Wall clock time and date at job start Mon Mar 30 2020 20:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86800 * 120.00055 * 2 1 4 4 H 1.48504 * 109.47482 * 270.00292 * 3 2 1 5 5 H 1.48503 * 109.47039 * 30.00376 * 3 2 1 6 6 H 1.48501 * 109.47381 * 150.00298 * 3 2 1 7 7 C 1.40048 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00027 * 179.97438 * 7 2 1 9 9 C 1.46374 * 119.99799 * 359.97438 * 7 2 1 10 10 O 1.21681 * 120.00092 * 0.02562 * 9 7 2 11 11 N 1.34779 * 119.99679 * 180.02562 * 9 7 2 12 12 C 1.46504 * 119.99786 * 179.97438 * 11 9 7 13 13 H 1.09002 * 110.97623 * 30.84408 * 12 11 9 14 14 C 1.54992 * 111.11458 * 266.62987 * 12 11 9 15 15 O 1.43840 * 105.16874 * 278.20907 * 14 12 11 16 16 C 1.42625 * 109.66948 * 335.67500 * 15 14 12 17 17 C 1.53197 * 115.40717 * 231.85931 * 16 15 14 18 18 C 1.53882 * 86.91531 * 217.80270 * 17 16 15 19 19 C 1.53212 * 115.36757 * 131.75642 * 16 15 14 20 20 C 1.53851 * 108.27080 * 1.84207 * 16 15 14 21 21 H 0.97000 * 119.99541 * 359.97438 * 1 2 3 22 22 H 0.96993 * 120.00249 * 0.02562 * 11 9 7 23 23 H 1.09000 * 110.30395 * 159.28273 * 14 12 11 24 24 H 1.09004 * 110.30146 * 37.13190 * 14 12 11 25 25 H 1.08995 * 113.63650 * 332.30798 * 17 16 15 26 26 H 1.08998 * 113.63411 * 103.29385 * 17 16 15 27 27 H 1.09007 * 113.60085 * 270.43116 * 18 17 16 28 28 H 1.09003 * 113.67433 * 139.59192 * 18 17 16 29 29 H 1.08992 * 113.64204 * 256.74289 * 19 16 15 30 30 H 1.09006 * 113.63983 * 27.73366 * 19 16 15 31 31 H 1.09004 * 110.91014 * 139.20953 * 20 16 15 32 32 H 1.08997 * 110.91421 * 262.82898 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4382 2.6526 0.7001 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2128 -0.0005 8 1 3.0869 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0583 -2.4805 -0.0005 11 7 1.9490 -3.6477 -0.0005 12 6 1.2165 -4.9164 0.0000 13 1 0.2645 -4.8176 -0.5214 14 6 1.0115 -5.4421 1.4436 15 8 2.2457 -6.0976 1.7843 16 6 2.9128 -6.5135 0.5942 17 6 3.3369 -7.9852 0.5585 18 6 4.6117 -7.5141 -0.1633 19 6 4.3986 -6.1483 0.5127 20 6 2.0744 -6.0585 -0.6129 21 1 -0.4849 0.8401 0.0004 22 1 2.9190 -3.6477 -0.0002 23 1 0.1852 -6.1523 1.4737 24 1 0.8232 -4.6125 2.1250 25 1 3.5245 -8.4099 1.5446 26 1 2.6915 -8.6110 -0.0578 27 1 4.5129 -7.4840 -1.2485 28 1 5.5155 -8.0273 0.1651 29 1 4.6050 -5.3003 -0.1402 30 1 4.8816 -6.0622 1.4862 31 1 2.7140 -5.6798 -1.4102 32 1 1.4420 -6.8690 -0.9750 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606267421.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:47:25 Heat of formation + Delta-G solvation = -68.351895 kcal Electronic energy + Delta-G solvation = -15828.514196 eV Core-core repulsion = 13175.459413 eV Total energy + Delta-G solvation = -2653.054783 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.30019 -37.28040 -35.89795 -33.24953 -32.30294 -29.72210 -27.09659 -26.03258 -25.66162 -22.72857 -21.49770 -19.55741 -18.71081 -17.35317 -16.20862 -15.74124 -15.24284 -14.85637 -14.57039 -14.08715 -13.83081 -13.31782 -12.51294 -12.44664 -12.08870 -11.83258 -11.47749 -11.35202 -11.06491 -11.05192 -10.97542 -10.68154 -10.58873 -10.45586 -10.23050 -10.09873 -9.12563 -8.86160 -7.65916 -7.54511 -6.20711 -4.66206 3.13478 3.20487 3.24097 4.08420 4.13005 4.51768 4.60885 4.66155 4.77530 4.88966 4.92716 5.12955 5.34833 5.53335 5.71674 5.80383 5.81770 5.87662 5.92224 5.94625 6.07486 6.11182 6.22255 6.39799 6.47401 6.48355 7.41962 7.44915 7.89850 8.06377 8.31226 9.00763 9.49761 10.57295 10.75383 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.045744 B = 0.006833 C = 0.006313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.958842 B = 4096.492018 C = 4434.046059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.581 6.581 11 N -0.752 5.752 12 C 0.127 3.873 13 H 0.098 0.902 14 C 0.036 3.964 15 O -0.367 6.367 16 C 0.085 3.915 17 C -0.142 4.142 18 C -0.139 4.139 19 C -0.141 4.141 20 C -0.140 4.140 21 H 0.268 0.732 22 H 0.381 0.619 23 H 0.057 0.943 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.318 -11.550 -0.744 13.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.086 0.914 9 C 0.359 3.641 10 O -0.464 6.464 11 N -0.406 5.406 12 C 0.019 3.981 13 H 0.116 0.884 14 C -0.042 4.042 15 O -0.286 6.286 16 C 0.045 3.955 17 C -0.180 4.180 18 C -0.177 4.177 19 C -0.178 4.178 20 C -0.178 4.178 21 H 0.079 0.921 22 H 0.213 0.787 23 H 0.075 0.925 24 H 0.107 0.893 25 H 0.103 0.897 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.299 -11.456 -0.540 13.084 hybrid contribution 0.808 0.798 -0.129 1.143 sum 7.107 -10.658 -0.669 12.827 Atomic orbital electron populations 1.70019 1.07059 1.27301 1.35247 1.25705 0.94623 1.00301 0.92579 0.86369 0.80187 0.81360 0.78825 1.19734 1.20428 1.18894 1.20878 0.93613 0.89348 1.54281 0.91428 1.18251 0.87226 0.82408 0.76196 1.90594 1.14035 1.86752 1.55018 1.46058 1.08509 1.04097 1.81965 1.22069 0.96902 0.85094 0.94032 0.88417 1.23987 0.85820 0.95980 0.98370 1.88320 1.34906 1.76449 1.28889 1.23072 0.92356 0.94255 0.85816 1.23327 0.97288 0.96310 1.01050 1.22688 0.97933 0.97312 0.99764 1.23298 0.95645 0.97476 1.01406 1.23147 0.98834 0.98665 0.97146 0.92084 0.78678 0.92511 0.89276 0.89670 0.91357 0.90107 0.91176 0.90877 0.89501 0.89561 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.99 11.83 55.55 0.66 -22.33 16 2 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 3 Si 0.91 20.17 29.56 -169.99 -5.02 15.14 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.54 -15.40 9.54 -35.63 -0.34 -15.74 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 9 C 0.55 15.69 7.75 -12.99 -0.10 15.59 16 10 O -0.58 -18.58 14.66 5.21 0.08 -18.51 16 11 N -0.75 -16.84 5.20 -52.94 -0.28 -17.12 16 12 C 0.13 2.43 3.49 -65.58 -0.23 2.20 16 13 H 0.10 2.05 7.54 -51.93 -0.39 1.65 16 14 C 0.04 0.67 7.48 38.21 0.29 0.96 16 15 O -0.37 -6.51 11.13 -35.23 -0.39 -6.91 16 16 C 0.09 1.24 1.65 -89.97 -0.15 1.09 16 17 C -0.14 -1.67 7.60 -26.17 -0.20 -1.87 16 18 C -0.14 -1.47 7.88 -25.81 -0.20 -1.68 16 19 C -0.14 -1.83 7.51 -26.16 -0.20 -2.03 16 20 C -0.14 -2.05 5.73 -25.00 -0.14 -2.19 16 21 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 22 H 0.38 7.77 8.52 -40.82 -0.35 7.42 16 23 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 25 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.07 0.73 8.00 -51.93 -0.42 0.31 16 27 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.95 7.87 -51.93 -0.41 0.54 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.09 1.21 7.85 -51.93 -0.41 0.80 16 32 H 0.08 1.05 8.00 -51.93 -0.42 0.64 16 LS Contribution 270.60 15.07 4.08 4.08 Total: -1.00 -33.20 270.60 -6.72 -39.92 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -4.47 Total: 7.04 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -1.37 Total: -1.31 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.38 Total: -39.45 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.32 Total: -25.41 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -33.20 -6.72 -39.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606267421.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.436 kcal (2) G-P(sol) polarization free energy of solvation -33.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds