Wall clock time and date at job start Mon Mar 30 2020 20:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00348 * 2 1 4 4 H 1.48496 * 109.47126 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46818 * 299.99979 * 3 2 1 6 6 H 1.48497 * 109.46851 * 59.99853 * 3 2 1 7 7 C 1.37881 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00064 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00099 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47293 * 174.16497 * 9 7 2 11 11 C 1.46904 * 110.99686 * 284.05312 * 10 9 7 12 12 C 1.53001 * 117.49769 * 138.79868 * 11 10 9 13 13 C 1.52993 * 117.50079 * 70.13699 * 11 10 9 14 14 C 1.46908 * 111.00010 * 160.10034 * 10 9 7 15 15 H 1.09001 * 110.53818 * 62.79112 * 14 10 9 16 16 C 1.54261 * 110.48276 * 185.40658 * 14 10 9 17 17 C 1.53871 * 106.59740 * 142.28688 * 16 14 10 18 18 C 1.54269 * 106.59869 * 359.97438 * 17 16 14 19 19 C 1.54889 * 104.31214 * 336.32384 * 18 17 16 20 20 H 1.08998 * 110.75317 * 279.69774 * 19 18 17 21 21 O 1.42901 * 110.75722 * 156.32388 * 19 18 17 22 22 H 0.96995 * 119.99481 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47055 * 54.16085 * 9 7 2 24 24 H 1.09006 * 109.47375 * 294.16398 * 9 7 2 25 25 H 1.09006 * 115.54587 * 284.46033 * 11 10 9 26 26 H 1.09000 * 117.49691 * 359.97438 * 12 11 10 27 27 H 1.08995 * 117.49744 * 145.01689 * 12 11 10 28 28 H 1.09001 * 117.49831 * 214.97676 * 13 11 10 29 29 H 1.09006 * 117.49911 * 359.97244 * 13 11 10 30 30 H 1.08997 * 110.03666 * 22.99967 * 16 14 10 31 31 H 1.09005 * 110.07461 * 261.59002 * 16 14 10 32 32 H 1.09000 * 110.03781 * 240.71460 * 17 16 14 33 33 H 1.09009 * 110.07387 * 119.30383 * 17 16 14 34 34 H 1.09003 * 110.48747 * 95.06857 * 18 17 16 35 35 H 1.08997 * 110.48566 * 217.57724 * 18 17 16 36 36 H 0.96700 * 113.99452 * 61.45445 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.1993 -3.6121 -0.1420 11 6 2.6741 -3.7263 -1.5275 12 6 4.1589 -4.0262 -1.7430 13 6 3.6074 -2.6310 -2.0469 14 6 1.6022 -4.8740 0.3156 15 1 0.7413 -5.1350 -0.2999 16 6 2.6485 -6.0072 0.2892 17 6 2.3794 -6.8828 1.5255 18 6 1.1793 -6.2507 2.2605 19 6 1.1911 -4.7691 1.8091 20 1 1.9285 -4.1991 2.3742 21 8 -0.1084 -4.1893 1.9404 22 1 -0.4849 0.8400 -0.0004 23 1 0.5479 -2.5128 -0.8334 24 1 0.7054 -2.6038 0.9373 25 1 1.9654 -4.1602 -2.2330 26 1 4.7834 -4.1384 -0.8567 27 1 4.4270 -4.6570 -2.5905 28 1 3.5131 -2.3444 -3.0944 29 1 3.8689 -1.8253 -1.3608 30 1 3.6536 -5.5886 0.3397 31 1 2.5360 -6.5991 -0.6192 32 1 3.2539 -6.8892 2.1761 33 1 2.1358 -7.8998 1.2179 34 1 0.2498 -6.7339 1.9592 35 1 1.3126 -6.3218 3.3399 36 1 -0.4439 -4.1774 2.8473 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044415027.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:48:07 Heat of formation + Delta-G solvation = -22.543314 kcal Electronic energy + Delta-G solvation = -16446.347586 eV Core-core repulsion = 13931.112306 eV Total energy + Delta-G solvation = -2515.235280 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.90025 -36.65038 -34.57035 -33.18556 -31.85317 -28.01694 -26.97638 -25.38779 -22.23123 -21.53301 -20.28162 -20.05430 -19.10397 -16.91285 -16.41609 -15.33378 -14.84451 -14.55814 -14.23588 -14.14302 -13.32490 -12.95973 -12.56948 -12.08463 -11.86604 -11.54289 -11.33530 -11.15176 -10.95617 -10.79731 -10.72863 -10.48496 -10.18902 -10.09457 -9.78103 -9.44630 -9.39451 -9.01234 -8.92014 -8.23587 -7.19198 -5.87411 -3.86513 3.36542 3.43953 3.47888 4.46610 4.59130 4.65076 4.74988 4.90737 5.21014 5.29272 5.47055 5.70144 5.72022 5.73110 5.81486 5.82956 5.90389 5.97117 6.08021 6.22621 6.24636 6.33446 6.39567 6.48311 6.53390 6.69370 6.77326 7.08753 7.54705 7.62096 7.98020 8.16652 8.32963 8.41589 8.71288 9.20317 9.74301 11.22855 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.027404 B = 0.009636 C = 0.007687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.521156 B = 2905.215383 C = 3641.851174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.052 3.948 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.495 4.495 8 H 0.064 0.936 9 C 0.184 3.816 10 N -0.504 5.504 11 C 0.028 3.972 12 C -0.186 4.186 13 C -0.156 4.156 14 C 0.093 3.907 15 H 0.040 0.960 16 C -0.114 4.114 17 C -0.118 4.118 18 C -0.158 4.158 19 C 0.108 3.892 20 H 0.073 0.927 21 O -0.549 6.549 22 H 0.257 0.743 23 H -0.009 1.009 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.380 -11.591 2.093 12.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.148 4.148 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.534 4.534 8 H 0.082 0.918 9 C 0.060 3.940 10 N -0.229 5.229 11 C -0.081 4.081 12 C -0.224 4.224 13 C -0.193 4.193 14 C -0.017 4.017 15 H 0.058 0.942 16 C -0.152 4.152 17 C -0.156 4.156 18 C -0.196 4.196 19 C 0.049 3.951 20 H 0.091 0.909 21 O -0.354 6.354 22 H 0.067 0.933 23 H 0.009 0.991 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.109 0.891 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.134 0.866 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 4.696 -11.290 1.737 12.351 hybrid contribution -0.458 0.702 -0.001 0.838 sum 4.239 -10.588 1.736 11.536 Atomic orbital electron populations 1.69998 1.05898 1.26112 1.51753 1.24969 0.94782 0.98928 0.96132 0.86577 0.80113 0.84164 0.77361 1.19771 1.21301 1.21254 1.21303 0.93323 0.89994 1.48744 0.91771 1.19964 0.89659 0.86548 0.97808 1.62101 1.40505 1.03057 1.17225 1.22009 0.91100 1.03887 0.91139 1.23039 0.97218 1.00149 1.01979 1.23098 1.02544 0.92788 1.00834 1.22349 0.94628 0.90939 0.93762 0.94213 1.22134 1.00449 0.95591 0.97024 1.21986 0.97796 0.98623 0.97206 1.23046 0.99116 0.97637 0.99807 1.22817 0.85036 0.90620 0.96633 0.90945 1.86692 1.33223 1.83281 1.32159 0.93323 0.99070 0.92498 0.91678 0.89078 0.90389 0.90294 0.86551 0.90325 0.92333 0.91902 0.92223 0.91218 0.91854 0.78653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 2 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 3 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 7 C -0.49 -14.00 7.86 -34.44 -0.27 -14.27 16 8 H 0.06 1.79 5.75 -52.49 -0.30 1.49 16 9 C 0.18 4.96 4.58 -4.98 -0.02 4.94 16 10 N -0.50 -11.12 4.39 -217.93 -0.96 -12.07 16 11 C 0.03 0.57 4.36 -67.71 -0.30 0.27 16 12 C -0.19 -3.14 9.47 -26.69 -0.25 -3.39 16 13 C -0.16 -3.07 9.47 -26.70 -0.25 -3.32 16 14 C 0.09 1.75 2.35 -65.85 -0.15 1.60 16 15 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 16 C -0.11 -1.71 5.53 -25.62 -0.14 -1.85 16 17 C -0.12 -1.48 6.80 -25.61 -0.17 -1.65 16 18 C -0.16 -2.10 6.54 -25.07 -0.16 -2.26 16 19 C 0.11 1.89 3.22 -24.54 -0.08 1.81 16 20 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 21 O -0.55 -10.36 11.38 -35.23 -0.40 -10.76 16 22 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 23 H -0.01 -0.26 8.00 -51.93 -0.42 -0.68 16 24 H 0.06 1.61 5.06 -51.93 -0.26 1.35 16 25 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 26 H 0.09 1.53 7.62 -51.93 -0.40 1.13 16 27 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 29 H 0.12 2.58 5.49 -51.93 -0.29 2.30 16 30 H 0.08 1.22 6.77 -51.93 -0.35 0.87 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.37 5.10 9.11 45.56 0.42 5.52 16 LS Contribution 283.07 15.07 4.27 4.27 Total: -1.00 -31.47 283.07 -8.24 -39.71 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -4.96 Total: 5.25 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -1.91 Total: -16.72 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: -0.22 Total: -38.73 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -0.40 Total: -10.76 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.47 -8.24 -39.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044415027.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.168 kcal (2) G-P(sol) polarization free energy of solvation -31.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds