Wall clock time and date at job start Mon Mar 30 2020 20:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35959 * 116.99953 * 2 1 4 4 C 1.38657 * 120.06502 * 359.96941 * 3 2 1 5 5 C 1.38186 * 119.97080 * 179.75074 * 4 3 2 6 6 C 1.38265 * 120.09043 * 0.53107 * 5 4 3 7 7 C 1.50697 * 119.93262 * 179.76995 * 6 5 4 8 8 H 1.09001 * 109.46613 * 199.72467 * 7 6 5 9 9 N 1.46906 * 109.46982 * 319.72253 * 7 6 5 10 10 C 1.50698 * 109.47576 * 79.72500 * 7 6 5 11 11 H 1.08004 * 119.99528 * 359.97438 * 10 7 6 12 12 C 1.37876 * 120.00356 * 180.02562 * 10 7 6 13 13 N 1.31518 * 119.99554 * 359.97438 * 12 10 7 14 14 Si 1.86790 * 120.00086 * 179.97438 * 12 10 7 15 15 H 1.48506 * 109.47385 * 59.99525 * 14 12 10 16 16 H 1.48500 * 109.47279 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47348 * 299.99599 * 14 12 10 18 18 C 1.38258 * 120.12799 * 359.49068 * 6 5 4 19 19 C 1.38334 * 120.02803 * 0.23294 * 18 6 5 20 20 F 1.35100 * 120.04525 * 179.97438 * 19 18 6 21 21 H 1.09002 * 109.47396 * 300.00938 * 1 2 3 22 22 H 1.09003 * 109.46695 * 60.00699 * 1 2 3 23 23 H 1.08993 * 109.47266 * 180.02562 * 1 2 3 24 24 H 1.08001 * 120.01493 * 0.05072 * 4 3 2 25 25 H 1.07991 * 119.95202 * 180.30088 * 5 4 3 26 26 H 1.00896 * 111.00309 * 60.00059 * 9 7 6 27 27 H 1.00902 * 110.99923 * 183.96223 * 9 7 6 28 28 H 0.97005 * 119.99198 * 180.02562 * 13 12 10 29 29 H 1.07999 * 119.98337 * 180.25646 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2924 2.3751 -0.0006 5 6 1.9217 3.6053 0.0046 6 6 3.3025 3.6777 -0.0007 7 6 3.9851 5.0212 -0.0002 8 1 5.0107 4.9076 -0.3513 9 7 3.2613 5.9384 -0.8907 10 6 3.9922 5.5806 1.3991 11 1 3.5465 5.0196 2.2072 12 6 4.5667 6.8092 1.6475 13 7 5.1089 7.4925 0.6632 14 14 4.5748 7.5029 3.3817 15 1 5.3065 6.5760 4.2823 16 1 5.2476 8.8267 3.3822 17 1 3.1773 7.6572 3.8598 18 6 4.0580 2.5198 -0.0005 19 6 3.4333 1.2856 0.0000 20 9 4.1713 0.1539 -0.0003 21 1 -0.3634 0.5140 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 0.0005 24 1 0.2138 2.3201 -0.0003 25 1 1.3343 4.5115 0.0090 26 1 2.3071 6.0603 -0.5862 27 1 3.7357 6.8265 -0.9580 28 1 5.5134 8.3567 0.8381 29 1 5.1364 2.5790 -0.0004 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084355227.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:46:45 Heat of formation + Delta-G solvation = -64.422370 kcal Electronic energy + Delta-G solvation = -15122.602018 eV Core-core repulsion = 12346.257326 eV Total energy + Delta-G solvation = -2776.344691 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 225.091 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.29768 -39.59501 -37.45154 -34.35188 -31.46275 -30.24833 -29.07599 -27.06175 -25.84779 -22.95393 -22.16103 -20.11087 -17.95903 -16.67091 -16.50357 -15.92276 -15.79133 -15.02593 -14.69544 -14.47345 -14.19857 -13.83397 -12.97553 -12.71958 -12.56135 -12.00401 -11.79466 -11.49535 -11.33781 -10.97319 -10.83671 -10.66139 -10.56992 -9.99021 -9.71650 -8.70994 -8.38383 -7.60094 -7.23157 -6.14647 -4.32153 1.69148 1.87073 3.20865 3.26380 3.29435 3.42201 4.15725 4.33056 4.69534 5.05028 5.07184 5.20053 5.25589 5.46884 5.49680 5.78299 5.92249 6.02642 6.42814 6.48777 6.61307 6.87947 7.03631 7.15160 7.62321 7.68551 7.70380 8.01814 8.59723 8.85578 9.04243 9.39948 10.82732 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.037992 B = 0.006997 C = 0.006893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.810944 B = 4000.984079 C = 4061.142762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.318 6.318 3 C 0.063 3.937 4 C -0.182 4.182 5 C -0.080 4.080 6 C -0.029 4.029 7 C 0.242 3.758 8 H 0.050 0.950 9 N -0.850 5.850 10 C -0.547 4.547 11 H 0.057 0.943 12 C 0.067 3.933 13 N -0.893 5.893 14 Si 0.899 3.101 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.276 1.276 18 C -0.122 4.122 19 C 0.064 3.936 20 F -0.143 7.143 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.095 0.905 24 H 0.128 0.872 25 H 0.128 0.872 26 H 0.311 0.689 27 H 0.357 0.643 28 H 0.267 0.733 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.703 -8.522 -1.110 11.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.232 6.232 3 C 0.018 3.982 4 C -0.201 4.201 5 C -0.099 4.099 6 C -0.030 4.030 7 C 0.132 3.868 8 H 0.068 0.932 9 N -0.380 5.380 10 C -0.587 4.587 11 H 0.075 0.925 12 C -0.136 4.136 13 N -0.531 5.531 14 Si 0.726 3.274 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.141 4.141 19 C 0.045 3.955 20 F -0.122 7.122 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.113 0.887 24 H 0.146 0.854 25 H 0.146 0.854 26 H 0.121 0.879 27 H 0.174 0.826 28 H 0.077 0.923 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.324 -9.113 -1.739 11.820 hybrid contribution -0.167 0.976 1.922 2.162 sum -7.491 -8.137 0.182 11.062 Atomic orbital electron populations 1.22981 0.78906 1.03366 1.01257 1.86063 1.20937 1.26499 1.89747 1.18810 0.90657 0.85136 1.03640 1.21041 0.99460 0.91762 1.07862 1.20830 0.94701 0.96427 0.97951 1.20303 0.93140 0.96272 0.93239 1.17979 0.93073 0.84532 0.91228 0.93228 1.59536 1.05339 1.19489 1.53611 1.21777 1.38707 1.03553 0.94620 0.92517 1.25019 0.94222 0.96830 0.97489 1.69734 1.37990 1.14019 1.31392 0.86545 0.78345 0.78123 0.84360 1.20088 1.21159 1.20191 1.20928 1.01050 0.89626 1.02482 1.16955 0.85782 0.82695 1.10091 1.91430 1.76683 1.49465 1.94599 0.92834 0.92811 0.88669 0.85448 0.85392 0.87934 0.82642 0.92302 0.84500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 15 2 O -0.32 -5.12 10.36 -19.61 -0.20 -5.32 15 3 C 0.06 1.11 6.69 -39.18 -0.26 0.85 15 4 C -0.18 -3.01 9.04 -39.45 -0.36 -3.37 15 5 C -0.08 -1.51 9.28 -39.59 -0.37 -1.87 15 6 C -0.03 -0.60 4.90 -104.61 -0.51 -1.12 15 7 C 0.24 5.83 2.95 -70.02 -0.21 5.63 15 8 H 0.05 1.31 8.00 -51.93 -0.42 0.90 15 9 N -0.85 -19.49 9.02 -6.65 -0.06 -19.55 15 10 C -0.55 -14.26 8.70 -34.44 -0.30 -14.56 15 11 H 0.06 1.50 7.74 -52.48 -0.41 1.09 15 12 C 0.07 1.76 5.38 -17.82 -0.10 1.67 15 13 N -0.89 -23.97 11.54 55.43 0.64 -23.33 15 14 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 15 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 16 H -0.29 -6.49 7.11 56.52 0.40 -6.08 15 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 18 C -0.12 -2.44 9.64 -39.54 -0.38 -2.82 15 19 C 0.06 1.24 7.31 -39.30 -0.29 0.96 15 20 F -0.14 -2.75 17.11 2.25 0.04 -2.71 15 21 H 0.05 0.53 7.66 -51.93 -0.40 0.13 15 22 H 0.05 0.52 7.66 -51.93 -0.40 0.12 15 23 H 0.09 0.78 8.14 -51.93 -0.42 0.36 15 24 H 0.13 1.67 6.30 -52.49 -0.33 1.34 15 25 H 0.13 2.27 6.67 -52.49 -0.35 1.92 15 26 H 0.31 6.66 7.34 -39.29 -0.29 6.38 15 27 H 0.36 8.80 7.08 -39.29 -0.28 8.52 15 28 H 0.27 6.89 8.31 -40.82 -0.34 6.55 15 29 H 0.14 2.62 8.03 -52.49 -0.42 2.20 15 LS Contribution 255.52 15.07 3.85 3.85 Total: -1.00 -27.87 255.52 -5.38 -33.24 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -2.84 Total: 11.64 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -1.78 Total: -13.32 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: 0.58 Total: -42.88 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.20 Total: -5.32 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.04 Total: -2.71 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.87 -5.38 -33.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084355227.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.181 kcal (2) G-P(sol) polarization free energy of solvation -27.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds