Wall clock time and date at job start Mon Mar 30 2020 20:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46896 * 110.99805 * 2 1 4 4 C 1.50706 * 109.47293 * 293.95211 * 3 2 1 5 5 H 1.08003 * 119.99552 * 0.02562 * 4 3 2 6 6 C 1.37871 * 119.99706 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99597 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 120.00465 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.47040 * 90.00134 * 8 6 4 10 10 H 1.48498 * 109.47401 * 210.00290 * 8 6 4 11 11 H 1.48502 * 109.47229 * 330.00277 * 8 6 4 12 12 C 1.46899 * 110.99769 * 123.95279 * 2 1 3 13 13 C 1.52997 * 109.47254 * 66.04707 * 12 2 1 14 14 C 1.50697 * 109.47466 * 179.97438 * 13 12 2 15 15 C 1.38421 * 122.54069 * 269.73676 * 14 13 12 16 16 C 1.33391 * 114.91982 * 179.75813 * 15 14 13 17 17 S 1.75881 * 109.59442 * 0.47793 * 16 15 14 18 18 C 1.33387 * 122.53849 * 90.02093 * 14 13 12 19 19 H 1.08995 * 109.47407 * 296.04618 * 1 2 3 20 20 H 1.09006 * 109.46770 * 56.04664 * 1 2 3 21 21 H 1.09003 * 109.46848 * 176.04346 * 1 2 3 22 22 H 1.09006 * 109.47466 * 53.95276 * 3 2 1 23 23 H 1.09000 * 109.46995 * 173.95474 * 3 2 1 24 24 H 0.97004 * 119.99714 * 180.02562 * 7 6 4 25 25 H 1.09002 * 109.47043 * 186.04778 * 12 2 1 26 26 H 1.09001 * 109.47354 * 306.04839 * 12 2 1 27 27 H 1.09002 * 109.47153 * 300.00004 * 13 12 2 28 28 H 1.08998 * 109.47533 * 59.99633 * 13 12 2 29 29 H 1.07997 * 122.53936 * 0.02562 * 15 14 13 30 30 H 1.08001 * 125.20381 * 180.21019 * 16 15 14 31 31 H 1.08005 * 125.20560 * 0.02961 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0740 1.5114 -2.0485 6 6 2.0277 3.3491 -1.5288 7 7 1.7144 3.9389 -2.6618 8 14 3.0008 4.2758 -0.2313 9 1 4.4532 4.0624 -0.4555 10 1 2.6935 5.7257 -0.3236 11 1 2.6294 3.7760 1.1169 12 6 1.9955 -0.7660 1.1376 13 6 1.6315 -2.2426 0.9704 14 6 2.1720 -3.0285 2.1371 15 6 3.4324 -3.6007 2.1294 16 6 3.7579 -4.2581 3.2435 17 16 2.4210 -4.1844 4.3839 18 6 1.4700 -3.2301 3.2532 19 1 -0.3634 0.4512 0.9232 20 1 -0.3633 0.5740 -0.8525 21 1 -0.3633 -1.0253 -0.0709 22 1 1.5611 1.9274 0.8309 23 1 3.0797 1.3444 0.1082 24 1 1.9896 4.8549 -2.8241 25 1 3.0797 -0.6611 1.1757 26 1 1.5611 -0.3872 2.0628 27 1 0.5472 -2.3475 0.9323 28 1 2.0658 -2.6214 0.0452 29 1 4.1030 -3.5175 1.2870 30 1 4.6971 -4.7624 3.4169 31 1 0.4703 -2.8637 3.4348 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069790621.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:45:15 Heat of formation + Delta-G solvation = 14.447449 kcal Electronic energy + Delta-G solvation = -12969.803687 eV Core-core repulsion = 10763.092224 eV Total energy + Delta-G solvation = -2206.711463 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.61117 -38.05149 -34.75492 -32.59506 -30.11467 -29.07089 -27.06242 -24.71900 -23.04911 -21.65744 -19.58427 -18.97836 -18.43526 -16.82096 -16.35702 -16.17855 -15.63533 -15.00920 -14.54310 -14.41196 -13.90841 -13.85528 -13.44051 -13.24626 -13.02595 -12.77304 -12.62530 -12.35098 -12.18022 -11.87236 -11.69802 -11.52680 -11.42195 -10.78390 -9.67583 -9.24314 -9.02901 -8.28543 -6.31918 0.12692 0.81048 1.10163 1.34506 1.35553 1.46325 1.79812 2.34079 3.04458 3.27880 4.00642 4.17816 4.21828 4.37866 4.50916 4.60353 4.63005 4.69872 4.73037 4.87775 4.99286 5.02340 5.10029 5.21143 5.27141 5.52321 5.53533 5.66682 5.98566 6.36266 6.64908 6.74354 7.31829 8.88027 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.048854 B = 0.005229 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.004505 B = 5353.328113 C = 5593.190195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.549 5.549 3 C 0.170 3.830 4 C -0.517 4.517 5 H 0.040 0.960 6 C 0.009 3.991 7 N -0.947 5.947 8 Si 0.946 3.054 9 H -0.264 1.264 10 H -0.280 1.280 11 H -0.254 1.254 12 C 0.064 3.936 13 C -0.047 4.047 14 C -0.106 4.106 15 C -0.145 4.145 16 C -0.211 4.211 17 S 0.096 5.904 18 C -0.222 4.222 19 H 0.018 0.982 20 H 0.048 0.952 21 H 0.083 0.917 22 H -0.014 1.014 23 H 0.027 0.973 24 H 0.267 0.733 25 H 0.065 0.935 26 H 0.026 0.974 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.147 0.853 30 H 0.186 0.814 31 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.296 -16.173 15.109 22.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.273 5.273 3 C 0.043 3.957 4 C -0.556 4.556 5 H 0.058 0.942 6 C -0.188 4.188 7 N -0.588 5.588 8 Si 0.770 3.230 9 H -0.189 1.189 10 H -0.206 1.206 11 H -0.178 1.178 12 C -0.064 4.064 13 C -0.087 4.087 14 C -0.119 4.119 15 C -0.175 4.175 16 C -0.346 4.346 17 S 0.359 5.641 18 C -0.357 4.357 19 H 0.036 0.964 20 H 0.066 0.934 21 H 0.101 0.899 22 H 0.003 0.997 23 H 0.045 0.955 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.044 0.956 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.165 0.835 30 H 0.203 0.797 31 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.228 -16.826 16.068 23.372 hybrid contribution 0.244 1.776 -0.716 1.931 sum 2.472 -15.050 15.352 21.640 Atomic orbital electron populations 1.22253 0.87455 1.01588 0.99698 1.61841 1.08427 1.14634 1.42380 1.19952 0.95059 0.85978 0.94703 1.21275 1.34934 0.97575 1.01770 0.94193 1.25828 0.96991 0.98388 0.97637 1.70049 1.48560 1.13950 1.26250 0.85732 0.79533 0.77729 0.80055 1.18877 1.20574 1.17813 1.22077 0.99754 0.93610 0.90961 1.20210 1.01167 0.91949 0.95397 1.19028 0.95119 1.01066 0.96637 1.20328 0.96878 1.00257 1.00054 1.25899 1.03924 1.07485 0.97260 1.84088 1.08022 1.52065 1.19889 1.25690 1.05208 1.07162 0.97652 0.96361 0.93353 0.89867 0.99655 0.95508 0.92387 0.91669 0.95578 0.90408 0.90446 0.83499 0.79660 0.81094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.45 9.14 127.69 1.17 2.62 16 2 N -0.55 -22.93 4.75 -927.02 -4.41 -27.34 16 3 C 0.17 8.35 3.79 85.56 0.32 8.67 16 4 C -0.52 -30.37 9.01 25.60 0.23 -30.14 16 5 H 0.04 2.60 7.37 -2.91 -0.02 2.58 16 6 C 0.01 0.52 5.47 84.65 0.46 0.99 16 7 N -0.95 -59.64 13.96 21.45 0.30 -59.35 16 8 Si 0.95 44.49 27.47 68.60 1.88 46.38 16 9 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.25 -11.28 6.54 99.48 0.65 -10.63 16 12 C 0.06 2.13 4.94 86.30 0.43 2.55 16 13 C -0.05 -1.26 5.39 29.85 0.16 -1.10 16 14 C -0.11 -2.51 5.06 -20.92 -0.11 -2.62 16 15 C -0.14 -3.14 9.98 21.22 0.21 -2.93 16 16 C -0.21 -3.85 11.23 66.72 0.75 -3.10 16 17 S 0.10 1.75 23.34 -56.49 -1.32 0.43 16 18 C -0.22 -4.75 10.98 66.72 0.73 -4.02 16 19 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 20 H 0.05 2.12 6.76 -2.38 -0.02 2.11 16 21 H 0.08 2.57 6.47 -2.39 -0.02 2.56 16 22 H -0.01 -0.70 7.18 -2.38 -0.02 -0.71 16 23 H 0.03 1.29 7.36 -2.39 -0.02 1.28 16 24 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 25 H 0.06 2.18 7.93 -2.39 -0.02 2.16 16 26 H 0.03 0.85 8.12 -2.39 -0.02 0.83 16 27 H 0.08 1.95 6.53 -2.39 -0.02 1.93 16 28 H 0.08 2.12 8.13 -2.39 -0.02 2.11 16 29 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 30 H 0.19 2.36 8.06 -2.91 -0.02 2.34 16 31 H 0.17 3.20 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -65.97 271.73 1.86 -64.11 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 1.04 Total: 4.83 kcal Atomic # 6 Polarization: -33.42 SS G_CDS: 4.36 Total: -29.06 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -4.11 Total: -86.69 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.88 Total: 46.38 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -1.32 Total: 0.43 kcal Total: -65.97 1.86 -64.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069790621.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.558 kcal (2) G-P(sol) polarization free energy of solvation -65.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds