Wall clock time and date at job start Mon Mar 30 2020 20:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 119.99920 * 2 1 4 4 C 1.50702 * 109.46618 * 89.99927 * 3 2 1 5 5 H 1.07994 * 120.00351 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99650 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99864 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00052 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47368 * 59.99538 * 8 6 4 10 10 H 1.48495 * 109.47290 * 180.02562 * 8 6 4 11 11 H 1.48508 * 109.46704 * 299.99765 * 8 6 4 12 12 C 1.34780 * 119.99949 * 180.27265 * 2 1 3 13 13 O 1.21562 * 119.99939 * 185.06762 * 12 2 1 14 14 C 1.47837 * 119.99893 * 5.07371 * 12 2 1 15 15 N 1.31537 * 125.58435 * 6.01330 * 14 12 2 16 16 N 1.40425 * 106.87828 * 179.85963 * 15 14 12 17 17 H 0.97003 * 126.74302 * 180.15597 * 16 15 14 18 18 C 1.35300 * 106.51433 * 0.40546 * 16 15 14 19 19 N 1.38291 * 125.94589 * 179.73730 * 18 16 15 20 20 N 1.31241 * 108.10688 * 359.75373 * 18 16 15 21 21 H 1.09005 * 109.46776 * 95.29981 * 1 2 3 22 22 H 1.08998 * 109.47016 * 215.29487 * 1 2 3 23 23 H 1.09001 * 109.47457 * 335.29871 * 1 2 3 24 24 H 1.09003 * 109.47018 * 209.99737 * 3 2 1 25 25 H 1.08995 * 109.47090 * 330.00361 * 3 2 1 26 26 H 0.97001 * 119.99524 * 179.97438 * 7 6 4 27 27 H 0.97003 * 120.00343 * 179.97438 * 19 18 16 28 28 H 0.97004 * 120.00256 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7037 1.4209 5 1 2.0980 1.0957 2.2417 6 6 3.1268 2.8774 1.6729 7 7 3.5550 3.6171 0.6732 8 14 3.4387 3.4163 3.4340 9 1 4.2410 2.3810 4.1338 10 1 4.1811 4.7024 3.4341 11 1 2.1413 3.5942 4.1343 12 6 2.1389 -1.1672 -0.0056 13 8 3.3509 -1.1697 0.0874 14 6 1.4040 -2.4444 -0.1249 15 7 0.1126 -2.5670 -0.3427 16 7 -0.1645 -3.9429 -0.3876 17 1 -1.0296 -4.3561 -0.5352 18 6 1.0112 -4.5791 -0.1789 19 7 1.1969 -5.9488 -0.1371 20 7 1.9448 -3.6699 -0.0226 21 1 -0.3633 -0.0949 -1.0233 22 1 -0.3633 -0.8388 0.5938 23 1 -0.3634 0.9336 0.4294 24 1 3.1499 1.1384 -0.5138 25 1 1.6084 2.0284 -0.5138 26 1 4.0318 4.4430 0.8506 27 1 2.0820 -6.3138 0.0188 28 1 0.4420 -6.5447 -0.2638 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055164513.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:44:30 Heat of formation + Delta-G solvation = 72.454152 kcal Electronic energy + Delta-G solvation = -15134.661137 eV Core-core repulsion = 12416.464570 eV Total energy + Delta-G solvation = -2718.196567 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 225.097 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.89625 -38.57248 -35.04245 -34.77062 -32.57484 -32.31591 -29.85069 -27.62672 -25.94988 -24.15702 -22.42239 -21.39757 -19.24604 -17.93466 -16.71979 -16.57081 -16.43725 -15.70987 -15.47291 -14.95085 -14.23203 -14.00434 -12.77300 -12.49717 -12.31060 -12.02669 -11.44854 -11.31363 -11.06719 -10.81775 -10.49638 -10.12889 -10.07691 -9.85575 -9.58893 -9.19755 -8.50008 -8.37104 -7.60896 -5.98344 -4.02722 1.55741 2.26259 2.67967 3.21437 3.38315 3.42017 3.46594 3.96873 4.07885 4.50635 4.66592 4.99120 5.36034 5.95302 6.09688 6.11952 6.20222 6.40465 6.53511 7.00254 7.11968 7.34029 7.45231 7.56043 7.97391 8.16890 8.27435 8.42671 8.92430 9.07580 9.61716 11.09815 Molecular weight = 225.10amu Principal moments of inertia in cm(-1) A = 0.050209 B = 0.006356 C = 0.006162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.535771 B = 4403.927120 C = 4542.975838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.582 5.582 3 C 0.247 3.753 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.588 3.412 13 O -0.506 6.506 14 C 0.238 3.762 15 N -0.284 5.284 16 N -0.518 5.518 17 H 0.435 0.565 18 C 0.527 3.473 19 N -0.827 5.827 20 N -0.540 5.540 21 H 0.048 0.952 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.046 0.954 25 H 0.039 0.961 26 H 0.264 0.736 27 H 0.425 0.575 28 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.301 -16.500 -2.620 19.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.314 5.314 3 C 0.129 3.871 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.203 1.203 12 C 0.369 3.631 13 O -0.378 6.378 14 C -0.048 4.048 15 N -0.120 5.120 16 N -0.243 5.243 17 H 0.280 0.720 18 C 0.158 3.842 19 N -0.384 5.384 20 N -0.279 5.279 21 H 0.067 0.933 22 H 0.089 0.911 23 H 0.092 0.908 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.258 0.742 28 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -9.573 -15.602 -2.626 18.492 hybrid contribution -0.544 -0.702 0.865 1.240 sum -10.117 -16.304 -1.760 19.269 Atomic orbital electron populations 1.21835 0.80242 1.02717 1.01054 1.48022 1.07002 1.06735 1.69650 1.19412 0.92566 0.77330 0.97822 1.21402 1.36618 1.06312 0.92201 0.92307 1.24926 0.95288 0.96335 0.97504 1.69926 1.38354 1.14396 1.30784 0.86531 0.78347 0.77758 0.84636 1.20099 1.21209 1.20274 1.16518 0.86254 0.80674 0.79673 1.90807 1.12662 1.85544 1.48771 1.24143 0.88336 0.94328 0.97978 1.78574 1.15692 0.90036 1.27667 1.47958 1.09577 1.05069 1.61700 0.72048 1.20415 0.83321 0.87388 0.93027 1.40959 1.14735 0.99115 1.83599 1.70780 1.28948 0.97464 1.30717 0.93323 0.91121 0.90762 0.93595 0.94313 0.92656 0.74229 0.75929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.56 9.28 59.85 0.56 2.12 15 2 N -0.58 -13.53 2.86 -184.07 -0.53 -14.05 15 3 C 0.25 6.70 5.10 -5.19 -0.03 6.67 15 4 C -0.53 -15.39 9.39 -34.44 -0.32 -15.71 15 5 H 0.06 1.72 7.81 -52.49 -0.41 1.31 15 6 C 0.06 1.79 5.46 -17.82 -0.10 1.69 15 7 N -0.90 -26.98 13.29 55.43 0.74 -26.25 15 8 Si 0.90 22.34 29.54 -169.99 -5.02 17.32 15 9 H -0.28 -6.89 7.11 56.52 0.40 -6.49 15 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 12 C 0.59 14.13 7.67 -12.33 -0.09 14.04 15 13 O -0.51 -14.14 16.72 5.31 0.09 -14.05 15 14 C 0.24 4.75 7.60 -156.53 -1.19 3.56 15 15 N -0.28 -4.63 9.46 32.03 0.30 -4.33 15 16 N -0.52 -6.00 7.47 30.03 0.22 -5.77 15 17 H 0.43 3.00 8.96 -182.35 -1.63 1.36 15 18 C 0.53 6.71 9.48 -320.85 -3.04 3.67 15 19 N -0.83 -5.77 9.06 30.03 0.27 -5.50 15 20 N -0.54 -9.94 11.23 -11.85 -0.13 -10.07 15 21 H 0.05 0.80 8.13 -51.93 -0.42 0.37 15 22 H 0.07 1.22 5.92 -51.93 -0.31 0.91 15 23 H 0.07 1.33 8.03 -51.93 -0.42 0.91 15 24 H 0.05 1.38 7.49 -51.93 -0.39 0.99 15 25 H 0.04 1.04 8.07 -51.93 -0.42 0.62 15 26 H 0.26 7.50 8.31 -40.82 -0.34 7.16 15 27 H 0.42 2.67 8.95 -40.82 -0.37 2.31 15 28 H 0.41 1.24 8.95 -40.82 -0.37 0.88 15 LS Contribution 255.55 15.07 3.85 3.85 Total: -1.00 -37.00 255.55 -8.28 -45.29 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -3.86 Total: -2.49 kcal Atomic # 6 Polarization: 20.26 SS G_CDS: -4.22 Total: 16.05 kcal Atomic # 7 Polarization: -66.84 SS G_CDS: 0.88 Total: -65.97 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.09 Total: -14.05 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -37.00 -8.28 -45.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055164513.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.742 kcal (2) G-P(sol) polarization free energy of solvation -37.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds