Wall clock time and date at job start Mon Mar 30 2020 20:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00123 * 2 1 4 4 H 1.48500 * 109.46795 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47028 * 299.99423 * 3 2 1 6 6 H 1.48499 * 109.46847 * 59.99926 * 3 2 1 7 7 C 1.37874 * 119.99744 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00354 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99845 * 0.02562 * 7 2 1 10 10 O 1.42902 * 109.46812 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99992 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47159 * 180.02562 * 11 10 9 13 13 N 1.46895 * 109.47121 * 65.00216 * 12 11 10 14 14 C 1.46906 * 110.99975 * 179.97438 * 13 12 11 15 15 H 1.08993 * 115.55942 * 350.69021 * 14 13 12 16 16 C 1.53005 * 117.49582 * 136.37494 * 14 13 12 17 17 C 1.52999 * 59.99936 * 107.49047 * 16 14 13 18 18 H 1.09002 * 117.50317 * 107.50538 * 17 16 14 19 19 C 1.52996 * 117.49961 * 252.50864 * 17 16 14 20 20 C 1.53000 * 117.49997 * 248.61006 * 19 17 16 21 21 C 1.53002 * 60.02940 * 252.49592 * 20 19 17 22 22 H 0.96998 * 119.99429 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47362 * 60.00009 * 9 7 2 24 24 H 1.09001 * 109.46821 * 299.99506 * 9 7 2 25 25 H 1.08998 * 109.46941 * 59.99773 * 11 10 9 26 26 H 1.09000 * 109.46840 * 300.00274 * 11 10 9 27 27 H 1.08989 * 109.47093 * 304.99847 * 12 11 10 28 28 H 1.08998 * 109.46990 * 184.99676 * 12 11 10 29 29 H 1.00906 * 110.99909 * 303.94958 * 13 12 11 30 30 H 1.08997 * 117.49904 * 0.02562 * 16 14 13 31 31 H 1.09006 * 117.51296 * 214.97200 * 16 14 13 32 32 H 1.09007 * 115.55004 * 34.27678 * 19 17 16 33 33 H 1.09002 * 117.49833 * 359.97438 * 20 19 17 34 34 H 1.09002 * 117.49953 * 144.99738 * 20 19 17 35 35 H 1.09000 * 117.49996 * 107.50493 * 21 20 19 36 36 H 1.08999 * 117.49664 * 252.51862 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0005 11 6 1.5649 -4.8755 0.0011 12 6 2.6478 -5.9563 0.0017 13 7 3.4078 -5.8873 1.2569 14 6 4.4585 -6.9134 1.2933 15 1 4.4217 -7.6527 0.4933 16 6 5.8382 -6.4938 1.8046 17 6 4.9404 -7.3827 2.6675 18 1 5.2207 -8.4309 2.7718 19 6 4.2910 -6.7476 3.8986 20 6 4.7726 -7.2172 5.2728 21 6 3.3927 -7.6366 4.7622 22 1 -0.4849 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6240 -2.5566 0.8904 25 1 0.9444 -4.9827 -0.8886 26 1 0.9450 -4.9822 0.8913 27 1 3.3214 -5.7962 -0.8401 28 1 2.1818 -6.9376 -0.0874 29 1 3.7964 -4.9663 1.3942 30 1 5.9661 -5.4566 2.1143 31 1 6.7093 -6.9571 1.3412 32 1 4.0114 -5.6992 3.7946 33 1 5.5518 -7.9789 5.2998 34 1 4.8098 -6.4777 6.0728 35 1 3.2643 -8.6740 4.4533 36 1 2.5221 -7.1728 5.2260 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716579133.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:44:48 Heat of formation + Delta-G solvation = -7.179068 kcal Electronic energy + Delta-G solvation = -15064.066234 eV Core-core repulsion = 12549.497198 eV Total energy + Delta-G solvation = -2514.569036 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.76828 -36.97507 -35.73189 -33.27909 -32.42869 -28.19470 -26.49174 -23.68059 -22.36906 -22.34494 -21.53096 -21.44694 -19.49273 -16.48873 -15.98485 -15.84447 -15.62894 -14.88295 -14.53200 -14.33547 -13.57982 -13.37611 -13.16194 -12.47102 -12.13566 -11.68698 -11.57209 -11.37984 -11.33925 -11.07486 -10.87528 -10.77835 -10.70154 -10.57474 -10.08677 -10.01906 -9.36847 -9.09324 -8.83058 -8.17319 -7.97035 -6.11165 -4.12915 3.28804 3.35269 3.41423 3.57187 4.20384 4.27123 4.34996 4.57392 4.87249 4.96772 4.97304 5.21357 5.25468 5.33356 5.39419 5.43307 5.53772 5.65953 5.68303 5.76442 5.84057 5.92912 6.10705 6.14999 6.18951 6.22274 6.36832 6.44794 7.11482 7.27492 7.43980 7.63703 7.79015 8.15176 8.57468 9.00532 9.52081 11.00427 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029424 B = 0.004937 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.371435 B = 5669.583680 C = 5935.528026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.066 0.934 9 C 0.197 3.803 10 O -0.400 6.400 11 C 0.061 3.939 12 C 0.068 3.932 13 N -0.651 5.651 14 C 0.034 3.966 15 H 0.105 0.895 16 C -0.201 4.201 17 C -0.116 4.116 18 H 0.098 0.902 19 C -0.101 4.101 20 C -0.189 4.189 21 C -0.174 4.174 22 H 0.263 0.737 23 H 0.004 0.996 24 H 0.006 0.994 25 H 0.041 0.959 26 H 0.046 0.954 27 H 0.036 0.964 28 H 0.076 0.924 29 H 0.357 0.643 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.009 -14.875 4.977 17.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.084 0.916 9 C 0.123 3.877 10 O -0.320 6.320 11 C -0.017 4.017 12 C -0.061 4.061 13 N -0.283 5.283 14 C -0.077 4.077 15 H 0.123 0.877 16 C -0.240 4.240 17 C -0.135 4.135 18 H 0.117 0.883 19 C -0.119 4.119 20 C -0.226 4.226 21 C -0.211 4.211 22 H 0.073 0.927 23 H 0.022 0.978 24 H 0.024 0.976 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.094 0.906 29 H 0.178 0.822 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.128 0.872 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.572 -15.072 5.307 17.683 hybrid contribution 0.630 1.193 -0.602 1.477 sum 8.202 -13.879 4.706 16.794 Atomic orbital electron populations 1.69977 1.06105 1.27034 1.50621 1.24948 0.94965 0.99425 0.95157 0.86296 0.79998 0.82655 0.77632 1.19515 1.20850 1.20820 1.21092 0.94026 0.89406 1.50715 0.91588 1.20182 0.88708 0.83464 0.95394 1.87786 1.35801 1.13147 1.95240 1.22302 0.94543 0.85239 0.99583 1.21990 0.95698 0.98085 0.90363 1.60184 1.24961 1.08164 1.34971 1.22455 0.90517 0.98330 0.96426 0.87702 1.23516 0.94680 1.00967 1.04861 1.21984 1.02435 0.97789 0.91320 0.88345 1.21525 1.01898 0.99456 0.89030 1.22962 0.97875 1.03880 0.97911 1.22841 0.93884 1.00183 1.04164 0.92710 0.97820 0.97605 0.94080 0.93535 0.94597 0.90611 0.82187 0.88394 0.88996 0.87206 0.89323 0.89125 0.89286 0.88960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.51 -15.17 9.43 -34.44 -0.32 -15.50 16 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.20 5.43 5.69 36.01 0.20 5.63 16 10 O -0.40 -9.55 9.85 -35.23 -0.35 -9.90 16 11 C 0.06 1.15 6.28 37.16 0.23 1.38 16 12 C 0.07 1.03 5.96 -3.83 -0.02 1.01 16 13 N -0.65 -9.78 5.96 -106.73 -0.64 -10.41 16 14 C 0.03 0.42 6.29 -67.71 -0.43 0.00 16 15 H 0.11 1.17 7.90 -51.93 -0.41 0.76 16 16 C -0.20 -2.29 9.95 -26.73 -0.27 -2.55 16 17 C -0.12 -1.32 5.85 -90.62 -0.53 -1.85 16 18 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 19 C -0.10 -1.22 5.41 -90.59 -0.49 -1.71 16 20 C -0.19 -1.98 10.25 -26.73 -0.27 -2.25 16 21 C -0.17 -1.93 10.26 -26.69 -0.27 -2.20 16 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 23 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 24 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.04 0.55 8.14 -51.94 -0.42 0.13 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.36 5.98 8.08 -39.29 -0.32 5.66 16 30 H 0.10 1.20 8.09 -51.93 -0.42 0.78 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.11 1.53 7.87 -51.93 -0.41 1.12 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 306.54 15.07 4.62 4.62 Total: -1.00 -30.27 306.54 -9.09 -39.36 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -6.17 Total: 2.27 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -2.27 Total: -16.51 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.10 Total: -36.69 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -0.35 Total: -9.90 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.27 -9.09 -39.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716579133.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.182 kcal (2) G-P(sol) polarization free energy of solvation -30.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds