Wall clock time and date at job start Mon Mar 30 2020 20:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00142 * 2 1 4 4 H 1.48501 * 109.46994 * 270.00163 * 3 2 1 5 5 H 1.48505 * 109.47035 * 30.00004 * 3 2 1 6 6 H 1.48502 * 109.47152 * 150.00110 * 3 2 1 7 7 C 1.37875 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00539 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99776 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.46964 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00329 * 180.02562 * 10 9 7 12 12 O 1.21289 * 119.99518 * 359.97438 * 11 10 9 13 13 C 1.50698 * 120.00564 * 179.97438 * 11 10 9 14 14 H 1.09003 * 109.23545 * 39.47859 * 13 11 10 15 15 C 1.52968 * 109.26387 * 279.99676 * 13 11 10 16 16 C 1.53456 * 108.42621 * 190.07468 * 15 13 11 17 17 C 1.53123 * 108.17251 * 66.14930 * 16 15 13 18 18 C 1.50108 * 109.90503 * 312.10388 * 17 16 15 19 19 N 1.37001 * 117.84865 * 196.32777 * 18 17 16 20 20 N 1.27582 * 124.29876 * 16.35084 * 18 17 16 21 21 H 0.97007 * 120.00000 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47199 * 59.99935 * 9 7 2 23 23 H 1.08996 * 109.47080 * 299.99672 * 9 7 2 24 24 H 0.96999 * 120.00102 * 359.97438 * 10 9 7 25 25 H 1.09004 * 109.67606 * 70.34822 * 15 13 11 26 26 H 1.09000 * 109.67702 * 309.81220 * 15 13 11 27 27 H 1.09004 * 109.72033 * 185.81491 * 16 15 13 28 28 H 1.08997 * 109.72118 * 306.47796 * 16 15 13 29 29 H 1.09001 * 109.40239 * 72.24177 * 17 16 15 30 30 H 1.08998 * 109.39538 * 192.05887 * 17 16 15 31 31 H 0.97004 * 120.00071 * 0.02562 * 19 18 17 32 32 H 0.97001 * 119.99970 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9998 -2.5752 -0.0001 11 6 5.3249 -2.8216 0.0009 12 8 6.1130 -1.8997 0.0014 13 6 5.8272 -4.2424 0.0014 14 1 5.1985 -4.8458 -0.6534 15 6 5.7581 -4.8017 1.4235 16 6 6.5014 -6.1439 1.4535 17 6 7.9861 -5.8734 1.1941 18 6 8.1408 -4.9686 0.0064 19 7 9.3758 -4.8897 -0.5815 20 7 7.1979 -4.2678 -0.4912 21 1 -0.4850 0.8401 0.0004 22 1 3.8745 -0.6808 0.8905 23 1 3.8752 -0.6797 -0.8894 24 1 3.3695 -3.3125 -0.0001 25 1 4.7168 -4.9526 1.7083 26 1 6.2310 -4.1047 2.1153 27 1 6.3779 -6.6109 2.4306 28 1 6.1062 -6.8006 0.6786 29 1 8.4263 -5.3985 2.0709 30 1 8.4969 -6.8162 0.9983 31 1 10.1150 -5.4092 -0.2286 32 1 9.5107 -4.3149 -1.3511 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003599607.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:44:48 Heat of formation + Delta-G solvation = -27.373482 kcal Electronic energy + Delta-G solvation = -15274.570928 eV Core-core repulsion = 12655.585853 eV Total energy + Delta-G solvation = -2618.985075 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.68558 -37.99902 -34.55084 -34.16195 -32.27986 -31.77990 -29.57400 -27.72156 -24.82916 -22.40322 -21.97516 -19.94228 -18.61882 -17.47816 -16.76573 -16.19854 -15.58934 -15.24916 -14.83296 -14.38892 -14.09090 -13.72843 -13.28523 -13.09257 -12.86416 -12.35350 -12.09337 -11.79692 -11.42805 -11.03007 -10.97245 -10.92287 -10.70079 -9.92447 -9.44360 -9.23881 -8.72661 -8.62118 -8.11861 -8.02129 -6.17263 -4.18812 2.69067 3.29433 3.33608 3.37089 3.46614 3.65364 4.12544 4.38020 4.49271 4.71514 4.80329 4.91951 5.17978 5.19310 5.41038 5.45760 5.61451 5.68727 5.77960 5.80714 6.01978 6.16905 6.89454 7.14909 7.31098 7.35097 7.47279 7.56968 8.21820 8.58999 8.66392 8.81535 9.09710 9.43938 10.94749 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.051974 B = 0.005791 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.597081 B = 4834.105907 C = 5182.891160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.541 4.541 8 H 0.080 0.920 9 C 0.222 3.778 10 N -0.708 5.708 11 C 0.511 3.489 12 O -0.542 6.542 13 C 0.099 3.901 14 H 0.094 0.906 15 C -0.147 4.147 16 C -0.114 4.114 17 C -0.127 4.127 18 C 0.413 3.587 19 N -0.855 5.855 20 N -0.600 5.600 21 H 0.267 0.733 22 H 0.023 0.977 23 H 0.020 0.980 24 H 0.395 0.605 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.399 0.601 32 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.229 -14.135 2.655 20.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.579 4.579 8 H 0.098 0.902 9 C 0.099 3.901 10 N -0.358 5.358 11 C 0.295 3.705 12 O -0.419 6.419 13 C -0.016 4.016 14 H 0.112 0.888 15 C -0.186 4.186 16 C -0.152 4.152 17 C -0.169 4.169 18 C 0.130 3.870 19 N -0.405 5.405 20 N -0.325 5.325 21 H 0.077 0.923 22 H 0.041 0.959 23 H 0.038 0.962 24 H 0.228 0.772 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.227 0.773 32 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 15.266 -12.751 2.098 20.001 hybrid contribution 0.165 0.098 0.477 0.514 sum 15.432 -12.653 2.575 20.122 Atomic orbital electron populations 1.69885 1.06193 1.27351 1.49709 1.24788 0.94776 0.99142 0.93909 0.86820 0.80569 0.83253 0.79081 1.19833 1.20937 1.18541 1.21109 0.88563 0.95196 1.53028 0.90243 1.19456 0.95108 0.78831 0.96657 1.46139 1.05540 1.10820 1.73284 1.20261 0.82878 0.90241 0.77146 1.90619 1.55617 1.46029 1.49684 1.21027 0.90291 0.94971 0.95311 0.88819 1.22125 1.02327 0.97149 0.97027 1.21573 0.93598 0.97311 1.02688 1.21208 0.98634 0.99625 0.97390 1.20461 0.87029 0.90300 0.89200 1.42084 1.08468 1.52800 1.37099 1.69138 1.01047 1.26910 1.35357 0.92323 0.95908 0.96240 0.77217 0.89931 0.90903 0.90436 0.91185 0.89527 0.89864 0.77316 0.76947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.97 13.96 55.43 0.77 -26.20 16 2 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 3 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 4 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 7 C -0.54 -15.24 9.83 -34.44 -0.34 -15.58 16 8 H 0.08 2.31 7.84 -52.49 -0.41 1.90 16 9 C 0.22 5.73 4.50 -5.19 -0.02 5.70 16 10 N -0.71 -15.30 5.55 -61.47 -0.34 -15.64 16 11 C 0.51 10.85 7.03 -10.99 -0.08 10.77 16 12 O -0.54 -13.85 16.55 5.55 0.09 -13.76 16 13 C 0.10 1.60 3.47 -69.55 -0.24 1.36 16 14 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 15 C -0.15 -1.89 5.32 -26.51 -0.14 -2.03 16 16 C -0.11 -1.06 6.07 -26.43 -0.16 -1.22 16 17 C -0.13 -1.13 5.93 -28.11 -0.17 -1.29 16 18 C 0.41 5.12 7.68 -156.24 -1.20 3.92 16 19 N -0.86 -7.99 8.97 32.41 0.29 -7.70 16 20 N -0.60 -9.92 9.64 -53.94 -0.52 -10.44 16 21 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 22 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 23 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 24 H 0.39 7.42 8.32 -40.82 -0.34 7.08 16 25 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.40 2.28 8.78 -40.82 -0.36 1.92 16 32 H 0.40 3.96 8.89 -40.82 -0.36 3.60 16 LS Contribution 272.07 15.07 4.10 4.10 Total: -1.00 -35.58 272.07 -7.08 -42.66 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -4.36 Total: 5.81 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -2.45 Total: 3.77 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: 0.20 Total: -59.98 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.09 Total: -13.76 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -35.58 -7.08 -42.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003599607.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.286 kcal (2) G-P(sol) polarization free energy of solvation -35.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds