Wall clock time and date at job start Mon Mar 30 2020 20:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00123 * 2 1 4 4 H 1.48500 * 109.46795 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47028 * 299.99423 * 3 2 1 6 6 H 1.48499 * 109.46847 * 59.99926 * 3 2 1 7 7 C 1.37874 * 119.99744 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00354 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99845 * 0.02562 * 7 2 1 10 10 O 1.42902 * 109.46812 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99992 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47159 * 180.02562 * 11 10 9 13 13 N 1.46895 * 109.47121 * 65.00216 * 12 11 10 14 14 C 1.46906 * 110.99975 * 179.97438 * 13 12 11 15 15 H 1.08993 * 115.55942 * 350.69021 * 14 13 12 16 16 C 1.53005 * 117.49582 * 136.37494 * 14 13 12 17 17 C 1.52999 * 59.99936 * 107.49047 * 16 14 13 18 18 H 1.09002 * 117.50317 * 107.50538 * 17 16 14 19 19 C 1.52996 * 117.49961 * 252.50864 * 17 16 14 20 20 C 1.53000 * 117.49997 * 248.61006 * 19 17 16 21 21 C 1.53002 * 60.02940 * 252.49592 * 20 19 17 22 22 H 0.96998 * 119.99429 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47362 * 60.00009 * 9 7 2 24 24 H 1.09001 * 109.46821 * 299.99506 * 9 7 2 25 25 H 1.08998 * 109.46941 * 59.99773 * 11 10 9 26 26 H 1.09000 * 109.46840 * 300.00274 * 11 10 9 27 27 H 1.08989 * 109.47093 * 304.99847 * 12 11 10 28 28 H 1.08998 * 109.46990 * 184.99676 * 12 11 10 29 29 H 1.00906 * 110.99909 * 303.94958 * 13 12 11 30 30 H 1.08997 * 117.49904 * 0.02562 * 16 14 13 31 31 H 1.09006 * 117.51296 * 214.97200 * 16 14 13 32 32 H 1.09007 * 115.55004 * 34.27678 * 19 17 16 33 33 H 1.09002 * 117.49833 * 359.97438 * 20 19 17 34 34 H 1.09002 * 117.49953 * 144.99738 * 20 19 17 35 35 H 1.09000 * 117.49996 * 107.50493 * 21 20 19 36 36 H 1.08999 * 117.49664 * 252.51862 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0005 11 6 1.5649 -4.8755 0.0011 12 6 2.6478 -5.9563 0.0017 13 7 3.4078 -5.8873 1.2569 14 6 4.4585 -6.9134 1.2933 15 1 4.4217 -7.6527 0.4933 16 6 5.8382 -6.4938 1.8046 17 6 4.9404 -7.3827 2.6675 18 1 5.2207 -8.4309 2.7718 19 6 4.2910 -6.7476 3.8986 20 6 4.7726 -7.2172 5.2728 21 6 3.3927 -7.6366 4.7622 22 1 -0.4849 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6240 -2.5566 0.8904 25 1 0.9444 -4.9827 -0.8886 26 1 0.9450 -4.9822 0.8913 27 1 3.3214 -5.7962 -0.8401 28 1 2.1818 -6.9376 -0.0874 29 1 3.7964 -4.9663 1.3942 30 1 5.9661 -5.4566 2.1143 31 1 6.7093 -6.9571 1.3412 32 1 4.0114 -5.6992 3.7946 33 1 5.5518 -7.9789 5.2998 34 1 4.8098 -6.4777 6.0728 35 1 3.2643 -8.6740 4.4533 36 1 2.5221 -7.1728 5.2260 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716579133.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:44:47 Heat of formation + Delta-G solvation = -25.967905 kcal Electronic energy + Delta-G solvation = -15064.880979 eV Core-core repulsion = 12549.497198 eV Total energy + Delta-G solvation = -2515.383781 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.75727 -38.66433 -36.82514 -35.07006 -34.06492 -29.97978 -28.29731 -24.58054 -24.53726 -23.21282 -22.87646 -22.45871 -20.43365 -18.66084 -17.51292 -17.14555 -16.84126 -16.45911 -16.11794 -15.82403 -15.04680 -14.61272 -14.51975 -13.92996 -13.48394 -13.27176 -12.96083 -12.81810 -12.64951 -12.51470 -12.35161 -12.19772 -12.00779 -11.82516 -11.70787 -11.27785 -11.01162 -10.88233 -10.29777 -10.23847 -9.06830 -8.33336 -6.45872 1.39380 1.40862 1.55399 2.33773 2.65520 3.00694 3.14038 3.20181 3.35576 3.68575 3.98587 4.05079 4.21903 4.28550 4.37152 4.43241 4.50310 4.51983 4.56017 4.76214 4.82092 4.83723 4.90478 4.93594 5.00404 5.08108 5.17303 5.29848 5.32405 5.50563 5.53727 5.94456 6.17892 6.36232 6.51890 6.80336 7.26273 8.79341 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029424 B = 0.004937 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.371435 B = 5669.583680 C = 5935.528026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.984 3.016 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.547 4.547 8 H 0.062 0.938 9 C 0.211 3.789 10 O -0.409 6.409 11 C 0.053 3.947 12 C 0.078 3.922 13 N -0.662 5.662 14 C 0.020 3.980 15 H 0.123 0.877 16 C -0.198 4.198 17 C -0.107 4.107 18 H 0.119 0.881 19 C -0.121 4.121 20 C -0.176 4.176 21 C -0.175 4.175 22 H 0.271 0.729 23 H -0.014 1.014 24 H -0.016 1.016 25 H 0.050 0.950 26 H 0.041 0.959 27 H 0.036 0.964 28 H 0.105 0.895 29 H 0.342 0.658 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.361 -15.540 5.077 18.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.806 3.194 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.080 0.920 9 C 0.136 3.864 10 O -0.329 6.329 11 C -0.024 4.024 12 C -0.051 4.051 13 N -0.292 5.292 14 C -0.090 4.090 15 H 0.140 0.860 16 C -0.236 4.236 17 C -0.126 4.126 18 H 0.137 0.863 19 C -0.139 4.139 20 C -0.213 4.213 21 C -0.212 4.212 22 H 0.080 0.920 23 H 0.003 0.997 24 H 0.002 0.998 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.123 0.877 29 H 0.161 0.839 30 H 0.101 0.899 31 H 0.130 0.870 32 H 0.101 0.899 33 H 0.123 0.877 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.924 -15.775 5.409 18.914 hybrid contribution 0.167 1.322 -0.607 1.464 sum 9.091 -14.453 4.802 17.737 Atomic orbital electron populations 1.70082 1.07799 1.28598 1.50550 1.25967 0.95945 1.03411 0.93885 0.85129 0.78651 0.77294 0.78283 1.18802 1.19599 1.19691 1.21414 0.94082 0.90821 1.52183 0.91990 1.19799 0.88585 0.84659 0.93370 1.87752 1.35538 1.14376 1.95214 1.22616 0.96154 0.83870 0.99729 1.21944 0.94766 0.97745 0.90605 1.60210 1.26241 1.07977 1.34786 1.22606 0.90414 0.98175 0.97850 0.85971 1.23529 0.94904 1.00465 1.04715 1.22033 1.01661 0.98626 0.90257 0.86321 1.21480 1.03497 0.98415 0.90521 1.23025 0.97804 1.03855 0.96603 1.22896 0.94059 1.00444 1.03767 0.92036 0.99665 0.99838 0.93181 0.94080 0.94532 0.87652 0.83884 0.89891 0.86973 0.89917 0.87707 0.88947 0.88133 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.52 13.29 21.45 0.28 -56.24 16 2 C 0.01 0.37 5.46 84.65 0.46 0.83 16 3 Si 0.98 44.66 29.54 68.60 2.03 46.69 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.55 -32.95 9.43 25.60 0.24 -32.71 16 8 H 0.06 3.69 7.81 -2.91 -0.02 3.66 16 9 C 0.21 12.06 5.69 71.24 0.41 12.47 16 10 O -0.41 -20.07 9.85 -148.98 -1.47 -21.54 16 11 C 0.05 2.02 6.28 71.98 0.45 2.48 16 12 C 0.08 2.30 5.96 86.30 0.51 2.82 16 13 N -0.66 -19.67 5.96 -491.58 -2.93 -22.61 16 14 C 0.02 0.47 6.29 44.92 0.28 0.75 16 15 H 0.12 2.40 7.90 -2.39 -0.02 2.38 16 16 C -0.20 -4.20 9.95 30.60 0.30 -3.89 16 17 C -0.11 -2.23 5.85 -10.79 -0.06 -2.29 16 18 H 0.12 2.02 8.14 -2.39 -0.02 2.01 16 19 C -0.12 -2.84 5.41 -10.77 -0.06 -2.90 16 20 C -0.18 -3.39 10.25 30.60 0.31 -3.08 16 21 C -0.17 -3.66 10.26 30.62 0.31 -3.35 16 22 H 0.27 15.17 8.31 -92.71 -0.77 14.39 16 23 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 24 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 25 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.34 11.76 8.08 -89.69 -0.72 11.03 16 30 H 0.08 2.02 8.09 -2.39 -0.02 2.00 16 31 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 32 H 0.08 2.39 7.87 -2.38 -0.02 2.37 16 33 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -65.16 306.54 1.39 -63.77 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.31 Total: 18.80 kcal Atomic # 6 Polarization: -32.04 SS G_CDS: 3.17 Total: -28.88 kcal Atomic # 7 Polarization: -76.19 SS G_CDS: -2.65 Total: -78.84 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -1.47 Total: -21.54 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -65.16 1.39 -63.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716579133.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.802 kcal (2) G-P(sol) polarization free energy of solvation -65.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds