Wall clock time and date at job start Mon Mar 30 2020 20:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38420 * 122.53661 * 2 1 4 4 C 1.33391 * 114.91421 * 179.97438 * 3 2 1 5 5 S 1.75882 * 109.59911 * 359.97438 * 4 3 2 6 6 C 1.33381 * 122.53488 * 179.71320 * 2 1 3 7 7 C 1.50700 * 125.20763 * 0.02562 * 6 2 1 8 8 H 1.08993 * 109.46993 * 15.00823 * 7 6 2 9 9 C 1.50694 * 109.47593 * 255.00211 * 7 6 2 10 10 H 1.07999 * 120.00054 * 295.81102 * 9 7 6 11 11 C 1.37876 * 120.00151 * 115.80591 * 9 7 6 12 12 N 1.31515 * 119.99776 * 6.63419 * 11 9 7 13 13 Si 1.86796 * 120.00176 * 186.64145 * 11 9 7 14 14 H 1.48495 * 109.47332 * 89.99784 * 13 11 9 15 15 H 1.48502 * 109.46937 * 209.99857 * 13 11 9 16 16 H 1.48506 * 109.46910 * 329.99475 * 13 11 9 17 17 N 1.46905 * 109.47073 * 135.00204 * 7 6 2 18 18 C 1.46897 * 110.99954 * 173.94023 * 17 7 6 19 19 C 1.46899 * 110.99796 * 297.89422 * 17 7 6 20 20 H 1.08996 * 109.47569 * 90.02112 * 1 2 3 21 21 H 1.09005 * 109.47118 * 330.02101 * 1 2 3 22 22 H 1.08999 * 109.47152 * 210.02814 * 1 2 3 23 23 H 1.07997 * 122.54669 * 359.95549 * 3 2 1 24 24 H 1.08010 * 125.19902 * 179.97438 * 4 3 2 25 25 H 0.96998 * 120.00225 * 180.02562 * 12 11 9 26 26 H 1.08997 * 109.47325 * 54.31052 * 18 17 7 27 27 H 1.09002 * 109.47262 * 174.31020 * 18 17 7 28 28 H 1.09002 * 109.47176 * 294.30613 * 18 17 7 29 29 H 1.08998 * 109.47576 * 56.05042 * 19 17 7 30 30 H 1.09004 * 109.47022 * 176.04968 * 19 17 7 31 31 H 1.09006 * 109.47223 * 296.03992 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1669 0.0000 4 6 3.5736 0.9900 0.0005 5 16 3.9386 -0.7305 0.0018 6 6 2.2244 -1.1245 0.0056 7 6 1.6536 -2.5192 0.0121 8 1 0.5975 -2.4807 -0.2546 9 6 1.8030 -3.1169 1.3873 10 1 2.7873 -3.2975 1.7936 11 6 0.6833 -3.4331 2.1270 12 7 -0.5114 -3.3362 1.5856 13 14 0.8629 -3.9988 3.8981 14 1 0.8218 -2.8204 4.8008 15 1 -0.2495 -4.9219 4.2381 16 1 2.1594 -4.7040 4.0634 17 7 2.3749 -3.3480 -0.9631 18 6 1.9435 -4.7499 -0.8837 19 6 2.2097 -2.8226 -2.3249 20 1 -0.3634 -0.0004 -1.0276 21 1 -0.3633 0.8902 0.5135 22 1 -0.3633 -0.8897 0.5143 23 1 1.7965 2.1464 -0.0007 24 1 4.3078 1.7822 0.0002 25 1 -1.2992 -3.5582 2.1060 26 1 0.8603 -4.8035 -0.9924 27 1 2.4174 -5.3217 -1.6816 28 1 2.2327 -5.1650 0.0818 29 1 2.5365 -1.7832 -2.3556 30 1 2.8099 -3.4128 -3.0174 31 1 1.1599 -2.8821 -2.6124 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259559727.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:45:11 Heat of formation + Delta-G solvation = 16.110404 kcal Electronic energy + Delta-G solvation = -13948.536059 eV Core-core repulsion = 11741.896707 eV Total energy + Delta-G solvation = -2206.639352 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.50062 -37.63701 -34.57913 -31.93428 -30.04067 -28.57646 -26.94864 -25.35127 -23.54166 -21.81493 -19.05642 -18.65792 -17.63473 -16.75546 -15.98593 -15.68852 -15.37284 -14.99733 -14.49504 -14.02266 -13.96260 -13.38838 -13.06315 -12.89990 -12.81341 -12.61378 -12.48630 -12.46973 -12.26712 -12.06765 -11.75829 -11.37787 -11.28027 -10.66915 -9.18787 -8.97552 -8.91103 -8.15505 -6.26005 0.43329 1.08392 1.39235 1.41581 1.50156 1.50671 2.04194 2.39949 3.10168 3.57632 4.28989 4.45323 4.52618 4.62616 4.68351 4.74595 4.81387 4.88871 4.92256 5.01191 5.07074 5.26180 5.32360 5.36719 5.47175 5.69279 5.85751 5.90324 6.07154 6.38118 6.74654 6.90736 7.39666 8.87589 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.023678 B = 0.012433 C = 0.010686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.268507 B = 2251.448582 C = 2619.518357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.163 4.163 3 C -0.129 4.129 4 C -0.241 4.241 5 S 0.082 5.918 6 C -0.125 4.125 7 C 0.257 3.743 8 H 0.037 0.963 9 C -0.505 4.505 10 H 0.047 0.953 11 C 0.031 3.969 12 N -0.909 5.909 13 Si 0.948 3.052 14 H -0.278 1.278 15 H -0.281 1.281 16 H -0.269 1.269 17 N -0.556 5.556 18 C 0.061 3.939 19 C 0.029 3.971 20 H 0.059 0.941 21 H 0.070 0.930 22 H 0.055 0.945 23 H 0.154 0.846 24 H 0.186 0.814 25 H 0.265 0.735 26 H -0.001 1.001 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.288 5.309 -4.170 7.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.175 4.175 3 C -0.160 4.160 4 C -0.376 4.376 5 S 0.346 5.654 6 C -0.244 4.244 7 C 0.149 3.851 8 H 0.054 0.946 9 C -0.544 4.544 10 H 0.065 0.935 11 C -0.170 4.170 12 N -0.548 5.548 13 Si 0.774 3.226 14 H -0.204 1.204 15 H -0.206 1.206 16 H -0.194 1.194 17 N -0.280 5.280 18 C -0.087 4.087 19 C -0.120 4.120 20 H 0.078 0.922 21 H 0.088 0.912 22 H 0.074 0.926 23 H 0.172 0.828 24 H 0.203 0.797 25 H 0.074 0.926 26 H 0.017 0.983 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 5.960 4.454 -4.027 8.461 hybrid contribution -2.370 0.380 0.850 2.546 sum 3.590 4.834 -3.177 6.808 Atomic orbital electron populations 1.20405 0.90363 1.02469 1.01260 1.19071 0.97748 0.92333 1.08309 1.20131 0.93155 0.98900 1.03764 1.25786 0.99901 0.99260 1.12679 1.84003 1.07344 1.00262 1.73742 1.25033 0.95478 0.99868 1.03980 1.17964 0.91884 0.84193 0.91057 0.94567 1.21007 0.92301 1.40991 1.00138 0.93518 1.25582 0.95034 0.94819 1.01561 1.69961 0.98224 1.49018 1.37550 0.85704 0.77932 0.78206 0.80757 1.20367 1.20617 1.19379 1.62282 1.58225 1.03108 1.04433 1.21872 0.96323 0.89245 1.01307 1.22334 0.98313 1.00529 0.90817 0.92211 0.91152 0.92566 0.82837 0.79683 0.92572 0.98277 0.91112 0.92733 0.92518 0.90434 0.97541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.43 9.60 71.24 0.68 -2.75 16 2 C -0.16 -6.76 5.80 -20.92 -0.12 -6.88 16 3 C -0.13 -4.41 9.98 21.22 0.21 -4.19 16 4 C -0.24 -7.77 11.23 66.72 0.75 -7.02 16 5 S 0.08 3.18 23.03 -56.49 -1.30 1.88 16 6 C -0.13 -5.64 3.93 24.59 0.10 -5.54 16 7 C 0.26 12.76 1.90 43.42 0.08 12.84 16 8 H 0.04 2.04 5.43 -2.39 -0.01 2.02 16 9 C -0.51 -27.25 6.89 25.60 0.18 -27.07 16 10 H 0.05 2.61 7.82 -2.91 -0.02 2.59 16 11 C 0.03 1.68 5.45 84.65 0.46 2.14 16 12 N -0.91 -50.27 12.31 21.45 0.26 -50.01 16 13 Si 0.95 43.07 29.54 68.60 2.03 45.09 16 14 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 15 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 16 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 17 N -0.56 -24.81 4.73 -932.22 -4.41 -29.23 16 18 C 0.06 2.61 9.14 127.69 1.17 3.77 16 19 C 0.03 1.10 9.37 127.69 1.20 2.29 16 20 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 21 H 0.07 2.41 8.13 -2.38 -0.02 2.39 16 22 H 0.06 2.68 6.61 -2.39 -0.02 2.67 16 23 H 0.15 4.24 8.06 -2.91 -0.02 4.22 16 24 H 0.19 4.50 8.06 -2.91 -0.02 4.48 16 25 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 26 H 0.00 -0.07 8.12 -2.39 -0.02 -0.09 16 27 H 0.07 2.49 8.07 -2.39 -0.02 2.47 16 28 H 0.05 2.50 7.16 -2.39 -0.02 2.48 16 29 H 0.06 2.16 6.89 -2.39 -0.02 2.14 16 30 H 0.08 2.49 8.13 -2.39 -0.02 2.47 16 31 H 0.01 0.24 8.14 -2.38 -0.02 0.22 16 Total: -1.00 -58.44 271.28 2.38 -56.05 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 1.10 Total: 8.62 kcal Atomic # 6 Polarization: -37.12 SS G_CDS: 4.70 Total: -32.41 kcal Atomic # 7 Polarization: -75.09 SS G_CDS: -4.15 Total: -79.24 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -1.30 Total: 1.88 kcal Total: -58.44 2.38 -56.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259559727.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.164 kcal (2) G-P(sol) polarization free energy of solvation -58.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds