Wall clock time and date at job start Mon Mar 30 2020 20:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35958 * 116.99964 * 2 1 4 4 C 1.38662 * 120.05974 * 359.97438 * 3 2 1 5 5 C 1.38183 * 119.96893 * 180.02562 * 4 3 2 6 6 C 1.38266 * 120.09321 * 359.97438 * 5 4 3 7 7 C 1.38255 * 120.12550 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.98146 * 180.02562 * 7 6 5 9 9 H 1.09009 * 109.47173 * 220.00081 * 8 7 6 10 10 N 1.46904 * 109.47265 * 339.99928 * 8 7 6 11 11 C 1.50698 * 109.47332 * 100.00261 * 8 7 6 12 12 H 1.08003 * 119.99974 * 359.97438 * 11 8 7 13 13 C 1.37879 * 120.00438 * 180.02562 * 11 8 7 14 14 N 1.31515 * 119.99639 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 120.00150 * 179.97438 * 13 11 8 16 16 H 1.48496 * 109.47387 * 59.99679 * 15 13 11 17 17 H 1.48500 * 109.46997 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46991 * 299.99474 * 15 13 11 19 19 C 1.38326 * 120.03279 * 0.02562 * 7 6 5 20 20 F 1.35095 * 120.05101 * 179.97438 * 19 7 6 21 21 H 1.09006 * 109.46814 * 299.99194 * 1 2 3 22 22 H 1.08993 * 109.47743 * 59.99800 * 1 2 3 23 23 H 1.09003 * 109.46969 * 180.02562 * 1 2 3 24 24 H 1.08003 * 120.01476 * 0.04223 * 4 3 2 25 25 H 1.07996 * 119.95168 * 180.02562 * 5 4 3 26 26 H 1.07999 * 119.93436 * 180.27560 * 6 5 4 27 27 H 1.00896 * 110.99844 * 296.04587 * 10 8 7 28 28 H 1.00893 * 110.99963 * 60.00216 * 10 8 7 29 29 H 0.97002 * 119.99587 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2922 2.3751 -0.0005 5 6 1.9215 3.6053 -0.0011 6 6 3.3022 3.6778 -0.0005 7 6 4.0578 2.5199 0.0011 8 6 5.5625 2.6027 0.0022 9 1 5.9691 1.8360 -0.6574 10 7 5.9804 3.9287 -0.4723 11 6 6.0765 2.3850 1.4020 12 1 5.3829 2.2052 2.2101 13 6 7.4322 2.4165 1.6514 14 7 8.2768 2.6359 0.6674 15 14 8.0693 2.1474 3.3866 16 1 7.6472 0.8070 3.8666 17 1 9.5520 2.2288 3.3877 18 1 7.5151 3.1920 4.2849 19 6 3.4333 1.2857 0.0016 20 9 4.1713 0.1541 0.0027 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 0.2136 2.3200 -0.0003 25 1 1.3340 4.5115 -0.0011 26 1 3.7914 4.6406 0.0035 27 1 5.7034 4.0732 -1.4316 28 1 5.6160 4.6571 0.1231 29 1 9.2306 2.6577 0.8428 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095683178.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:48:31 Heat of formation + Delta-G solvation = -51.284829 kcal Electronic energy + Delta-G solvation = -15399.302931 eV Core-core repulsion = 12623.527926 eV Total energy + Delta-G solvation = -2775.775005 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 225.091 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.93831 -39.62750 -37.48773 -34.33126 -31.61681 -30.02535 -28.91265 -27.27191 -25.92978 -22.95586 -21.97636 -20.15296 -17.62958 -16.65735 -16.40917 -16.24278 -15.72400 -14.65863 -14.47718 -14.38845 -14.17083 -14.02312 -13.41208 -12.51675 -12.25698 -12.11059 -11.98911 -11.43906 -11.09746 -10.94554 -10.81543 -10.67356 -10.56712 -9.79560 -9.33137 -8.42493 -8.00408 -7.77237 -7.17710 -5.86121 -4.01217 1.68180 1.74220 3.38382 3.39528 3.42393 3.45973 4.07808 4.52440 4.79826 4.98001 5.15659 5.20848 5.37085 5.42522 5.45270 5.60447 5.73406 6.09874 6.19866 6.43025 6.54026 6.72130 6.87597 7.12987 7.42640 7.65811 7.91100 8.16666 8.58380 8.96237 9.11642 9.66840 11.18417 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.034839 B = 0.008516 C = 0.007704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.492941 B = 3287.081866 C = 3633.723209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.314 6.314 3 C 0.085 3.915 4 C -0.209 4.209 5 C -0.095 4.095 6 C -0.142 4.142 7 C -0.070 4.070 8 C 0.256 3.744 9 H 0.056 0.944 10 N -0.807 5.807 11 C -0.529 4.529 12 H 0.053 0.947 13 C 0.085 3.915 14 N -0.846 5.846 15 Si 0.888 3.112 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.074 3.926 20 F -0.126 7.126 21 H 0.053 0.947 22 H 0.052 0.948 23 H 0.096 0.904 24 H 0.126 0.874 25 H 0.122 0.878 26 H 0.128 0.872 27 H 0.300 0.700 28 H 0.319 0.681 29 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.136 0.113 -2.169 14.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.228 6.228 3 C 0.039 3.961 4 C -0.227 4.227 5 C -0.113 4.113 6 C -0.160 4.160 7 C -0.074 4.074 8 C 0.146 3.854 9 H 0.073 0.927 10 N -0.334 5.334 11 C -0.568 4.568 12 H 0.071 0.929 13 C -0.122 4.122 14 N -0.481 5.481 15 Si 0.715 3.285 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C 0.053 3.947 20 F -0.105 7.105 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.115 0.885 24 H 0.144 0.856 25 H 0.139 0.861 26 H 0.146 0.854 27 H 0.111 0.889 28 H 0.133 0.867 29 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.043 -0.350 -2.099 13.215 hybrid contribution -0.919 -0.003 0.908 1.292 sum -13.962 -0.353 -1.190 14.017 Atomic orbital electron populations 1.22997 0.78951 1.03527 1.01072 1.86125 1.20905 1.26485 1.89239 1.19088 0.90963 0.85113 1.00922 1.20857 0.99290 0.91746 1.10850 1.20851 0.94642 0.96594 0.99219 1.20840 0.93067 0.98297 1.03813 1.21881 1.02316 0.90096 0.93112 1.18189 0.80201 0.89412 0.97593 0.92675 1.59153 1.67108 1.03945 1.03168 1.20675 0.91728 1.52445 0.91905 0.92907 1.24916 0.96818 0.94014 0.96430 1.70092 1.01900 1.45452 1.30635 0.86763 0.77633 0.78770 0.85340 1.20263 1.21273 1.20309 1.16883 0.85096 0.83481 1.09191 1.91481 1.76537 1.48448 1.94013 0.92862 0.92900 0.88526 0.85580 0.86050 0.85443 0.88900 0.86725 0.93312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 15 2 O -0.31 -5.32 10.36 -19.61 -0.20 -5.52 15 3 C 0.08 1.56 6.69 -39.18 -0.26 1.30 15 4 C -0.21 -3.19 9.04 -39.45 -0.36 -3.55 15 5 C -0.09 -1.45 10.04 -39.59 -0.40 -1.84 15 6 C -0.14 -2.56 9.24 -39.56 -0.37 -2.92 15 7 C -0.07 -1.53 5.02 -104.58 -0.52 -2.06 15 8 C 0.26 6.47 2.57 -70.02 -0.18 6.29 15 9 H 0.06 1.57 7.94 -51.92 -0.41 1.16 15 10 N -0.81 -18.66 8.02 -6.65 -0.05 -18.72 15 11 C -0.53 -14.85 8.70 -34.44 -0.30 -15.15 15 12 H 0.05 1.50 7.74 -52.48 -0.41 1.10 15 13 C 0.09 2.42 5.39 -17.82 -0.10 2.32 15 14 N -0.85 -24.88 12.77 55.43 0.71 -24.17 15 15 Si 0.89 21.76 29.54 -169.99 -5.02 16.73 15 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 17 H -0.29 -6.95 7.11 56.52 0.40 -6.54 15 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 19 C 0.07 1.61 7.24 -39.30 -0.28 1.33 15 20 F -0.13 -3.03 16.51 2.25 0.04 -2.99 15 21 H 0.05 0.52 7.66 -51.93 -0.40 0.12 15 22 H 0.05 0.50 7.66 -51.93 -0.40 0.10 15 23 H 0.10 0.82 8.14 -51.93 -0.42 0.40 15 24 H 0.13 1.50 6.30 -52.48 -0.33 1.16 15 25 H 0.12 1.44 8.06 -52.49 -0.42 1.01 15 26 H 0.13 2.12 6.24 -52.49 -0.33 1.79 15 27 H 0.30 6.13 9.06 -39.29 -0.36 5.77 15 28 H 0.32 6.90 7.28 -39.30 -0.29 6.61 15 29 H 0.26 7.23 8.31 -40.82 -0.34 6.89 15 LS Contribution 256.65 15.07 3.87 3.87 Total: -1.00 -31.55 256.65 -5.33 -36.88 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -2.89 Total: 6.88 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -1.78 Total: -12.96 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 0.65 Total: -42.89 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.20 Total: -5.52 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.04 Total: -2.99 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.55 -5.33 -36.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095683178.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.402 kcal (2) G-P(sol) polarization free energy of solvation -31.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds