Wall clock time and date at job start Mon Mar 30 2020 20:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33390 * 122.54312 * 2 1 4 4 S 1.75875 * 109.59459 * 179.97438 * 3 2 1 5 5 C 1.75885 * 90.97417 * 359.83182 * 4 3 2 6 6 C 1.33391 * 109.58761 * 0.29943 * 5 4 3 7 7 C 1.50703 * 122.53584 * 179.90387 * 6 5 4 8 8 H 1.09005 * 109.46976 * 179.70994 * 7 6 5 9 9 C 1.52993 * 109.47154 * 59.71494 * 7 6 5 10 10 N 1.46906 * 109.47378 * 64.99583 * 9 7 6 11 11 C 1.52999 * 109.47276 * 299.70970 * 7 6 5 12 12 C 1.50699 * 109.47100 * 184.99863 * 11 7 6 13 13 H 1.08007 * 120.00186 * 0.02562 * 12 11 7 14 14 C 1.37871 * 120.00019 * 179.97438 * 12 11 7 15 15 N 1.31516 * 120.00419 * 0.02562 * 14 12 11 16 16 Si 1.86808 * 120.00149 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46795 * 60.00342 * 16 14 12 18 18 H 1.48501 * 109.47050 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47151 * 300.00632 * 16 14 12 20 20 H 1.08997 * 109.47186 * 270.02403 * 1 2 3 21 21 H 1.09002 * 109.46979 * 30.02126 * 1 2 3 22 22 H 1.08997 * 109.47498 * 150.01717 * 1 2 3 23 23 H 1.08004 * 125.20153 * 359.94617 * 3 2 1 24 24 H 1.07993 * 125.20919 * 180.18100 * 5 4 3 25 25 H 1.09004 * 109.46862 * 304.99686 * 9 7 6 26 26 H 1.09000 * 109.47250 * 184.99709 * 9 7 6 27 27 H 1.00902 * 110.99567 * 179.97438 * 10 9 7 28 28 H 1.00901 * 111.00013 * 303.95621 * 10 9 7 29 29 H 1.08996 * 109.47242 * 304.99948 * 11 7 6 30 30 H 1.08997 * 109.46849 * 65.00073 * 11 7 6 31 31 H 0.96997 * 120.00690 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2246 1.1245 0.0000 4 16 3.9386 0.7304 0.0007 5 6 3.5737 -0.9902 0.0062 6 6 2.2515 -1.1670 0.0005 7 6 1.6165 -2.5336 0.0011 8 1 0.5314 -2.4301 0.0010 9 6 2.0555 -3.2995 1.2506 10 7 1.5312 -2.6268 2.4467 11 6 2.0557 -3.3006 -1.2479 12 6 1.3264 -4.6179 -1.3108 13 1 0.6199 -4.8815 -0.5375 14 6 1.5602 -5.4860 -2.3560 15 7 2.4200 -5.1649 -3.2979 16 14 0.6556 -7.1186 -2.4344 17 1 -0.8075 -6.8714 -2.4938 18 1 1.0820 -7.8630 -3.6465 19 1 0.9736 -7.9193 -1.2248 20 1 -0.3633 0.0004 1.0276 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3634 -0.8901 -0.5135 23 1 1.8155 2.1240 -0.0008 24 1 4.3076 -1.7824 0.0112 25 1 3.1443 -3.3261 1.2966 26 1 1.6687 -4.3176 1.2074 27 1 1.8075 -3.1143 3.2859 28 1 1.8234 -1.6615 2.4760 29 1 1.8221 -2.7132 -2.1358 30 1 3.1296 -3.4816 -1.2041 31 1 2.5848 -5.7758 -4.0330 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260220133.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:45:47 Heat of formation + Delta-G solvation = 11.286913 kcal Electronic energy + Delta-G solvation = -13511.472926 eV Core-core repulsion = 11304.624411 eV Total energy + Delta-G solvation = -2206.848514 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.81795 -34.97025 -32.81944 -31.03454 -29.77692 -27.13287 -25.27277 -23.12092 -22.41249 -19.68644 -17.49486 -17.17063 -16.11249 -15.39684 -14.65960 -14.35105 -14.06199 -13.48710 -13.10507 -12.76104 -12.28895 -12.20151 -11.78015 -11.59180 -11.53655 -11.09824 -10.87797 -10.72288 -10.55492 -10.24024 -9.84505 -9.48703 -9.03218 -8.35047 -8.22092 -8.17951 -7.78534 -5.99213 -4.01687 1.42857 2.08232 2.38954 3.16393 3.33908 3.38517 3.41201 4.46513 5.13161 5.27476 5.37361 5.40071 5.72701 5.81900 5.85803 5.98267 6.02771 6.18447 6.30316 6.47968 6.68506 6.72244 6.90416 7.09694 7.13549 7.58350 7.73310 7.78189 7.91332 8.00690 8.40847 9.04561 9.62178 11.11723 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.033646 B = 0.007620 C = 0.007202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.988374 B = 3673.531834 C = 3886.905409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.084 4.084 3 C -0.227 4.227 4 S 0.047 5.953 5 C -0.207 4.207 6 C -0.074 4.074 7 C -0.028 4.028 8 H 0.079 0.921 9 C 0.078 3.922 10 N -0.852 5.852 11 C 0.036 3.964 12 C -0.519 4.519 13 H 0.058 0.942 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.890 3.110 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.277 1.277 20 H 0.069 0.931 21 H 0.058 0.942 22 H 0.076 0.924 23 H 0.156 0.844 24 H 0.160 0.840 25 H 0.017 0.983 26 H 0.086 0.914 27 H 0.330 0.670 28 H 0.331 0.669 29 H 0.018 0.982 30 H 0.016 0.984 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.383 9.984 8.094 12.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.097 4.097 3 C -0.362 4.362 4 S 0.311 5.689 5 C -0.341 4.341 6 C -0.086 4.086 7 C -0.050 4.050 8 H 0.097 0.903 9 C -0.052 4.052 10 N -0.380 5.380 11 C -0.002 4.002 12 C -0.557 4.557 13 H 0.076 0.924 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.718 3.282 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.203 1.203 20 H 0.088 0.912 21 H 0.077 0.923 22 H 0.095 0.905 23 H 0.174 0.826 24 H 0.177 0.823 25 H 0.035 0.965 26 H 0.104 0.896 27 H 0.141 0.859 28 H 0.143 0.857 29 H 0.037 0.963 30 H 0.034 0.966 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.131 10.631 7.607 13.121 hybrid contribution -0.530 -1.560 -0.007 1.648 sum 0.602 9.071 7.599 11.849 Atomic orbital electron populations 1.20558 0.89997 1.02691 1.02207 1.18925 0.97458 0.91637 1.01677 1.25232 0.95485 1.01806 1.13697 1.83930 1.07139 1.02387 1.75456 1.25326 0.99553 0.97424 1.11813 1.19208 0.92407 0.97030 0.99946 1.20240 0.99746 0.88198 0.96791 0.90273 1.21858 0.95825 0.98859 0.88686 1.58859 1.67898 1.06354 1.04857 1.19105 0.96546 0.94009 0.90525 1.21210 1.24132 1.02141 1.08213 0.92378 1.25010 0.95302 0.98326 0.95699 1.69957 1.34660 1.36735 1.12020 0.86689 0.80257 0.83917 0.77326 1.20203 1.21384 1.20279 0.91211 0.92313 0.90507 0.82627 0.82290 0.96499 0.89598 0.85940 0.85681 0.96316 0.96579 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.36 9.64 36.01 0.35 -1.02 16 2 C -0.08 -1.36 5.80 -106.25 -0.62 -1.97 16 3 C -0.23 -3.29 10.98 29.04 0.32 -2.98 16 4 S 0.05 0.68 23.34 -107.50 -2.51 -1.83 16 5 C -0.21 -3.57 9.96 29.04 0.29 -3.28 16 6 C -0.07 -1.35 3.70 -106.25 -0.39 -1.74 16 7 C -0.03 -0.58 2.13 -91.77 -0.20 -0.77 16 8 H 0.08 1.66 6.06 -51.93 -0.31 1.35 16 9 C 0.08 1.46 6.03 -3.82 -0.02 1.43 16 10 N -0.85 -13.32 9.62 -10.37 -0.10 -13.42 16 11 C 0.04 0.91 4.22 -27.88 -0.12 0.79 16 12 C -0.52 -14.24 8.34 -34.44 -0.29 -14.53 16 13 H 0.06 1.55 7.08 -52.48 -0.37 1.18 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 16 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 21 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 22 H 0.08 1.22 6.55 -51.93 -0.34 0.88 16 23 H 0.16 1.84 8.06 -52.48 -0.42 1.42 16 24 H 0.16 2.76 7.87 -52.49 -0.41 2.35 16 25 H 0.02 0.31 7.55 -51.93 -0.39 -0.08 16 26 H 0.09 1.77 6.82 -51.93 -0.35 1.41 16 27 H 0.33 4.42 9.08 -39.29 -0.36 4.06 16 28 H 0.33 4.98 8.07 -39.29 -0.32 4.67 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.02 0.43 7.99 -51.93 -0.41 0.01 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 271.20 15.07 4.09 4.09 Total: -1.00 -29.16 271.20 -7.68 -36.84 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -4.10 Total: 6.30 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -0.77 Total: -22.53 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.64 Total: -39.34 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -2.51 Total: -1.83 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.16 -7.68 -36.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260220133.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.127 kcal (2) G-P(sol) polarization free energy of solvation -29.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds