Wall clock time and date at job start Mon Mar 30 2020 20:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00277 * 2 1 4 4 H 1.48498 * 109.46784 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47465 * 120.00127 * 3 2 1 6 6 H 1.48506 * 109.46751 * 240.00292 * 3 2 1 7 7 C 1.37880 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99889 * 187.11593 * 7 2 1 9 9 C 1.50696 * 120.00072 * 7.11558 * 7 2 1 10 10 C 1.53002 * 115.55087 * 275.21783 * 9 7 2 11 11 O 1.42906 * 109.46948 * 301.48880 * 10 9 7 12 12 C 1.42896 * 113.99888 * 184.82325 * 11 10 9 13 13 C 1.53784 * 113.61084 * 247.49514 * 12 11 10 14 14 C 1.53780 * 87.08152 * 270.88469 * 13 12 11 15 15 C 1.52999 * 113.61276 * 220.01777 * 14 13 12 16 16 N 1.46896 * 109.47574 * 272.50105 * 15 14 13 17 17 C 1.53775 * 87.08157 * 334.57018 * 14 13 12 18 18 C 1.52998 * 117.49845 * 129.54386 * 9 7 2 19 19 C 1.53000 * 117.49868 * 60.88111 * 9 7 2 20 20 H 0.97000 * 120.00137 * 175.39511 * 1 2 3 21 21 H 1.08993 * 109.47139 * 61.48906 * 10 9 7 22 22 H 1.08996 * 109.46897 * 181.49234 * 10 9 7 23 23 H 1.08993 * 112.85039 * 18.80298 * 12 11 10 24 24 H 1.08993 * 113.61760 * 25.43992 * 13 12 11 25 25 H 1.09003 * 113.61046 * 156.33977 * 13 12 11 26 26 H 1.09005 * 113.61444 * 89.12215 * 14 13 12 27 27 H 1.08999 * 109.46956 * 32.50520 * 15 14 13 28 28 H 1.09006 * 109.46948 * 152.49850 * 15 14 13 29 29 H 1.00900 * 111.00360 * 180.02562 * 16 15 14 30 30 H 1.00903 * 111.00077 * 303.95485 * 16 15 14 31 31 H 1.08999 * 113.61560 * 270.88164 * 17 14 13 32 32 H 1.08998 * 113.61262 * 139.98183 * 17 14 13 33 33 H 1.08994 * 117.50179 * 0.02562 * 18 9 7 34 34 H 1.09001 * 117.49995 * 145.02349 * 18 9 7 35 35 H 1.08991 * 117.50275 * 214.97949 * 19 9 7 36 36 H 1.09000 * 117.49883 * 359.97438 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1030 1.6964 1.2124 6 1 3.1029 1.6963 -1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0783 -1.1976 0.1164 9 6 1.2597 -2.4942 -0.1605 10 6 0.6778 -3.0851 1.1252 11 8 1.7301 -3.3066 2.0664 12 6 1.3091 -3.9595 3.2658 13 6 1.3898 -3.0655 4.5145 14 6 2.8333 -3.5679 4.6845 15 6 3.2189 -3.8438 6.1392 16 7 3.7260 -2.6098 6.7539 17 6 2.4030 -4.8259 3.9120 18 6 1.7683 -3.4730 -1.2208 19 6 0.4680 -2.6993 -1.4536 20 1 -0.4850 -0.8373 -0.0674 21 1 -0.0478 -2.3905 1.5483 22 1 0.1864 -4.0316 0.9002 23 1 0.3539 -4.4726 3.1555 24 1 1.3212 -2.0003 4.2942 25 1 0.7219 -3.3764 5.3179 26 1 3.5711 -2.9628 4.1575 27 1 2.3429 -4.1897 6.6879 28 1 3.9933 -4.6103 6.1706 29 1 3.9880 -2.7661 7.7157 30 1 4.4989 -2.2337 6.2254 31 1 2.0121 -5.6181 4.5505 32 1 3.1524 -5.1819 3.2051 33 1 2.6417 -3.1768 -1.8016 34 1 1.6879 -4.5379 -1.0026 35 1 -0.4670 -3.2555 -1.3885 36 1 0.4856 -1.8937 -2.1876 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084450045.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:46:01 Heat of formation + Delta-G solvation = -9.665670 kcal Electronic energy + Delta-G solvation = -15846.795198 eV Core-core repulsion = 13332.118335 eV Total energy + Delta-G solvation = -2514.676863 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.21389 -37.10646 -35.18102 -33.23520 -31.78532 -26.77758 -25.70405 -25.28575 -24.59008 -21.82942 -21.24751 -19.39986 -19.11879 -16.70843 -16.00182 -15.68596 -14.81475 -14.59279 -14.49296 -14.15613 -13.66424 -13.40795 -12.88003 -12.43902 -12.16556 -12.04047 -11.66674 -11.31745 -10.81004 -10.72263 -10.46814 -10.42406 -10.14738 -10.04643 -9.79839 -9.53284 -8.81853 -8.64241 -8.38467 -8.34623 -8.22416 -6.26810 -3.97308 3.49240 3.51224 3.69564 4.21105 4.46339 4.59235 4.96066 4.99174 5.13259 5.17907 5.31291 5.42113 5.57660 5.64231 5.69137 5.81844 5.93536 5.98178 6.11417 6.17287 6.25195 6.42273 6.50836 6.58530 6.61584 6.64520 6.74237 6.88634 7.11704 7.27722 7.29633 7.40340 8.13172 8.37646 8.53361 8.96737 9.74959 11.12734 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.023775 B = 0.008102 C = 0.006591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.412719 B = 3454.918992 C = 4246.972204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.025 3.975 3 Si 1.066 2.934 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.289 1.289 7 C -0.556 4.556 8 H 0.053 0.947 9 C 0.022 3.978 10 C 0.106 3.894 11 O -0.342 6.342 12 C 0.061 3.939 13 C -0.146 4.146 14 C -0.099 4.099 15 C 0.072 3.928 16 N -0.850 5.850 17 C -0.138 4.138 18 C -0.192 4.192 19 C -0.176 4.176 20 H 0.271 0.729 21 H 0.045 0.955 22 H 0.016 0.984 23 H 0.060 0.940 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.022 0.978 29 H 0.335 0.665 30 H 0.342 0.658 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.807 -8.372 8.924 12.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.180 4.180 3 Si 0.895 3.105 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.594 4.594 8 H 0.071 0.929 9 C 0.022 3.978 10 C 0.029 3.971 11 O -0.260 6.260 12 C 0.002 3.998 13 C -0.184 4.184 14 C -0.118 4.118 15 C -0.058 4.058 16 N -0.379 5.379 17 C -0.176 4.176 18 C -0.229 4.229 19 C -0.213 4.213 20 H 0.083 0.917 21 H 0.063 0.937 22 H 0.034 0.966 23 H 0.078 0.922 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.113 0.887 27 H 0.087 0.913 28 H 0.040 0.960 29 H 0.147 0.853 30 H 0.154 0.846 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.059 -6.365 8.797 11.281 hybrid contribution 0.772 -2.378 0.108 2.503 sum 3.831 -8.743 8.905 13.054 Atomic orbital electron populations 1.70753 1.06755 1.31217 1.45836 1.25759 0.96552 1.02217 0.93469 0.83584 0.74953 0.75434 0.76547 1.20879 1.21380 1.21550 1.21181 0.94364 0.89435 1.54431 0.92900 1.19030 0.98473 0.95550 0.84796 1.22259 0.88956 0.95621 0.90262 1.87997 1.34098 1.78000 1.25930 1.22910 0.96255 0.93918 0.86705 1.23399 0.95984 1.01620 0.97352 1.22427 0.98046 0.97543 0.93772 1.21826 0.98678 0.90220 0.95123 1.58665 1.42193 1.30762 1.06273 1.23216 0.99233 0.96391 0.98798 1.22863 0.97556 0.95580 1.06927 1.22771 0.93268 1.02312 1.02972 0.91749 0.93682 0.96572 0.92202 0.90458 0.90326 0.88740 0.91314 0.95959 0.85278 0.84571 0.89834 0.90882 0.90113 0.91521 0.91570 0.89504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.32 13.57 55.43 0.75 -26.57 16 2 C 0.02 0.71 5.39 -17.82 -0.10 0.61 16 3 Si 1.07 25.73 29.91 -169.99 -5.08 20.64 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.56 -16.00 8.64 -34.44 -0.30 -16.30 16 8 H 0.05 1.56 7.82 -52.48 -0.41 1.15 16 9 C 0.02 0.56 1.20 -155.66 -0.19 0.38 16 10 C 0.11 2.49 5.58 37.16 0.21 2.69 16 11 O -0.34 -7.76 10.08 -35.23 -0.36 -8.12 16 12 C 0.06 1.08 4.37 -25.92 -0.11 0.97 16 13 C -0.15 -2.40 7.46 -25.92 -0.19 -2.60 16 14 C -0.10 -1.47 3.84 -89.81 -0.34 -1.81 16 15 C 0.07 0.86 6.62 -3.83 -0.03 0.83 16 16 N -0.85 -9.80 9.62 -10.37 -0.10 -9.90 16 17 C -0.14 -1.99 7.47 -25.92 -0.19 -2.18 16 18 C -0.19 -4.36 9.94 -26.69 -0.27 -4.63 16 19 C -0.18 -4.13 8.75 -26.69 -0.23 -4.37 16 20 H 0.27 8.04 6.15 -40.82 -0.25 7.79 16 21 H 0.04 1.13 7.76 -51.93 -0.40 0.73 16 22 H 0.02 0.34 8.05 -51.93 -0.42 -0.08 16 23 H 0.06 0.98 7.83 -51.93 -0.41 0.57 16 24 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 25 H 0.08 1.12 7.90 -51.93 -0.41 0.71 16 26 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 27 H 0.07 0.78 7.84 -51.93 -0.41 0.37 16 28 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.34 3.04 9.08 -39.29 -0.36 2.68 16 30 H 0.34 3.77 8.99 -39.29 -0.35 3.42 16 31 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.08 1.83 8.14 -51.93 -0.42 1.40 16 34 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 LS Contribution 298.43 15.07 4.50 4.50 Total: -1.00 -31.08 298.43 -8.05 -39.13 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -6.01 Total: 6.71 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: -1.74 Total: -26.40 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.65 Total: -36.47 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -0.36 Total: -8.12 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.08 Total: 20.64 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.08 -8.05 -39.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084450045.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.463 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds