Wall clock time and date at job start Mon Mar 30 2020 20:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46505 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.44876 * 112.61172 * 89.99998 * 11 10 9 13 13 C 1.53185 * 111.78599 * 180.20356 * 12 11 10 14 14 C 1.53057 * 109.09921 * 279.36605 * 13 12 11 15 15 C 1.51485 * 111.50788 * 58.25683 * 14 13 12 16 16 C 1.52457 * 107.05185 * 66.74577 * 15 14 13 17 17 C 1.53075 * 110.86562 * 282.13244 * 16 15 14 18 18 C 1.32029 * 112.61470 * 269.76705 * 11 10 9 19 19 O 1.21280 * 118.29226 * 351.58847 * 18 11 10 20 20 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 22 22 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 23 23 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 24 24 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 25 25 H 1.08994 * 109.01788 * 300.79642 * 12 11 10 26 26 H 1.08996 * 109.01566 * 59.61155 * 12 11 10 27 27 H 1.08998 * 109.53369 * 39.24732 * 13 12 11 28 28 H 1.08996 * 109.53304 * 159.48137 * 13 12 11 29 29 H 1.09000 * 109.07174 * 178.77753 * 14 13 12 30 30 H 1.09002 * 109.06909 * 297.79757 * 14 13 12 31 31 H 1.09007 * 109.93643 * 186.13230 * 15 14 13 32 32 H 1.09001 * 109.93382 * 307.27561 * 15 14 13 33 33 H 1.09003 * 109.20383 * 42.48760 * 16 15 14 34 34 H 1.09003 * 109.20214 * 161.77894 * 16 15 14 35 35 H 1.08991 * 109.61975 * 83.92931 * 17 16 15 36 36 H 1.08994 * 109.62189 * 204.30079 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 1.2336 -5.4136 -1.3360 13 6 0.4633 -6.7375 -1.3133 14 6 1.4465 -7.8848 -1.0688 15 6 2.2017 -7.7015 0.2315 16 6 1.1863 -7.8353 1.3609 17 6 0.3637 -6.5529 1.5093 18 6 1.2634 -5.3727 1.2201 19 8 1.7794 -4.7993 2.1560 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5566 0.8902 23 1 2.8718 -3.6044 0.8905 24 1 2.8718 -3.6044 -0.8895 25 1 0.6421 -4.6677 -1.8667 26 1 2.1755 -5.5598 -1.8645 27 1 -0.2766 -6.7150 -0.5132 28 1 -0.0373 -6.8844 -2.2703 29 1 0.8951 -8.8244 -1.0310 30 1 2.1601 -7.9237 -1.8917 31 1 2.9682 -8.4705 0.3278 32 1 2.6612 -6.7134 0.2582 33 1 0.5167 -8.6676 1.1443 34 1 1.7127 -8.0334 2.2946 35 1 -0.4651 -6.5658 0.8016 36 1 -0.0237 -6.4821 2.5256 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019427084.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:47:47 Heat of formation + Delta-G solvation = -34.695951 kcal Electronic energy + Delta-G solvation = -16320.173668 eV Core-core repulsion = 13804.411411 eV Total energy + Delta-G solvation = -2515.762258 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.52037 -36.81345 -35.33496 -32.94750 -31.58581 -29.99225 -28.21807 -25.74540 -24.52580 -22.04017 -21.41532 -20.13076 -18.38582 -16.73698 -16.14253 -15.99908 -15.59762 -14.77465 -14.36712 -13.90991 -13.58994 -13.21301 -12.82454 -12.41289 -12.33407 -12.17495 -11.90195 -11.43747 -11.23348 -11.16463 -10.89308 -10.82862 -10.61948 -10.55788 -9.91781 -9.81033 -9.73624 -9.25792 -8.89706 -8.30874 -7.92052 -5.96728 -3.98873 3.23910 3.34800 3.40828 3.45291 3.62248 4.50199 4.71666 4.76423 4.83238 4.89130 5.07708 5.26715 5.39327 5.39941 5.56931 5.65766 5.66617 5.82122 5.91331 5.94908 5.98086 6.12518 6.13420 6.26369 6.33724 6.39170 6.70240 6.81617 7.00845 7.70301 7.81222 8.04320 8.28557 8.43305 8.77524 9.07822 9.64502 11.14953 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.048046 B = 0.006520 C = 0.006267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.629744 B = 4293.720805 C = 4466.762147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.018 3.982 10 C 0.082 3.918 11 N -0.600 5.600 12 C 0.129 3.871 13 C -0.154 4.154 14 C -0.116 4.116 15 C -0.139 4.139 16 C -0.110 4.110 17 C -0.147 4.147 18 C 0.525 3.475 19 O -0.552 6.552 20 H 0.260 0.740 21 H 0.013 0.987 22 H 0.019 0.981 23 H 0.083 0.917 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.584 -16.646 -3.225 16.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.020 4.020 10 C -0.040 4.040 11 N -0.331 5.331 12 C 0.006 3.994 13 C -0.191 4.191 14 C -0.154 4.154 15 C -0.176 4.176 16 C -0.148 4.148 17 C -0.187 4.187 18 C 0.313 3.687 19 O -0.430 6.430 20 H 0.069 0.931 21 H 0.031 0.969 22 H 0.037 0.963 23 H 0.101 0.899 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.105 0.895 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.651 -16.333 -2.751 16.576 hybrid contribution 0.298 0.976 -0.173 1.035 sum 0.948 -15.357 -2.923 15.662 Atomic orbital electron populations 1.69978 1.06088 1.26545 1.50871 1.25002 0.94847 0.99253 0.95282 0.86563 0.79912 0.83354 0.77996 1.20697 1.21225 1.19800 1.21123 0.93051 0.90804 1.50603 0.92576 1.19294 0.94269 0.91164 0.97256 1.22137 0.96671 0.83269 1.01964 1.47004 1.56514 1.24888 1.04726 1.21159 0.99932 0.95562 0.82705 1.22345 0.99153 0.94147 1.03473 1.21370 0.98130 0.98149 0.97715 1.21584 0.97903 1.03455 0.94693 1.21394 0.97840 0.96258 0.99354 1.22327 0.98643 0.93761 1.03939 1.19495 0.82201 0.84774 0.82194 1.90725 1.51790 1.58561 1.41972 0.93051 0.96852 0.96284 0.89896 0.92361 0.91038 0.91726 0.89459 0.90497 0.92127 0.92258 0.91710 0.90126 0.91336 0.91776 0.89013 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.63 13.29 55.43 0.74 -26.89 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.49 5.21 -27.89 -0.15 0.34 16 10 C 0.08 1.81 4.82 -4.04 -0.02 1.79 16 11 N -0.60 -10.91 1.99 -175.42 -0.35 -11.26 16 12 C 0.13 1.83 5.20 -4.82 -0.03 1.80 16 13 C -0.15 -1.66 5.63 -26.61 -0.15 -1.81 16 14 C -0.12 -1.13 5.21 -27.47 -0.14 -1.27 16 15 C -0.14 -1.59 5.64 -27.77 -0.16 -1.75 16 16 C -0.11 -1.25 5.61 -26.97 -0.15 -1.40 16 17 C -0.15 -2.04 5.54 -27.60 -0.15 -2.19 16 18 C 0.53 9.95 5.32 -11.95 -0.06 9.89 16 19 O -0.55 -13.02 15.59 5.56 0.09 -12.93 16 20 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 21 H 0.01 0.37 7.86 -51.93 -0.41 -0.04 16 22 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.08 2.01 6.58 -51.93 -0.34 1.67 16 24 H 0.06 1.18 7.79 -51.93 -0.40 0.78 16 25 H 0.07 1.08 7.86 -51.93 -0.41 0.67 16 26 H 0.06 0.83 7.88 -51.93 -0.41 0.42 16 27 H 0.09 0.97 4.13 -51.93 -0.21 0.76 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.50 7.84 -51.93 -0.41 0.10 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.17 4.91 -51.93 -0.25 0.91 16 33 H 0.07 0.62 7.72 -51.93 -0.40 0.22 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 1.12 5.09 -51.93 -0.26 0.86 16 36 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 277.03 15.07 4.17 4.17 Total: -1.00 -33.48 277.03 -7.38 -40.86 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -5.59 Total: -2.68 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -1.42 Total: -8.46 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.39 Total: -38.15 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.09 Total: -12.93 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.48 -7.38 -40.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019427084.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.160 kcal (2) G-P(sol) polarization free energy of solvation -33.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds