Wall clock time and date at job start Mon Mar 30 2020 20:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 N 1.46904 * 109.47027 * 240.00552 * 2 1 3 13 13 C 1.46896 * 111.00107 * 84.99918 * 12 2 1 14 14 H 1.09002 * 109.47336 * 325.00233 * 13 12 2 15 15 C 1.53000 * 109.46912 * 85.00230 * 13 12 2 16 16 C 1.50701 * 109.47338 * 205.00160 * 13 12 2 17 17 C 1.38417 * 122.54279 * 140.00202 * 16 13 12 18 18 C 1.33393 * 114.92249 * 179.97438 * 17 16 13 19 19 S 1.75882 * 109.59122 * 359.97438 * 18 17 16 20 20 C 1.33391 * 122.53713 * 319.71086 * 16 13 12 21 21 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 23 23 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 24 24 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 25 25 H 1.00893 * 110.99635 * 321.04453 * 12 2 1 26 26 H 1.09005 * 109.46867 * 179.97438 * 15 13 12 27 27 H 1.09001 * 109.47333 * 299.99359 * 15 13 12 28 28 H 1.08995 * 109.47753 * 59.99865 * 15 13 12 29 29 H 1.08001 * 122.53759 * 359.97438 * 17 16 13 30 30 H 1.07994 * 125.20234 * 179.97438 * 18 17 16 31 31 H 1.08011 * 125.20137 * 0.02562 * 20 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.7959 -1.1287 4.0136 10 1 1.8119 -0.4309 5.2203 11 1 1.8152 -2.5279 4.0019 12 7 2.0196 -0.6924 -1.1995 13 6 2.0824 0.2227 -2.3469 14 1 1.2576 0.9331 -2.2906 15 6 3.4111 0.9810 -2.3223 16 6 1.9785 -0.5673 -3.6260 17 6 1.2431 -0.1296 -4.7139 18 6 1.2560 -0.9481 -5.7671 19 16 2.2407 -2.3598 -5.4049 20 6 2.5929 -1.7388 -3.7976 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.7006 1.1552 3.4844 25 1 1.4495 -1.4977 -1.4101 26 1 3.4579 1.6597 -3.1740 27 1 3.4862 1.5526 -1.3972 28 1 4.2359 0.2707 -2.3786 29 1 0.6999 0.8038 -4.7102 30 1 0.7408 -0.7710 -6.6995 31 1 3.2109 -2.2315 -3.0614 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061363076.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:44:46 Heat of formation + Delta-G solvation = 27.990529 kcal Electronic energy + Delta-G solvation = -13366.761002 eV Core-core repulsion = 11160.636810 eV Total energy + Delta-G solvation = -2206.124191 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.58007 -35.66158 -32.84428 -30.50691 -28.57784 -26.91529 -25.14246 -24.27540 -21.37115 -19.70171 -18.36890 -17.52208 -16.25102 -15.27884 -14.73721 -14.04267 -13.63435 -13.41110 -12.66070 -12.45911 -12.39823 -12.12007 -11.76308 -11.41518 -11.30486 -11.12492 -10.88606 -10.77441 -10.41613 -10.34800 -10.05268 -9.76886 -8.98049 -8.59062 -8.33100 -8.17930 -7.23099 -5.95992 -3.99063 1.21787 1.85117 2.16680 2.94026 3.36015 3.39827 3.43263 4.45885 4.99048 5.33850 5.35384 5.36436 5.60467 5.75085 5.97544 6.03662 6.16082 6.32173 6.50083 6.62822 6.70199 6.75269 6.86000 6.87608 7.14382 7.41903 7.77124 7.91744 8.31093 8.57233 8.64964 9.07827 9.66109 11.11070 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.047742 B = 0.006205 C = 0.005988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.349302 B = 4511.357059 C = 4674.819545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 H 0.035 0.965 4 C -0.494 4.494 5 H 0.061 0.939 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.677 5.677 13 C 0.141 3.859 14 H 0.043 0.957 15 C -0.129 4.129 16 C -0.102 4.102 17 C -0.124 4.124 18 C -0.220 4.220 19 S 0.062 5.938 20 C -0.183 4.183 21 H 0.027 0.973 22 H 0.089 0.911 23 H 0.004 0.996 24 H 0.260 0.740 25 H 0.327 0.673 26 H 0.043 0.957 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.137 0.863 30 H 0.159 0.841 31 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.044 -2.387 -13.989 14.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.104 3.896 3 H 0.053 0.947 4 C -0.533 4.533 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.307 5.307 13 C 0.028 3.972 14 H 0.061 0.939 15 C -0.187 4.187 16 C -0.114 4.114 17 C -0.155 4.155 18 C -0.355 4.355 19 S 0.325 5.675 20 C -0.318 4.318 21 H 0.046 0.954 22 H 0.107 0.893 23 H 0.023 0.977 24 H 0.069 0.931 25 H 0.144 0.856 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.154 0.846 30 H 0.177 0.823 31 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.041 -3.497 -14.487 15.043 hybrid contribution -1.194 0.946 1.401 2.069 sum 0.847 -2.551 -13.086 13.360 Atomic orbital electron populations 1.22438 1.00828 0.99161 1.00418 1.19205 0.89468 0.94524 0.86440 0.94676 1.21112 1.30091 1.12456 0.89608 0.92041 1.24942 0.95358 0.95225 0.98997 1.69871 1.37281 1.23271 1.23390 0.86579 0.79142 0.79628 0.82122 1.20320 1.21487 1.20417 1.60962 1.58085 1.08741 1.02951 1.20143 0.97350 0.93223 0.86499 0.93873 1.21736 0.96777 0.99329 1.00842 1.19255 0.98717 0.95994 0.97402 1.20161 1.01392 1.01217 0.92717 1.25452 1.07662 0.98927 1.03496 1.84110 1.48168 1.23734 1.11485 1.25516 1.07169 1.00185 0.98976 0.95425 0.89267 0.97686 0.93052 0.85599 0.93797 0.91939 0.92452 0.84565 0.82339 0.81135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.92 37.16 0.33 -3.77 16 2 C 0.21 5.28 2.39 -68.86 -0.16 5.11 16 3 H 0.04 0.96 7.11 -51.93 -0.37 0.59 16 4 C -0.49 -13.64 8.84 -34.44 -0.30 -13.95 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -25.74 11.31 55.43 0.63 -25.12 16 8 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.68 -14.24 5.70 -102.17 -0.58 -14.82 16 13 C 0.14 2.54 2.72 -68.87 -0.19 2.35 16 14 H 0.04 0.82 7.06 -51.93 -0.37 0.46 16 15 C -0.13 -2.20 9.38 37.16 0.35 -1.86 16 16 C -0.10 -1.59 4.61 -106.25 -0.49 -2.08 16 17 C -0.12 -1.70 9.95 -41.21 -0.41 -2.11 16 18 C -0.22 -2.68 11.23 29.04 0.33 -2.35 16 19 S 0.06 0.77 23.34 -107.50 -2.51 -1.74 16 20 C -0.18 -2.70 10.24 29.04 0.30 -2.41 16 21 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 22 H 0.09 2.39 6.06 -51.93 -0.31 2.08 16 23 H 0.00 0.09 7.43 -51.93 -0.39 -0.29 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.33 6.73 7.79 -39.30 -0.31 6.42 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 1.17 7.43 -51.93 -0.39 0.79 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.17 2.55 8.03 -52.48 -0.42 2.13 16 LS Contribution 272.33 15.07 4.10 4.10 Total: -1.00 -28.06 272.33 -7.94 -36.00 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -4.21 Total: 4.66 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: -0.35 Total: -19.63 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.04 Total: -39.94 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.51 Total: -1.74 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.06 -7.94 -36.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061363076.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.988 kcal (2) G-P(sol) polarization free energy of solvation -28.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds