Wall clock time and date at job start Mon Mar 30 2020 20:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86793 * 119.99939 * 2 1 4 4 H 1.48501 * 109.47134 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47345 * 300.00305 * 3 2 1 6 6 H 1.48504 * 109.47445 * 60.00032 * 3 2 1 7 7 C 1.37878 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00348 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00126 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.42895 * 114.00106 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47194 * 179.97438 * 11 10 9 13 13 N 1.46909 * 109.47316 * 64.99763 * 12 11 10 14 14 C 1.46894 * 110.99809 * 180.02562 * 13 12 11 15 15 H 1.08993 * 115.55464 * 9.33349 * 14 13 12 16 16 C 1.53004 * 117.49354 * 223.61915 * 14 13 12 17 17 C 1.53002 * 60.00020 * 252.51541 * 16 14 13 18 18 H 1.08997 * 117.51564 * 107.48586 * 17 16 14 19 19 C 1.53006 * 117.49773 * 252.51113 * 17 16 14 20 20 C 1.53001 * 117.49866 * 197.24396 * 19 17 16 21 21 C 1.53000 * 117.49497 * 128.61987 * 19 17 16 22 22 H 0.96998 * 120.00728 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46841 * 60.00069 * 9 7 2 24 24 H 1.09007 * 109.46692 * 300.00260 * 9 7 2 25 25 H 1.08997 * 109.47674 * 59.99896 * 11 10 9 26 26 H 1.09000 * 109.46909 * 299.99491 * 11 10 9 27 27 H 1.09003 * 109.47055 * 304.99812 * 12 11 10 28 28 H 1.08999 * 109.47185 * 184.99623 * 12 11 10 29 29 H 1.00903 * 110.99460 * 303.95618 * 13 12 11 30 30 H 1.08999 * 117.49432 * 145.02872 * 16 14 13 31 31 H 1.08995 * 117.50018 * 0.02562 * 16 14 13 32 32 H 1.08996 * 115.55031 * 342.95882 * 19 17 16 33 33 H 1.08996 * 117.49555 * 359.97438 * 20 19 17 34 34 H 1.08995 * 117.49577 * 145.02406 * 20 19 17 35 35 H 1.08998 * 117.49694 * 214.97781 * 21 19 17 36 36 H 1.08999 * 117.50120 * 0.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5651 -4.8754 -0.0011 12 6 2.6481 -5.9562 -0.0017 13 7 3.4083 -5.8884 1.2535 14 6 4.4597 -6.9136 1.2881 15 1 4.6271 -7.4473 0.3526 16 6 4.6409 -7.6960 2.5905 17 6 5.6763 -6.6480 2.1773 18 1 5.6965 -5.7125 2.7362 19 6 7.0344 -7.1525 1.6854 20 6 8.1917 -6.1520 1.6575 21 6 7.5466 -6.6124 0.3486 22 1 -0.4851 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 0.9452 -4.9823 -0.8913 26 1 0.9447 -4.9827 0.8887 27 1 3.3215 -5.7952 -0.8435 28 1 2.1821 -6.9374 -0.0917 29 1 3.7969 -4.9675 1.3916 30 1 4.9273 -8.7447 2.5119 31 1 3.9796 -7.4502 3.4214 32 1 7.2693 -8.1876 1.9332 33 1 7.9854 -5.1345 1.9891 34 1 9.1883 -6.5289 1.8871 35 1 8.1189 -7.2921 -0.2827 36 1 6.9163 -5.8975 -0.1801 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716579136.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:44:50 Heat of formation + Delta-G solvation = -8.088019 kcal Electronic energy + Delta-G solvation = -14980.148848 eV Core-core repulsion = 12465.540397 eV Total energy + Delta-G solvation = -2514.608451 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.83518 -37.03063 -35.76333 -33.28643 -32.44055 -28.24986 -26.52815 -23.76763 -22.53154 -22.37491 -21.63749 -21.01060 -19.88432 -16.45256 -16.07271 -15.87578 -15.54869 -14.99531 -14.75929 -14.34848 -13.68917 -13.50075 -13.12571 -12.38495 -12.13682 -11.72923 -11.61356 -11.44273 -11.31780 -11.06834 -10.92114 -10.77935 -10.75619 -10.55050 -10.12081 -9.98807 -9.64945 -9.09507 -8.83113 -8.17551 -8.06071 -6.11145 -4.12922 3.28781 3.35258 3.41404 3.51088 3.91437 4.24062 4.34788 4.57810 4.76532 4.89977 4.94478 5.07213 5.25437 5.26073 5.29838 5.41589 5.52550 5.53689 5.70088 5.74675 5.77624 5.90990 6.02795 6.08170 6.14826 6.21826 6.23349 6.36685 7.11302 7.27315 7.43853 7.62630 7.78919 8.15082 8.57296 9.00431 9.52034 11.00464 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.027530 B = 0.005036 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.828888 B = 5558.105509 C = 6274.037240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.066 0.934 9 C 0.196 3.804 10 O -0.400 6.400 11 C 0.061 3.939 12 C 0.068 3.932 13 N -0.658 5.658 14 C 0.029 3.971 15 H 0.097 0.903 16 C -0.163 4.163 17 C -0.138 4.138 18 H 0.108 0.892 19 C -0.122 4.122 20 C -0.177 4.177 21 C -0.179 4.179 22 H 0.263 0.737 23 H 0.004 0.996 24 H 0.006 0.994 25 H 0.042 0.958 26 H 0.047 0.953 27 H 0.036 0.964 28 H 0.076 0.924 29 H 0.357 0.643 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.968 -14.614 2.258 18.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.084 0.916 9 C 0.122 3.878 10 O -0.320 6.320 11 C -0.017 4.017 12 C -0.061 4.061 13 N -0.290 5.290 14 C -0.082 4.082 15 H 0.115 0.885 16 C -0.202 4.202 17 C -0.157 4.157 18 H 0.126 0.874 19 C -0.141 4.141 20 C -0.214 4.214 21 C -0.216 4.216 22 H 0.073 0.927 23 H 0.022 0.978 24 H 0.024 0.976 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.094 0.906 29 H 0.178 0.822 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.537 -14.811 2.589 18.360 hybrid contribution 0.614 1.222 -0.616 1.499 sum 11.151 -13.590 1.973 17.689 Atomic orbital electron populations 1.69969 1.06108 1.27052 1.50607 1.24945 0.94964 0.99427 0.95154 0.86296 0.79991 0.82649 0.77637 1.19524 1.20850 1.20807 1.21089 0.94019 0.89400 1.50732 0.91599 1.20188 0.88715 0.83464 0.95412 1.87783 1.35810 1.13142 1.95240 1.22306 0.94537 0.85242 0.99608 1.21993 0.95721 0.98106 0.90260 1.60250 1.24976 1.08370 1.35387 1.22477 0.92667 0.98593 0.94448 0.88537 1.23251 1.01215 0.96106 0.99581 1.22169 0.88551 1.00776 1.04207 0.87390 1.21755 0.93175 0.98185 1.00967 1.22976 0.96932 0.99787 1.01704 1.22977 1.03947 1.03954 0.90742 0.92699 0.97788 0.97601 0.94038 0.93524 0.94609 0.90571 0.82158 0.89158 0.88313 0.87900 0.88603 0.89007 0.89051 0.88587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.51 -15.21 9.43 -34.44 -0.32 -15.53 16 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.20 5.44 5.69 36.01 0.20 5.64 16 10 O -0.40 -9.61 9.85 -35.23 -0.35 -9.96 16 11 C 0.06 1.15 6.28 37.16 0.23 1.39 16 12 C 0.07 1.06 5.96 -3.82 -0.02 1.03 16 13 N -0.66 -10.12 6.75 -106.72 -0.72 -10.84 16 14 C 0.03 0.37 5.90 -67.71 -0.40 -0.03 16 15 H 0.10 1.17 7.90 -51.93 -0.41 0.76 16 16 C -0.16 -1.83 10.18 -26.73 -0.27 -2.10 16 17 C -0.14 -1.59 5.67 -90.61 -0.51 -2.10 16 18 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 19 C -0.12 -1.23 5.87 -90.62 -0.53 -1.77 16 20 C -0.18 -1.72 10.25 -26.73 -0.27 -1.99 16 21 C -0.18 -1.80 10.18 -26.73 -0.27 -2.07 16 22 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 23 H 0.00 0.12 8.14 -51.93 -0.42 -0.30 16 24 H 0.01 0.18 8.14 -51.92 -0.42 -0.25 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.36 6.09 8.24 -39.29 -0.32 5.77 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 307.85 15.07 4.64 4.64 Total: -1.00 -30.36 307.85 -9.18 -39.54 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -6.20 Total: 2.04 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -2.27 Total: -16.00 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.02 Total: -37.15 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -0.35 Total: -9.96 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.36 -9.18 -39.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716579136.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.451 kcal (2) G-P(sol) polarization free energy of solvation -30.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds