Wall clock time and date at job start Mon Mar 30 2020 20:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99703 * 2 1 4 4 H 1.48504 * 109.46677 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47284 * 300.00003 * 3 2 1 6 6 H 1.48501 * 109.47211 * 60.00388 * 3 2 1 7 7 C 1.37873 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99582 * 185.96647 * 7 2 1 9 9 C 1.50700 * 120.00507 * 5.95990 * 7 2 1 10 10 C 1.53000 * 109.59000 * 56.57382 * 9 7 2 11 11 N 1.46900 * 109.46985 * 52.60867 * 10 9 7 12 12 C 1.53349 * 109.59038 * 296.28206 * 9 7 2 13 13 C 1.53077 * 109.07943 * 294.92233 * 12 9 7 14 14 O 1.42872 * 109.69320 * 300.58677 * 13 12 9 15 15 C 1.43081 * 114.05622 * 62.89810 * 14 13 12 16 16 C 1.52757 * 109.13878 * 301.22737 * 15 14 13 17 17 C 1.53360 * 113.60157 * 282.71839 * 16 15 14 18 18 C 1.53862 * 86.95089 * 270.40735 * 17 16 15 19 19 C 1.53329 * 113.64826 * 184.67879 * 16 15 14 20 20 H 0.96996 * 119.99995 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47601 * 172.61243 * 10 9 7 22 22 H 1.09008 * 109.47349 * 292.61462 * 10 9 7 23 23 H 1.00900 * 111.00187 * 179.97438 * 11 10 9 24 24 H 1.00900 * 111.00514 * 303.95498 * 11 10 9 25 25 H 1.09004 * 109.53924 * 175.04129 * 12 9 7 26 26 H 1.09002 * 109.54176 * 54.80132 * 12 9 7 27 27 H 1.09006 * 109.43369 * 180.52336 * 13 12 9 28 28 H 1.08997 * 109.39894 * 60.63492 * 13 12 9 29 29 H 1.09001 * 109.52837 * 61.11931 * 15 14 13 30 30 H 1.08992 * 109.53268 * 181.32813 * 15 14 13 31 31 H 1.08999 * 113.63561 * 24.92076 * 17 16 15 32 32 H 1.08991 * 113.63917 * 155.89441 * 17 16 15 33 33 H 1.08997 * 113.60478 * 220.32213 * 18 17 16 34 34 H 1.08997 * 113.60309 * 89.45327 * 18 17 16 35 35 H 1.08997 * 113.63351 * 204.06099 * 19 16 15 36 36 H 1.08994 * 113.63158 * 335.03163 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0802 -1.1965 0.0967 9 6 1.2572 -2.4956 -0.1366 10 6 0.4252 -2.4776 -1.4205 11 7 1.2866 -2.1260 -2.5573 12 6 0.3333 -2.6868 1.0722 13 6 1.1857 -2.8375 2.3347 14 8 2.0529 -3.9647 2.1983 15 6 2.9996 -3.8466 1.1320 16 6 2.2494 -3.6573 -0.1851 17 6 1.6477 -4.9538 -0.7408 18 6 2.9813 -5.1589 -1.4803 19 6 3.1638 -3.6325 -1.4157 20 1 -0.4850 0.8400 0.0004 21 1 -0.0098 -3.4633 -1.5855 22 1 -0.3718 -1.7398 -1.3267 23 1 0.7601 -2.1078 -3.4179 24 1 1.7523 -1.2449 -2.3993 25 1 -0.2709 -3.5831 0.9312 26 1 -0.3184 -1.8189 1.1739 27 1 0.5346 -2.9831 3.1967 28 1 1.7819 -1.9365 2.4787 29 1 3.6444 -2.9861 1.3109 30 1 3.6045 -4.7517 1.0798 31 1 1.4510 -5.7066 0.0225 32 1 0.7997 -4.7920 -1.4061 33 1 2.8639 -5.5419 -2.4940 34 1 3.7209 -5.7117 -0.9012 35 1 2.7355 -3.1048 -2.2678 36 1 4.1854 -3.3235 -1.1947 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260906708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:45:33 Heat of formation + Delta-G solvation = -17.739750 kcal Electronic energy + Delta-G solvation = -17522.346119 eV Core-core repulsion = 15007.319137 eV Total energy + Delta-G solvation = -2515.026981 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.88268 -36.14540 -34.72225 -31.80828 -30.53298 -28.18631 -25.49189 -25.32699 -23.83592 -22.64183 -20.95173 -19.48072 -17.35525 -15.97607 -15.42664 -14.96516 -14.74969 -14.36053 -14.07347 -13.93592 -13.02926 -12.91974 -12.46346 -11.74143 -11.58722 -11.49794 -11.12955 -10.99176 -10.84784 -10.61698 -10.41586 -10.29726 -9.96820 -9.68276 -9.44682 -9.23654 -8.81287 -8.53717 -8.35945 -8.11931 -7.13416 -6.02430 -4.10919 3.21103 3.31940 3.36339 4.34876 4.86235 5.18610 5.64539 5.67116 5.71211 5.84978 6.01531 6.19886 6.25730 6.36085 6.41983 6.48254 6.53955 6.59123 6.68684 6.81283 6.88180 7.00059 7.08351 7.15467 7.27006 7.35621 7.50741 7.66305 7.74695 7.91045 7.99402 8.23466 8.38781 8.50023 8.59095 8.91964 9.51471 10.94987 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.027459 B = 0.013718 C = 0.011798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.472920 B = 2040.650713 C = 2372.739760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.061 3.939 3 Si 0.882 3.118 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.287 1.287 7 C -0.486 4.486 8 H 0.056 0.944 9 C 0.093 3.907 10 C 0.070 3.930 11 N -0.831 5.831 12 C -0.139 4.139 13 C 0.073 3.927 14 O -0.401 6.401 15 C 0.094 3.906 16 C -0.089 4.089 17 C -0.131 4.131 18 C -0.148 4.148 19 C -0.148 4.148 20 H 0.258 0.742 21 H 0.034 0.966 22 H 0.055 0.945 23 H 0.308 0.692 24 H 0.349 0.651 25 H 0.024 0.976 26 H 0.098 0.902 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.155 0.845 36 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.818 -4.302 -1.712 4.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.140 4.140 3 Si 0.710 3.290 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.525 4.525 8 H 0.074 0.926 9 C 0.092 3.908 10 C -0.060 4.060 11 N -0.360 5.360 12 C -0.178 4.178 13 C -0.003 4.003 14 O -0.320 6.320 15 C 0.017 3.983 16 C -0.089 4.089 17 C -0.168 4.168 18 C -0.186 4.186 19 C -0.185 4.185 20 H 0.068 0.932 21 H 0.052 0.948 22 H 0.073 0.927 23 H 0.118 0.882 24 H 0.164 0.836 25 H 0.043 0.957 26 H 0.116 0.884 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.171 0.829 36 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.046 -4.978 -1.397 5.560 hybrid contribution -0.133 1.963 -0.109 1.971 sum 1.913 -3.015 -1.506 3.875 Atomic orbital electron populations 1.69845 1.05646 1.26004 1.51210 1.24940 0.94763 0.98695 0.95581 0.86686 0.80451 0.84324 0.77520 1.19767 1.21208 1.21308 1.21079 0.93288 0.89870 1.48224 0.92591 1.17939 0.90917 0.91646 0.90288 1.21863 0.95565 0.97396 0.91143 1.58868 1.33311 1.39396 1.04378 1.22174 0.99074 1.00549 0.95975 1.22426 0.92027 0.88292 0.97531 1.87738 1.49055 1.43041 1.52178 1.22168 0.90340 0.99537 0.86235 1.21955 0.97672 0.95478 0.93830 1.22933 0.96897 0.97860 0.99090 1.22868 0.97887 0.99014 0.98830 1.23912 0.97915 0.94122 1.02572 0.93194 0.94796 0.92712 0.88230 0.83585 0.95686 0.88381 0.91841 0.92853 0.93520 0.91384 0.93442 0.90048 0.93174 0.92546 0.82897 0.94825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.52 9.49 55.43 0.53 -22.00 16 2 C 0.06 1.49 4.89 -17.82 -0.09 1.41 16 3 Si 0.88 19.85 29.54 -169.99 -5.02 14.83 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.49 -11.77 4.83 -34.44 -0.17 -11.94 16 8 H 0.06 1.42 7.24 -52.48 -0.38 1.04 16 9 C 0.09 2.07 0.09 -155.56 -0.01 2.06 16 10 C 0.07 1.52 5.01 -3.82 -0.02 1.50 16 11 N -0.83 -16.06 5.96 -10.37 -0.06 -16.12 16 12 C -0.14 -3.18 4.72 -26.51 -0.13 -3.30 16 13 C 0.07 1.60 6.59 37.20 0.24 1.84 16 14 O -0.40 -8.72 10.78 -35.23 -0.38 -9.10 16 15 C 0.09 1.93 5.67 37.03 0.21 2.14 16 16 C -0.09 -1.83 0.33 -154.36 -0.05 -1.88 16 17 C -0.13 -2.50 6.86 -26.10 -0.18 -2.68 16 18 C -0.15 -2.60 7.73 -25.83 -0.20 -2.80 16 19 C -0.15 -2.87 6.57 -26.11 -0.17 -3.04 16 20 H 0.26 6.43 8.31 -40.82 -0.34 6.09 16 21 H 0.03 0.71 5.56 -51.93 -0.29 0.43 16 22 H 0.05 1.32 6.29 -51.92 -0.33 1.00 16 23 H 0.31 5.25 9.08 -39.29 -0.36 4.89 16 24 H 0.35 7.29 7.44 -39.29 -0.29 7.00 16 25 H 0.02 0.55 8.12 -51.93 -0.42 0.13 16 26 H 0.10 2.45 6.07 -51.93 -0.32 2.13 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16 29 H 0.05 1.00 7.47 -51.93 -0.39 0.61 16 30 H 0.07 1.28 7.34 -51.93 -0.38 0.90 16 31 H 0.05 0.91 8.09 -51.93 -0.42 0.49 16 32 H 0.08 1.58 5.40 -51.93 -0.28 1.30 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.93 7.64 -51.93 -0.40 0.54 16 35 H 0.15 3.06 4.30 -54.81 -0.24 2.82 16 36 H 0.03 0.65 8.09 -51.93 -0.42 0.23 16 LS Contribution 260.49 15.07 3.93 3.93 Total: -1.00 -24.75 260.49 -6.84 -31.58 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -5.27 Total: 13.58 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: -0.56 Total: -16.71 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.46 Total: -38.12 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.38 Total: -9.10 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -24.75 -6.84 -31.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260906708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.845 kcal (2) G-P(sol) polarization free energy of solvation -24.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds