Wall clock time and date at job start Mon Mar 30 2020 20:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99975 * 2 1 4 4 H 1.48496 * 109.46698 * 269.99649 * 3 2 1 5 5 H 1.48496 * 109.47307 * 30.00146 * 3 2 1 6 6 H 1.48504 * 109.46906 * 149.99879 * 3 2 1 7 7 C 1.37884 * 119.99799 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99987 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99756 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.46970 * 181.10679 * 9 7 2 11 11 C 1.46907 * 111.00402 * 287.70513 * 10 9 7 12 12 C 1.52997 * 117.49816 * 239.38735 * 11 10 9 13 13 C 1.52993 * 117.49722 * 170.76434 * 11 10 9 14 14 C 1.46897 * 110.99997 * 163.74906 * 10 9 7 15 15 H 1.09002 * 110.54245 * 70.69623 * 14 10 9 16 16 C 1.54974 * 110.53158 * 193.32785 * 14 10 9 17 17 C 1.54886 * 102.77640 * 156.56787 * 16 14 10 18 18 C 1.54266 * 104.19947 * 322.08228 * 17 16 14 19 19 C 1.53877 * 106.59697 * 23.61240 * 18 17 16 20 20 H 1.08998 * 110.03394 * 119.28029 * 19 18 17 21 21 O 1.42900 * 110.03252 * 240.66580 * 19 18 17 22 22 H 0.96999 * 119.99283 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47094 * 61.11366 * 9 7 2 24 24 H 1.08994 * 109.47401 * 301.10712 * 9 7 2 25 25 H 1.09003 * 115.54219 * 25.09339 * 11 10 9 26 26 H 1.08999 * 117.49870 * 0.02562 * 12 11 10 27 27 H 1.08995 * 117.49593 * 145.01758 * 12 11 10 28 28 H 1.09003 * 117.49473 * 214.97413 * 13 11 10 29 29 H 1.09001 * 117.50730 * 0.02562 * 13 11 10 30 30 H 1.08997 * 110.71546 * 38.25196 * 16 14 10 31 31 H 1.09004 * 110.91920 * 274.97570 * 16 14 10 32 32 H 1.09001 * 110.48335 * 203.40162 * 17 16 14 33 33 H 1.09005 * 110.59576 * 80.82227 * 17 16 14 34 34 H 1.08990 * 110.03306 * 264.32897 * 18 17 16 35 35 H 1.08995 * 110.07219 * 142.91481 * 18 17 16 36 36 H 0.96694 * 113.99689 * 297.90858 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5789 -0.0261 11 6 3.7839 -3.2386 1.2684 12 6 5.0146 -3.7703 2.0056 13 6 4.0381 -4.7453 1.3448 14 6 5.4178 -2.6292 -0.4114 15 1 6.0456 -2.2334 0.3869 16 6 5.8350 -4.0804 -0.7602 17 6 7.0621 -3.8718 -1.6820 18 6 6.6944 -2.6349 -2.5274 19 6 5.6497 -1.8451 -1.7196 20 1 6.0275 -0.8476 -1.4950 21 8 4.4293 -1.7514 -2.4570 22 1 -0.4849 0.8401 -0.0004 23 1 3.8752 -0.6971 0.8993 24 1 3.8746 -0.6638 -0.8804 25 1 2.9712 -2.8339 1.8717 26 1 5.9855 -3.6302 1.5304 27 1 5.0118 -3.7155 3.0942 28 1 3.3929 -5.3320 1.9988 29 1 4.3669 -5.2472 0.4348 30 1 5.0347 -4.5942 -1.2927 31 1 6.1154 -4.6312 0.1376 32 1 7.2102 -4.7413 -2.3225 33 1 7.9571 -3.6777 -1.0909 34 1 6.2702 -2.9474 -3.4815 35 1 7.5788 -2.0204 -2.6956 36 1 4.5122 -1.2779 -3.2960 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044415025.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:48:03 Heat of formation + Delta-G solvation = -25.674865 kcal Electronic energy + Delta-G solvation = -16684.623261 eV Core-core repulsion = 14169.252187 eV Total energy + Delta-G solvation = -2515.371074 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.93266 -38.11437 -35.69829 -35.17083 -33.76487 -29.91923 -28.59107 -27.33532 -23.81800 -23.39885 -21.88672 -21.54822 -20.12963 -18.83460 -18.35744 -17.22854 -16.41317 -16.32145 -15.67938 -15.44736 -14.87945 -14.69997 -14.32339 -13.90562 -13.51706 -13.29527 -12.95658 -12.80023 -12.43476 -12.21157 -12.09428 -11.77839 -11.72715 -11.47675 -11.45512 -11.33282 -11.11868 -11.03724 -10.75798 -10.54907 -8.67106 -8.22949 -6.22256 1.32128 1.35150 1.45511 2.37030 2.91619 3.09628 3.25801 3.51669 3.70915 3.73705 4.04172 4.10320 4.23081 4.34411 4.44057 4.45443 4.51455 4.74832 4.78836 4.88460 4.91636 5.00587 5.05407 5.11170 5.14513 5.17866 5.24854 5.31809 5.36413 5.49803 5.67411 6.12174 6.52304 6.76786 6.82812 7.13463 7.38890 8.94947 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.027069 B = 0.010606 C = 0.008533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.156933 B = 2639.315298 C = 3280.604627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.001 3.999 3 Si 0.950 3.050 4 H -0.262 1.262 5 H -0.283 1.283 6 H -0.256 1.256 7 C -0.496 4.496 8 H 0.026 0.974 9 C 0.177 3.823 10 N -0.489 5.489 11 C 0.003 3.997 12 C -0.205 4.205 13 C -0.172 4.172 14 C 0.069 3.931 15 H 0.054 0.946 16 C -0.116 4.116 17 C -0.115 4.115 18 C -0.145 4.145 19 C 0.094 3.906 20 H 0.048 0.952 21 O -0.556 6.556 22 H 0.264 0.736 23 H -0.032 1.032 24 H 0.055 0.945 25 H 0.082 0.918 26 H 0.114 0.886 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.030 -5.460 -2.305 18.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.194 4.194 3 Si 0.774 3.226 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.181 1.181 7 C -0.534 4.534 8 H 0.044 0.956 9 C 0.050 3.950 10 N -0.210 5.210 11 C -0.107 4.107 12 C -0.244 4.244 13 C -0.210 4.210 14 C -0.039 4.039 15 H 0.072 0.928 16 C -0.153 4.153 17 C -0.153 4.153 18 C -0.183 4.183 19 C 0.035 3.965 20 H 0.066 0.934 21 O -0.361 6.361 22 H 0.073 0.927 23 H -0.014 1.014 24 H 0.072 0.928 25 H 0.100 0.900 26 H 0.132 0.868 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.125 0.875 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 17.382 -5.913 -2.175 18.489 hybrid contribution -0.008 1.590 0.261 1.611 sum 17.374 -4.323 -1.915 18.006 Atomic orbital electron populations 1.70079 1.08115 1.27745 1.53800 1.25841 0.95591 1.03048 0.94935 0.85680 0.79041 0.78657 0.79263 1.18661 1.20924 1.18050 1.21236 0.91436 0.92626 1.48149 0.95560 1.20015 0.93942 0.86349 0.94661 1.61701 1.15781 1.17659 1.25853 1.22566 0.99388 0.96752 0.91989 1.23684 0.95602 1.05140 0.99993 1.23307 1.02702 0.91985 1.03015 1.22875 0.88708 0.97548 0.94787 0.92811 1.22881 0.97726 0.94519 1.00201 1.22298 0.97306 0.97872 0.97841 1.22836 0.98641 0.97622 0.99184 1.22577 0.85108 0.97128 0.91714 0.93387 1.86953 1.32587 1.79841 1.36768 0.92727 1.01447 0.92762 0.89985 0.86795 0.88315 0.88505 0.87477 0.92247 0.89623 0.90110 0.89979 0.90638 0.89539 0.77616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.48 13.96 21.45 0.30 -62.18 16 2 C 0.00 0.09 5.47 84.66 0.46 0.55 16 3 Si 0.95 46.14 27.45 68.60 1.88 48.02 16 4 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 5 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 6 H -0.26 -11.76 6.57 99.48 0.65 -11.11 16 7 C -0.50 -30.55 9.12 25.60 0.23 -30.32 16 8 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 9 C 0.18 9.02 3.14 85.56 0.27 9.29 16 10 N -0.49 -21.46 4.12 -844.01 -3.47 -24.93 16 11 C 0.00 0.12 5.79 44.91 0.26 0.38 16 12 C -0.21 -6.12 9.00 30.59 0.28 -5.84 16 13 C -0.17 -5.48 9.56 30.59 0.29 -5.19 16 14 C 0.07 2.32 1.95 46.02 0.09 2.41 16 15 H 0.05 1.72 6.73 -2.39 -0.02 1.71 16 16 C -0.12 -3.09 4.18 31.91 0.13 -2.96 16 17 C -0.12 -2.28 6.83 31.67 0.22 -2.06 16 18 C -0.14 -3.10 6.61 31.32 0.21 -2.90 16 19 C 0.09 2.86 3.13 31.32 0.10 2.96 16 20 H 0.05 1.41 8.12 -2.39 -0.02 1.39 16 21 O -0.56 -20.42 10.39 -148.98 -1.55 -21.97 16 22 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 23 H -0.03 -1.67 7.18 -2.39 -0.02 -1.68 16 24 H 0.05 2.70 4.51 -2.39 -0.01 2.69 16 25 H 0.08 3.91 7.57 -2.39 -0.02 3.89 16 26 H 0.11 3.02 4.53 -2.39 -0.01 3.01 16 27 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 28 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 29 H 0.11 3.24 5.35 -2.39 -0.01 3.23 16 30 H 0.06 1.87 7.53 -2.39 -0.02 1.85 16 31 H 0.09 2.03 5.05 -2.38 -0.01 2.02 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.07 1.60 7.95 -2.39 -0.02 1.58 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.38 10.24 9.11 -74.06 -0.67 9.57 16 Total: -1.00 -74.02 272.18 0.05 -73.97 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.35 Total: 20.75 kcal Atomic # 6 Polarization: -36.21 SS G_CDS: 2.54 Total: -33.67 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -3.17 Total: -87.11 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -1.55 Total: -21.97 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.88 Total: 48.02 kcal Total: -74.02 0.05 -73.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044415025.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.299 kcal (2) G-P(sol) polarization free energy of solvation -74.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds