Wall clock time and date at job start Mon Mar 30 2020 20:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38420 * 122.53661 * 2 1 4 4 C 1.33391 * 114.91421 * 179.97438 * 3 2 1 5 5 S 1.75882 * 109.59911 * 359.97438 * 4 3 2 6 6 C 1.33381 * 122.53488 * 179.71320 * 2 1 3 7 7 C 1.50700 * 125.20763 * 0.02562 * 6 2 1 8 8 H 1.08993 * 109.46993 * 15.00823 * 7 6 2 9 9 C 1.50694 * 109.47593 * 255.00211 * 7 6 2 10 10 H 1.07999 * 120.00054 * 295.81102 * 9 7 6 11 11 C 1.37876 * 120.00151 * 115.80591 * 9 7 6 12 12 N 1.31515 * 119.99776 * 6.63419 * 11 9 7 13 13 Si 1.86796 * 120.00176 * 186.64145 * 11 9 7 14 14 H 1.48495 * 109.47332 * 89.99784 * 13 11 9 15 15 H 1.48502 * 109.46937 * 209.99857 * 13 11 9 16 16 H 1.48506 * 109.46910 * 329.99475 * 13 11 9 17 17 N 1.46905 * 109.47073 * 135.00204 * 7 6 2 18 18 C 1.46897 * 110.99954 * 173.94023 * 17 7 6 19 19 C 1.46899 * 110.99796 * 297.89422 * 17 7 6 20 20 H 1.08996 * 109.47569 * 90.02112 * 1 2 3 21 21 H 1.09005 * 109.47118 * 330.02101 * 1 2 3 22 22 H 1.08999 * 109.47152 * 210.02814 * 1 2 3 23 23 H 1.07997 * 122.54669 * 359.95549 * 3 2 1 24 24 H 1.08010 * 125.19902 * 179.97438 * 4 3 2 25 25 H 0.96998 * 120.00225 * 180.02562 * 12 11 9 26 26 H 1.08997 * 109.47325 * 54.31052 * 18 17 7 27 27 H 1.09002 * 109.47262 * 174.31020 * 18 17 7 28 28 H 1.09002 * 109.47176 * 294.30613 * 18 17 7 29 29 H 1.08998 * 109.47576 * 56.05042 * 19 17 7 30 30 H 1.09004 * 109.47022 * 176.04968 * 19 17 7 31 31 H 1.09006 * 109.47223 * 296.03992 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1669 0.0000 4 6 3.5736 0.9900 0.0005 5 16 3.9386 -0.7305 0.0018 6 6 2.2244 -1.1245 0.0056 7 6 1.6536 -2.5192 0.0121 8 1 0.5975 -2.4807 -0.2546 9 6 1.8030 -3.1169 1.3873 10 1 2.7873 -3.2975 1.7936 11 6 0.6833 -3.4331 2.1270 12 7 -0.5114 -3.3362 1.5856 13 14 0.8629 -3.9988 3.8981 14 1 0.8218 -2.8204 4.8008 15 1 -0.2495 -4.9219 4.2381 16 1 2.1594 -4.7040 4.0634 17 7 2.3749 -3.3480 -0.9631 18 6 1.9435 -4.7499 -0.8837 19 6 2.2097 -2.8226 -2.3249 20 1 -0.3634 -0.0004 -1.0276 21 1 -0.3633 0.8902 0.5135 22 1 -0.3633 -0.8897 0.5143 23 1 1.7965 2.1464 -0.0007 24 1 4.3078 1.7822 0.0002 25 1 -1.2992 -3.5582 2.1060 26 1 0.8603 -4.8035 -0.9924 27 1 2.4174 -5.3217 -1.6816 28 1 2.2327 -5.1650 0.0818 29 1 2.5365 -1.7832 -2.3556 30 1 2.8099 -3.4128 -3.0174 31 1 1.1599 -2.8821 -2.6124 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259559727.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:45:11 Heat of formation + Delta-G solvation = 31.829668 kcal Electronic energy + Delta-G solvation = -13947.854421 eV Core-core repulsion = 11741.896707 eV Total energy + Delta-G solvation = -2205.957714 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.86528 -35.96451 -32.63171 -30.33105 -28.30652 -26.87188 -25.20003 -23.55496 -22.00794 -20.08667 -17.42537 -16.79245 -15.94493 -14.92086 -14.38135 -13.95547 -13.59847 -13.40923 -12.90146 -12.38111 -12.14743 -11.70863 -11.40737 -11.22971 -11.05005 -10.91387 -10.89311 -10.75545 -10.53483 -10.42263 -9.96906 -9.61733 -9.48933 -8.67597 -7.59907 -7.37131 -7.14138 -6.18485 -4.22187 1.98205 2.62508 3.06262 3.24206 3.31280 3.35107 3.60329 4.31457 5.04622 5.32587 5.67756 6.01186 6.08564 6.22521 6.23970 6.28335 6.34164 6.46802 6.56753 6.60408 6.77590 6.89118 6.93185 7.11278 7.33712 7.44030 7.52520 7.74265 7.89444 8.21086 8.52740 8.91082 9.41116 10.86410 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.023678 B = 0.012433 C = 0.010686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.268507 B = 2251.448582 C = 2619.518357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.160 4.160 3 C -0.117 4.117 4 C -0.266 4.266 5 S 0.088 5.912 6 C -0.083 4.083 7 C 0.248 3.752 8 H 0.070 0.930 9 C -0.495 4.495 10 H 0.063 0.937 11 C 0.071 3.929 12 N -0.886 5.886 13 Si 0.897 3.103 14 H -0.278 1.278 15 H -0.286 1.286 16 H -0.271 1.271 17 N -0.548 5.548 18 C 0.054 3.946 19 C 0.023 3.977 20 H 0.048 0.952 21 H 0.047 0.953 22 H 0.092 0.908 23 H 0.122 0.878 24 H 0.147 0.853 25 H 0.265 0.735 26 H 0.019 0.981 27 H 0.036 0.964 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.186 3.920 -3.877 6.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.170 4.170 3 C -0.149 4.149 4 C -0.401 4.401 5 S 0.353 5.647 6 C -0.202 4.202 7 C 0.141 3.859 8 H 0.087 0.913 9 C -0.534 4.534 10 H 0.081 0.919 11 C -0.133 4.133 12 N -0.523 5.523 13 Si 0.724 3.276 14 H -0.204 1.204 15 H -0.212 1.212 16 H -0.196 1.196 17 N -0.273 5.273 18 C -0.095 4.095 19 C -0.126 4.126 20 H 0.067 0.933 21 H 0.066 0.934 22 H 0.111 0.889 23 H 0.140 0.860 24 H 0.165 0.835 25 H 0.075 0.925 26 H 0.038 0.962 27 H 0.055 0.945 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 4.851 3.072 -3.727 6.845 hybrid contribution -2.079 0.745 0.834 2.360 sum 2.773 3.816 -2.893 5.534 Atomic orbital electron populations 1.20474 0.90470 1.03221 1.00767 1.18693 0.97242 0.91527 1.09584 1.19898 0.92971 0.98512 1.03488 1.25346 0.99334 0.99975 1.15464 1.84097 1.09070 0.98032 1.73548 1.25222 0.93652 1.00394 1.00918 1.18287 0.93250 0.82780 0.91631 0.91263 1.20920 0.93100 1.40525 0.98851 0.91881 1.24997 0.95245 0.94514 0.98575 1.69853 0.97864 1.48023 1.36590 0.86508 0.77962 0.78649 0.84497 1.20382 1.21159 1.19551 1.62318 1.58760 1.02991 1.03270 1.21933 0.97425 0.89063 1.01053 1.22334 0.98150 1.00159 0.91932 0.93324 0.93435 0.88930 0.86032 0.83536 0.92470 0.96203 0.94501 0.90871 0.92413 0.93178 0.96965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.82 9.60 36.01 0.35 -1.48 16 2 C -0.16 -3.41 5.80 -106.25 -0.62 -4.03 16 3 C -0.12 -2.19 9.98 -41.21 -0.41 -2.60 16 4 C -0.27 -4.78 11.23 29.04 0.33 -4.45 16 5 S 0.09 1.77 23.03 -107.50 -2.48 -0.70 16 6 C -0.08 -1.88 3.93 -36.01 -0.14 -2.02 16 7 C 0.25 6.03 1.90 -70.02 -0.13 5.90 16 8 H 0.07 1.86 5.43 -51.93 -0.28 1.58 16 9 C -0.49 -13.03 6.89 -34.44 -0.24 -13.26 16 10 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 11 C 0.07 1.85 5.45 -17.82 -0.10 1.76 16 12 N -0.89 -23.77 12.31 55.43 0.68 -23.09 16 13 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 N -0.55 -12.22 4.73 -246.00 -1.16 -13.38 16 18 C 0.05 1.14 9.14 60.06 0.55 1.69 16 19 C 0.02 0.46 9.37 60.06 0.56 1.02 16 20 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 21 H 0.05 0.85 8.13 -51.93 -0.42 0.42 16 22 H 0.09 2.16 6.61 -51.93 -0.34 1.82 16 23 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 24 H 0.15 2.18 8.06 -52.48 -0.42 1.75 16 25 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 26 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 27 H 0.04 0.67 8.07 -51.93 -0.42 0.25 16 28 H 0.07 1.64 7.16 -51.93 -0.37 1.27 16 29 H 0.06 1.13 6.89 -51.93 -0.36 0.77 16 30 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 31 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 271.28 15.07 4.09 4.09 Total: -1.00 -26.93 271.28 -8.02 -34.95 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -4.28 Total: -0.08 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: 0.15 Total: -17.48 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: -0.48 Total: -36.47 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.48 Total: -0.70 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -26.93 -8.02 -34.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259559727.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.783 kcal (2) G-P(sol) polarization free energy of solvation -26.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds