Wall clock time and date at job start Mon Mar 30 2020 20:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99756 * 2 1 4 4 H 1.48500 * 109.46719 * 269.99656 * 3 2 1 5 5 H 1.48497 * 109.47390 * 29.99597 * 3 2 1 6 6 H 1.48498 * 109.47432 * 149.99709 * 3 2 1 7 7 C 1.37873 * 120.00511 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99661 * 359.97438 * 7 2 1 9 9 C 1.50692 * 120.00463 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47331 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47215 * 180.02562 * 10 9 7 12 12 N 1.46896 * 109.47085 * 180.02562 * 11 10 9 13 13 C 1.47961 * 111.00024 * 189.99677 * 12 11 10 14 14 C 1.53932 * 86.18529 * 222.41407 * 13 12 11 15 15 O 1.42896 * 113.73430 * 269.26022 * 14 13 12 16 16 C 1.52996 * 113.73635 * 138.07532 * 14 13 12 17 17 C 1.53002 * 117.49888 * 113.15682 * 16 14 13 18 18 C 1.53000 * 117.50107 * 181.81444 * 16 14 13 19 19 C 1.48188 * 111.07513 * 90.56494 * 12 11 10 20 20 H 0.97005 * 120.00246 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.47425 * 59.99962 * 9 7 2 22 22 H 1.09001 * 109.47337 * 300.00288 * 9 7 2 23 23 H 1.09001 * 109.47229 * 60.00015 * 10 9 7 24 24 H 1.08999 * 109.47538 * 299.99759 * 10 9 7 25 25 H 1.08997 * 109.47613 * 59.99794 * 11 10 9 26 26 H 1.09005 * 109.46824 * 299.99870 * 11 10 9 27 27 H 1.09004 * 113.75757 * 108.09701 * 13 12 11 28 28 H 1.08996 * 113.85816 * 336.74573 * 13 12 11 29 29 H 0.96701 * 114.00561 * 48.42845 * 15 14 13 30 30 H 1.09002 * 115.54951 * 327.48656 * 16 14 13 31 31 H 1.09000 * 117.49996 * 215.00804 * 17 16 14 32 32 H 1.08999 * 117.49664 * 0.02562 * 17 16 14 33 33 H 1.09008 * 117.49673 * 359.97438 * 18 16 14 34 34 H 1.08999 * 117.49942 * 144.97366 * 18 16 14 35 35 H 1.08998 * 113.75910 * 23.23282 * 19 12 11 36 36 H 1.09005 * 113.82477 * 251.80940 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5516 -2.6363 0.0022 12 7 6.0413 -4.0213 0.0015 13 6 7.5004 -4.0679 0.2424 14 6 7.5454 -5.1353 -0.8658 15 8 7.4012 -6.4724 -0.3827 16 6 8.7225 -4.9732 -1.8296 17 6 9.8020 -6.0574 -1.8150 18 6 8.8265 -5.9639 -2.9909 19 6 6.2329 -4.5180 -1.3815 20 1 -0.4851 0.8401 -0.0004 21 1 3.8745 -0.6799 0.8911 22 1 3.8752 -0.6803 -0.8888 23 1 3.6586 -3.1500 -0.8893 24 1 3.6580 -3.1505 0.8907 25 1 5.9143 -2.1228 0.8926 26 1 5.9156 -2.1221 -0.8873 27 1 7.7709 -4.4466 1.2281 28 1 8.0196 -3.1449 -0.0156 29 1 6.6612 -6.5923 0.2282 30 1 9.0420 -3.9473 -2.0131 31 1 10.8317 -5.7448 -1.9889 32 1 9.6733 -6.8863 -1.1191 33 1 8.0564 -6.7315 -3.0680 34 1 9.2139 -5.5897 -3.9385 35 1 6.3789 -3.7262 -2.1162 36 1 5.4924 -5.2557 -1.6909 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084377263.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:45:56 Heat of formation + Delta-G solvation = 1.008450 kcal Electronic energy + Delta-G solvation = -15385.205145 eV Core-core repulsion = 12870.991146 eV Total energy + Delta-G solvation = -2514.213999 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.61283 -36.92787 -35.30809 -33.91240 -31.89422 -28.82925 -26.30279 -25.78558 -23.00117 -22.43392 -20.78325 -20.12837 -19.90019 -17.01368 -16.54019 -15.98108 -15.49160 -15.00141 -14.73679 -14.19288 -13.70286 -13.50693 -13.23866 -12.71671 -12.42483 -12.16847 -11.78020 -11.60108 -11.39221 -11.05990 -10.96831 -10.79831 -10.65340 -10.34007 -9.91273 -9.69938 -9.63937 -9.51650 -9.17539 -8.72380 -8.53008 -6.03182 -4.00967 3.30163 3.37555 3.41141 3.50926 3.89612 3.98954 4.33592 4.45594 4.49113 4.79031 5.01137 5.06790 5.19312 5.22860 5.30725 5.41966 5.51740 5.58176 5.63475 5.72345 5.76771 5.94779 6.02140 6.07589 6.12163 6.28892 6.53255 6.65215 6.93674 7.11202 7.35138 7.45393 7.54764 7.81011 8.56237 9.02434 9.59356 11.10440 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.056259 B = 0.004658 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.580742 B = 6010.199367 C = 6135.335594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.092 4.092 11 C 0.021 3.979 12 N -0.481 5.481 13 C -0.026 4.026 14 C 0.143 3.857 15 O -0.540 6.540 16 C -0.144 4.144 17 C -0.166 4.166 18 C -0.169 4.169 19 C -0.020 4.020 20 H 0.263 0.737 21 H 0.015 0.985 22 H 0.008 0.992 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.039 0.961 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.389 0.611 30 H 0.115 0.885 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.022 -9.666 -3.095 21.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.090 0.910 9 C -0.052 4.052 10 C -0.130 4.130 11 C -0.107 4.107 12 N -0.204 5.204 13 C -0.155 4.155 14 C 0.100 3.900 15 O -0.346 6.346 16 C -0.163 4.163 17 C -0.203 4.203 18 C -0.206 4.206 19 C -0.150 4.150 20 H 0.072 0.928 21 H 0.033 0.967 22 H 0.026 0.974 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.058 0.942 27 H 0.110 0.890 28 H 0.093 0.907 29 H 0.238 0.762 30 H 0.133 0.867 31 H 0.108 0.892 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 18.914 -9.963 -3.009 21.588 hybrid contribution 0.231 1.763 -0.170 1.787 sum 19.145 -8.199 -3.180 21.068 Atomic orbital electron populations 1.69919 1.06293 1.26832 1.51323 1.25042 0.94733 0.99155 0.94641 0.86767 0.80339 0.83662 0.78429 1.20358 1.21366 1.19101 1.21146 0.89505 0.94473 1.50542 0.91029 1.19562 0.97232 0.92370 0.95999 1.21348 0.90626 0.99397 1.01618 1.22831 0.99033 0.88235 1.00576 1.68525 1.12763 1.21507 1.17585 1.24715 0.91063 0.99100 1.00651 1.21942 0.92973 0.82672 0.92376 1.86317 1.55517 1.26362 1.66448 1.22170 0.97804 0.96303 0.99992 1.22872 0.94479 1.01275 1.01702 1.22896 1.02883 1.02110 0.92751 1.24803 0.97371 1.00388 0.92390 0.92766 0.96719 0.97359 0.92972 0.92105 0.91349 0.94225 0.89030 0.90705 0.76186 0.86712 0.89199 0.87891 0.88400 0.88952 0.90343 0.88901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.33 13.96 55.43 0.77 -27.55 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 7 C -0.52 -15.13 9.66 -34.45 -0.33 -15.46 16 8 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 9 C -0.01 -0.33 4.04 -27.89 -0.11 -0.45 16 10 C -0.09 -1.88 5.46 -26.73 -0.15 -2.02 16 11 C 0.02 0.35 4.80 -3.82 -0.02 0.33 16 12 N -0.48 -6.80 6.04 -237.95 -1.44 -8.24 16 13 C -0.03 -0.30 7.30 -2.76 -0.02 -0.32 16 14 C 0.14 1.59 1.68 -89.69 -0.15 1.44 16 15 O -0.54 -6.10 12.24 -35.23 -0.43 -6.53 16 16 C -0.14 -1.43 5.43 -90.62 -0.49 -1.92 16 17 C -0.17 -1.54 9.96 -26.69 -0.27 -1.80 16 18 C -0.17 -1.57 10.13 -26.70 -0.27 -1.84 16 19 C -0.02 -0.26 7.33 -2.63 -0.02 -0.28 16 20 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 21 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 22 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 23 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 25 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 26 H 0.04 0.63 7.39 -51.93 -0.38 0.24 16 27 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.07 0.82 7.87 -51.93 -0.41 0.41 16 29 H 0.39 3.74 8.89 45.56 0.41 4.14 16 30 H 0.11 1.04 8.13 -51.93 -0.42 0.62 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.10 1.05 7.41 -51.93 -0.38 0.66 16 33 H 0.10 0.98 8.14 -51.92 -0.42 0.56 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.98 7.44 -51.93 -0.39 0.60 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 295.01 15.07 4.45 4.45 Total: -1.00 -31.24 295.01 -8.56 -39.80 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.31 Total: 1.25 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -1.93 Total: -20.49 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: -0.66 Total: -35.79 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -0.43 Total: -6.53 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.24 -8.56 -39.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084377263.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.808 kcal (2) G-P(sol) polarization free energy of solvation -31.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds