0.05 1.37 8.14 -2.39 -0.02 1.35 15 21 H 0.04 1.27 8.14 -2.39 -0.02 1.25 15 22 H 0.06 2.02 6.87 -2.39 -0.02 2.01 15 23 H 0.07 1.93 6.52 -2.39 -0.02 1.91 15 24 H 0.40 12.47 8.84 -92.71 -0.82 11.65 15 25 H 0.40 11.16 6.80 -92.71 -0.63 10.53 15 26 H 0.11 5.73 6.16 -2.91 -0.02 5.71 15 27 H 0.29 13.31 8.30 -92.71 -0.77 12.54 15 28 H 0.09 4.75 8.06 -2.91 -0.02 4.73 15 Total: -1.00 -57.64 253.14 3.59 -54.05 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: -0.25 Total: 29.72 kcal Atomic # 6 Polarization: -50.50 SS G_CDS: 2.11 Total: -48.40 kcal Atomic # 7 Polarization: -71.47 SS G_CDS: -0.22 Total: -71.70 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 2.03 Total: 40.00 kcal Atomic # 17 Polarization: -3.61 SS G_CDS: -0.07 Total: -3.68 kcal Total: -57.64 3.59 -54.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715899.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.747 kcal (2) G-P(sol) polarization free energy of solvation -57.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds