Wall clock time and date at job start Mon Mar 30 2020 20:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00449 * 2 1 4 4 H 1.48489 * 109.47156 * 270.00248 * 3 2 1 5 5 H 1.48501 * 109.46730 * 29.99984 * 3 2 1 6 6 H 1.48501 * 109.47037 * 149.99948 * 3 2 1 7 7 C 1.37879 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00311 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00269 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47827 * 184.65716 * 9 7 2 11 11 C 1.46897 * 111.00545 * 162.96042 * 10 9 7 12 12 C 1.52996 * 109.47274 * 189.99847 * 11 10 9 13 13 H 1.09005 * 110.33160 * 57.75411 * 12 11 10 14 14 C 1.54476 * 110.37345 * 179.97438 * 12 11 10 15 15 C 1.54510 * 104.06516 * 142.92098 * 14 12 11 16 16 C 1.54484 * 104.06112 * 0.02562 * 15 14 12 17 17 O 1.44425 * 104.90053 * 335.96542 * 16 15 14 18 18 C 1.46904 * 110.99729 * 286.92093 * 10 9 7 19 19 C 1.53001 * 117.50069 * 3.08327 * 18 10 9 20 20 C 1.53002 * 60.00301 * 252.52030 * 19 18 10 21 21 H 0.97000 * 119.99740 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47135 * 64.65161 * 9 7 2 23 23 H 1.09005 * 109.47142 * 304.65615 * 9 7 2 24 24 H 1.09004 * 109.47123 * 69.99859 * 11 10 9 25 25 H 1.09000 * 109.46944 * 310.00432 * 11 10 9 26 26 H 1.09003 * 110.51316 * 24.27992 * 14 12 11 27 27 H 1.08998 * 110.51664 * 261.56860 * 14 12 11 28 28 H 1.08999 * 110.51713 * 241.36069 * 15 14 12 29 29 H 1.09000 * 110.63098 * 118.70216 * 15 14 12 30 30 H 1.09008 * 110.37235 * 94.84881 * 16 15 14 31 31 H 1.08999 * 110.37557 * 217.07891 * 16 15 14 32 32 H 1.09003 * 115.55211 * 148.80264 * 18 10 9 33 33 H 1.09003 * 117.49418 * 0.02562 * 19 18 10 34 34 H 1.08999 * 117.49665 * 145.02225 * 19 18 10 35 35 H 1.09000 * 117.49113 * 252.51250 * 20 19 18 36 36 H 1.08997 * 117.52000 * 107.48188 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2016 -3.6136 0.1113 11 6 1.5188 -4.8494 0.5166 12 6 2.5588 -5.9166 0.8633 13 1 3.2179 -5.5600 1.6549 14 6 1.8624 -7.2266 1.2936 15 6 2.7584 -8.3391 0.7047 16 6 3.8906 -7.5696 -0.0112 17 8 3.3280 -6.2732 -0.3089 18 6 2.9370 -3.8063 -1.1457 19 6 2.6633 -2.8198 -2.2827 20 6 2.1368 -4.2536 -2.3707 21 1 -0.4850 0.8401 -0.0004 22 1 0.6880 -2.5936 -0.9290 23 1 0.5636 -2.5218 0.8451 24 1 0.8932 -5.2043 -0.3025 25 1 0.8966 -4.6513 1.3894 26 1 0.8586 -7.2817 0.8723 27 1 1.8260 -7.3008 2.3804 28 1 2.1976 -8.9442 -0.0077 29 1 3.1653 -8.9651 1.4988 30 1 4.7540 -7.4666 0.6462 31 1 4.1739 -8.0807 -0.9313 32 1 3.9534 -4.1862 -1.0423 33 1 1.9379 -2.0275 -2.0979 34 1 3.4999 -2.5503 -2.9274 35 1 2.6270 -4.9274 -3.0734 36 1 1.0649 -4.4052 -2.2439 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042549205.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:47:59 Heat of formation + Delta-G solvation = -12.075991 kcal Electronic energy + Delta-G solvation = -16264.995521 eV Core-core repulsion = 13750.214138 eV Total energy + Delta-G solvation = -2514.781382 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.32665 -37.68771 -33.05807 -32.50625 -31.82865 -29.63709 -26.82575 -24.30921 -22.62913 -21.88999 -21.12532 -20.57274 -18.69231 -16.51591 -16.19745 -15.55684 -15.31197 -15.05988 -14.59248 -13.71339 -13.63710 -13.33608 -12.49245 -12.18041 -12.01622 -11.60196 -11.43990 -11.18654 -11.03225 -10.86798 -10.70261 -10.60855 -10.45475 -10.13216 -9.80167 -9.64577 -9.36067 -9.19116 -8.96358 -8.38521 -7.10823 -5.97092 -3.95937 3.36049 3.42122 3.47374 4.17119 4.46544 4.69280 4.74513 4.86806 5.02006 5.13298 5.35491 5.41129 5.46818 5.70096 5.72225 5.81418 5.85302 5.91573 5.92586 5.98549 6.05752 6.14318 6.28582 6.41418 6.48804 6.79306 6.95622 7.16321 7.22923 7.31195 7.51302 7.90565 8.17154 8.32705 8.61525 9.11980 9.66097 11.13411 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.045101 B = 0.006897 C = 0.006563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.673231 B = 4058.999558 C = 4265.040746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.052 3.948 3 Si 0.896 3.104 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.491 4.491 8 H 0.064 0.936 9 C 0.186 3.814 10 N -0.507 5.507 11 C 0.063 3.937 12 C 0.083 3.917 13 H 0.072 0.928 14 C -0.151 4.151 15 C -0.153 4.153 16 C 0.040 3.960 17 O -0.354 6.354 18 C 0.058 3.942 19 C -0.183 4.183 20 C -0.219 4.219 21 H 0.260 0.740 22 H -0.004 1.004 23 H 0.029 0.971 24 H 0.033 0.967 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.130 0.870 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.496 -14.013 0.413 14.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.148 4.148 3 Si 0.724 3.276 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.530 4.530 8 H 0.082 0.918 9 C 0.061 3.939 10 N -0.230 5.230 11 C -0.066 4.066 12 C 0.025 3.975 13 H 0.090 0.910 14 C -0.189 4.189 15 C -0.191 4.191 16 C -0.038 4.038 17 O -0.273 6.273 18 C -0.051 4.051 19 C -0.220 4.220 20 C -0.258 4.258 21 H 0.070 0.930 22 H 0.014 0.986 23 H 0.047 0.953 24 H 0.051 0.949 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.126 0.874 33 H 0.148 0.852 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.701 -13.623 0.612 14.424 hybrid contribution -0.248 0.495 -0.445 0.710 sum 4.453 -13.128 0.168 13.864 Atomic orbital electron populations 1.69960 1.06017 1.26643 1.51581 1.24977 0.94825 0.99192 0.95834 0.86524 0.79835 0.83239 0.78014 1.20782 1.21428 1.19810 1.21136 0.93650 0.89561 1.48677 0.91761 1.19857 0.90361 0.87731 0.95951 1.62173 1.28975 1.03580 1.28251 1.22126 0.94020 0.90423 0.99995 1.23109 0.92736 0.93507 0.88122 0.90964 1.22967 1.00091 0.94712 1.01136 1.22904 0.97585 0.98385 1.00214 1.23332 0.95521 0.85246 0.99669 1.89372 1.67144 1.33057 1.37710 1.22409 0.97545 1.01668 0.83493 1.23557 1.03978 0.93714 1.00765 1.23155 0.99703 0.98662 1.04279 0.93041 0.98647 0.95330 0.94921 0.90334 0.90812 0.90776 0.91154 0.91112 0.92856 0.89862 0.87370 0.85249 0.90477 0.90393 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 2 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 3 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.49 -13.77 6.87 -34.44 -0.24 -14.01 16 8 H 0.06 1.83 7.80 -52.48 -0.41 1.42 16 9 C 0.19 4.86 4.27 -4.98 -0.02 4.84 16 10 N -0.51 -11.32 4.67 -228.08 -1.07 -12.39 16 11 C 0.06 1.17 4.63 -3.83 -0.02 1.15 16 12 C 0.08 1.29 3.45 -25.96 -0.09 1.20 16 13 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 14 C -0.15 -1.82 6.63 -25.16 -0.17 -1.98 16 15 C -0.15 -1.59 7.09 -25.16 -0.18 -1.77 16 16 C 0.04 0.47 7.62 37.94 0.29 0.76 16 17 O -0.35 -5.68 8.60 -35.23 -0.30 -5.98 16 18 C 0.06 1.22 4.32 -67.71 -0.29 0.93 16 19 C -0.18 -3.91 8.87 -26.73 -0.24 -4.14 16 20 C -0.22 -4.26 9.15 -26.73 -0.24 -4.51 16 21 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 22 H 0.00 -0.11 6.04 -51.93 -0.31 -0.43 16 23 H 0.03 0.80 7.79 -51.93 -0.40 0.40 16 24 H 0.03 0.62 6.83 -51.93 -0.35 0.27 16 25 H 0.08 1.42 7.85 -51.93 -0.41 1.01 16 26 H 0.07 0.89 7.87 -51.93 -0.41 0.48 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.11 2.23 7.26 -51.93 -0.38 1.85 16 33 H 0.13 3.22 4.91 -51.93 -0.26 2.97 16 34 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 35 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.08 1.59 7.14 -51.93 -0.37 1.22 16 LS Contribution 282.73 15.07 4.26 4.26 Total: -1.00 -29.76 282.73 -8.50 -38.26 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -5.82 Total: 1.18 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -1.29 Total: -16.15 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: -0.33 Total: -38.42 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.30 Total: -5.98 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.76 -8.50 -38.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549205.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.187 kcal (2) G-P(sol) polarization free energy of solvation -29.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds