Wall clock time and date at job start Mon Mar 30 2020 20:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00189 * 2 1 4 4 H 1.48492 * 109.47231 * 269.99423 * 3 2 1 5 5 H 1.48499 * 109.47270 * 29.99790 * 3 2 1 6 6 H 1.48502 * 109.46965 * 149.99351 * 3 2 1 7 7 C 1.37879 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00290 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99995 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47305 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47134 * 180.02562 * 10 9 7 12 12 N 1.46901 * 109.47158 * 180.02562 * 11 10 9 13 13 C 1.46830 * 110.98168 * 294.21498 * 12 11 10 14 14 C 1.53038 * 109.51757 * 174.15669 * 13 12 11 15 15 C 1.53127 * 109.27941 * 59.17550 * 14 13 12 16 16 C 1.53117 * 109.15989 * 302.34585 * 15 14 13 17 17 H 1.09001 * 109.50874 * 297.71787 * 16 15 14 18 18 C 1.50701 * 109.53492 * 177.61137 * 16 15 14 19 19 O 1.20760 * 119.99851 * 120.17672 * 18 16 15 20 20 C 1.46847 * 111.00144 * 170.00079 * 12 11 10 21 21 H 0.97001 * 120.00012 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.46996 * 59.99316 * 9 7 2 23 23 H 1.08998 * 109.47037 * 300.00329 * 9 7 2 24 24 H 1.09002 * 109.47238 * 60.00251 * 10 9 7 25 25 H 1.08998 * 109.47460 * 300.00215 * 10 9 7 26 26 H 1.09001 * 109.47466 * 60.00169 * 11 10 9 27 27 H 1.09002 * 109.47083 * 299.99583 * 11 10 9 28 28 H 1.08995 * 109.46742 * 54.13906 * 13 12 11 29 29 H 1.09004 * 109.45381 * 294.16241 * 13 12 11 30 30 H 1.08997 * 109.50308 * 299.23764 * 14 13 12 31 31 H 1.08996 * 109.53785 * 179.13596 * 14 13 12 32 32 H 1.08997 * 109.52581 * 182.44219 * 15 14 13 33 33 H 1.08998 * 109.57452 * 62.28001 * 15 14 13 34 34 H 1.07997 * 120.00120 * 300.17798 * 18 16 15 35 35 H 1.09002 * 109.46448 * 65.81961 * 20 12 11 36 36 H 1.08994 * 109.45958 * 305.84326 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 7 2.4345 -6.1037 0.0005 13 6 3.2045 -6.1379 -1.2493 14 6 4.2844 -7.2182 -1.1551 15 6 3.6213 -8.5755 -0.9048 16 6 2.7867 -8.4984 0.3766 17 1 3.4391 -8.2865 1.2237 18 6 2.0832 -9.8124 0.5996 19 8 2.2915 -10.4455 1.6066 20 6 1.7501 -7.3811 0.2380 21 1 -0.4850 0.8401 -0.0004 22 1 0.6245 -2.5571 -0.8896 23 1 0.6239 -2.5567 0.8902 24 1 2.8717 -3.6045 0.8905 25 1 2.8718 -3.6045 -0.8894 26 1 0.8536 -5.0446 -0.8903 27 1 0.8531 -5.0451 0.8897 28 1 3.6742 -5.1681 -1.4132 29 1 2.5369 -6.3633 -2.0809 30 1 4.9604 -6.9862 -0.3321 31 1 4.8463 -7.2542 -2.0884 32 1 4.3891 -9.3411 -0.7939 33 1 2.9751 -8.8268 -1.7458 34 1 1.3928 -10.1878 -0.1412 35 1 1.0894 -7.6005 -0.6008 36 1 1.1637 -7.3139 1.1543 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054236978.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:48:15 Heat of formation + Delta-G solvation = -56.547283 kcal Electronic energy + Delta-G solvation = -15337.647296 eV Core-core repulsion = 12820.937494 eV Total energy + Delta-G solvation = -2516.709802 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.88332 -38.37060 -34.84446 -33.02472 -31.35303 -30.85681 -26.73829 -24.92954 -23.92270 -22.32312 -21.25140 -20.01981 -19.75706 -16.62409 -16.17611 -15.77130 -15.14693 -15.01152 -14.69322 -14.42046 -14.15434 -13.55472 -13.46497 -13.07126 -12.60781 -12.23182 -11.75538 -11.55401 -11.33595 -11.03253 -10.94404 -10.76637 -10.61469 -10.48690 -10.42298 -9.75333 -9.55776 -9.31469 -9.04183 -8.33483 -8.12103 -5.98840 -4.00843 1.72836 3.32822 3.39070 3.42867 3.85321 4.24147 4.47620 4.60546 4.66548 4.78690 5.03288 5.24137 5.33839 5.37129 5.44592 5.53515 5.56909 5.65854 5.76996 5.79920 5.96163 6.02183 6.09510 6.24045 6.30349 6.69742 6.75815 7.11100 7.13616 7.32238 7.36169 7.69316 7.83992 8.01580 8.44921 9.06379 9.63199 11.12654 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.055466 B = 0.004510 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.688916 B = 6207.387037 C = 6494.158629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.105 4.105 11 C 0.057 3.943 12 N -0.537 5.537 13 C 0.050 3.950 14 C -0.115 4.115 15 C -0.108 4.108 16 C -0.155 4.155 17 H 0.101 0.899 18 C 0.353 3.647 19 O -0.462 6.462 20 C 0.067 3.933 21 H 0.260 0.740 22 H 0.013 0.987 23 H 0.016 0.984 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.030 0.970 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.031 0.969 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.037 0.963 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.692 -16.810 -3.501 17.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.143 4.143 11 C -0.070 4.070 12 N -0.262 5.262 13 C -0.078 4.078 14 C -0.153 4.153 15 C -0.146 4.146 16 C -0.174 4.174 17 H 0.119 0.881 18 C 0.208 3.792 19 O -0.332 6.332 20 C -0.061 4.061 21 H 0.070 0.930 22 H 0.032 0.968 23 H 0.034 0.966 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.048 0.952 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.049 0.951 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.055 0.945 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.980 -16.960 -2.555 17.860 hybrid contribution -0.228 0.952 -0.784 1.254 sum 4.752 -16.008 -3.339 17.029 Atomic orbital electron populations 1.69964 1.06070 1.26552 1.51050 1.25025 0.94836 0.99249 0.95379 0.86600 0.79897 0.83496 0.78060 1.20712 1.21241 1.19842 1.21251 0.93048 0.91037 1.50324 0.92680 1.19078 0.94046 0.91420 0.97090 1.21661 0.99163 0.92622 1.00820 1.22299 0.93606 0.90791 1.00304 1.61934 1.26796 1.02424 1.35038 1.22169 0.95500 1.00052 0.90077 1.21572 0.97983 0.93536 1.02186 1.21479 0.98811 0.98502 0.95777 1.22194 0.99159 0.94714 1.01374 0.88061 1.26057 0.80363 0.85901 0.86866 1.90401 1.56670 1.57266 1.28867 1.21871 0.94174 0.89023 1.01081 0.93046 0.96844 0.96594 0.92553 0.93407 0.95208 0.91149 0.89601 0.95071 0.90875 0.91281 0.91627 0.91560 0.89083 0.94491 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.10 -2.15 5.08 -26.73 -0.14 -2.29 16 11 C 0.06 0.96 4.96 -3.82 -0.02 0.94 16 12 N -0.54 -7.68 4.66 -234.68 -1.09 -8.77 16 13 C 0.05 0.63 5.29 -3.84 -0.02 0.61 16 14 C -0.11 -1.16 6.09 -26.65 -0.16 -1.32 16 15 C -0.11 -0.93 5.27 -26.61 -0.14 -1.07 16 16 C -0.15 -1.55 2.77 -91.69 -0.25 -1.80 16 17 H 0.10 1.19 8.12 -51.93 -0.42 0.76 16 18 C 0.35 3.30 10.45 36.01 0.38 3.68 16 19 O -0.46 -6.18 17.90 6.00 0.11 -6.08 16 20 C 0.07 0.77 4.73 -3.83 -0.02 0.76 16 21 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 22 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.05 0.96 6.43 -51.93 -0.33 0.62 16 26 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 27 H 0.07 1.20 7.99 -51.93 -0.41 0.78 16 28 H 0.09 1.21 6.21 -51.93 -0.32 0.88 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.55 8.06 -52.49 -0.42 0.13 16 35 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.90 8.01 -51.93 -0.42 0.48 16 LS Contribution 293.15 15.07 4.42 4.42 Total: -1.00 -31.52 293.15 -7.88 -39.39 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: -6.10 Total: -5.72 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -0.92 Total: -13.62 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: -0.36 Total: -35.09 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: 0.11 Total: -6.08 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.52 -7.88 -39.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054236978.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.157 kcal (2) G-P(sol) polarization free energy of solvation -31.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds