Wall clock time and date at job start Mon Mar 30 2020 20:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86793 * 119.99939 * 2 1 4 4 H 1.48501 * 109.47134 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47345 * 300.00305 * 3 2 1 6 6 H 1.48504 * 109.47445 * 60.00032 * 3 2 1 7 7 C 1.37878 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00348 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00126 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.42895 * 114.00106 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47194 * 179.97438 * 11 10 9 13 13 N 1.46909 * 109.47316 * 64.99763 * 12 11 10 14 14 C 1.46894 * 110.99809 * 180.02562 * 13 12 11 15 15 H 1.08993 * 115.55464 * 9.33349 * 14 13 12 16 16 C 1.53004 * 117.49354 * 223.61915 * 14 13 12 17 17 C 1.53002 * 60.00020 * 252.51541 * 16 14 13 18 18 H 1.08997 * 117.51564 * 107.48586 * 17 16 14 19 19 C 1.53006 * 117.49773 * 252.51113 * 17 16 14 20 20 C 1.53001 * 117.49866 * 197.24396 * 19 17 16 21 21 C 1.53000 * 117.49497 * 128.61987 * 19 17 16 22 22 H 0.96998 * 120.00728 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46841 * 60.00069 * 9 7 2 24 24 H 1.09007 * 109.46692 * 300.00260 * 9 7 2 25 25 H 1.08997 * 109.47674 * 59.99896 * 11 10 9 26 26 H 1.09000 * 109.46909 * 299.99491 * 11 10 9 27 27 H 1.09003 * 109.47055 * 304.99812 * 12 11 10 28 28 H 1.08999 * 109.47185 * 184.99623 * 12 11 10 29 29 H 1.00903 * 110.99460 * 303.95618 * 13 12 11 30 30 H 1.08999 * 117.49432 * 145.02872 * 16 14 13 31 31 H 1.08995 * 117.50018 * 0.02562 * 16 14 13 32 32 H 1.08996 * 115.55031 * 342.95882 * 19 17 16 33 33 H 1.08996 * 117.49555 * 359.97438 * 20 19 17 34 34 H 1.08995 * 117.49577 * 145.02406 * 20 19 17 35 35 H 1.08998 * 117.49694 * 214.97781 * 21 19 17 36 36 H 1.08999 * 117.50120 * 0.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5651 -4.8754 -0.0011 12 6 2.6481 -5.9562 -0.0017 13 7 3.4083 -5.8884 1.2535 14 6 4.4597 -6.9136 1.2881 15 1 4.6271 -7.4473 0.3526 16 6 4.6409 -7.6960 2.5905 17 6 5.6763 -6.6480 2.1773 18 1 5.6965 -5.7125 2.7362 19 6 7.0344 -7.1525 1.6854 20 6 8.1917 -6.1520 1.6575 21 6 7.5466 -6.6124 0.3486 22 1 -0.4851 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 0.9452 -4.9823 -0.8913 26 1 0.9447 -4.9827 0.8887 27 1 3.3215 -5.7952 -0.8435 28 1 2.1821 -6.9374 -0.0917 29 1 3.7969 -4.9675 1.3916 30 1 4.9273 -8.7447 2.5119 31 1 3.9796 -7.4502 3.4214 32 1 7.2693 -8.1876 1.9332 33 1 7.9854 -5.1345 1.9891 34 1 9.1883 -6.5289 1.8871 35 1 8.1189 -7.2921 -0.2827 36 1 6.9163 -5.8975 -0.1801 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716579136.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:44:49 Heat of formation + Delta-G solvation = -27.246281 kcal Electronic energy + Delta-G solvation = -14980.979613 eV Core-core repulsion = 12465.540397 eV Total energy + Delta-G solvation = -2515.439216 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.79448 -38.71256 -36.85391 -35.07000 -34.08730 -30.02474 -28.36239 -24.63798 -24.54648 -23.31089 -23.00772 -22.03699 -20.78962 -18.65445 -17.57961 -17.11695 -16.71438 -16.55950 -16.24892 -15.83716 -15.15989 -14.93846 -14.45114 -13.85208 -13.50148 -13.31777 -12.94183 -12.75377 -12.63701 -12.49292 -12.38117 -12.27995 -12.03790 -11.80630 -11.64403 -11.28323 -10.97241 -10.89896 -10.55163 -10.25019 -9.20375 -8.33603 -6.46189 1.39182 1.40622 1.55148 2.33494 2.65325 2.92876 3.00380 3.19895 3.25359 3.71336 3.93379 4.07532 4.16282 4.19557 4.25915 4.39187 4.42923 4.53358 4.56785 4.73892 4.78810 4.79751 4.88443 4.94249 5.01814 5.05259 5.16690 5.26152 5.31090 5.34761 5.53216 5.93958 6.13652 6.31722 6.51114 6.79617 7.25886 8.79087 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.027530 B = 0.005036 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.828888 B = 5558.105509 C = 6274.037240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.984 3.016 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.548 4.548 8 H 0.061 0.939 9 C 0.210 3.790 10 O -0.409 6.409 11 C 0.053 3.947 12 C 0.079 3.921 13 N -0.669 5.669 14 C 0.015 3.985 15 H 0.106 0.894 16 C -0.150 4.150 17 C -0.137 4.137 18 H 0.092 0.908 19 C -0.122 4.122 20 C -0.178 4.178 21 C -0.182 4.182 22 H 0.271 0.729 23 H -0.014 1.014 24 H -0.015 1.015 25 H 0.051 0.949 26 H 0.043 0.957 27 H 0.035 0.965 28 H 0.105 0.895 29 H 0.343 0.657 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.121 0.879 33 H 0.084 0.916 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.377 -15.200 2.273 19.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.585 4.585 8 H 0.080 0.920 9 C 0.135 3.865 10 O -0.329 6.329 11 C -0.024 4.024 12 C -0.050 4.050 13 N -0.299 5.299 14 C -0.095 4.095 15 H 0.124 0.876 16 C -0.188 4.188 17 C -0.156 4.156 18 H 0.111 0.889 19 C -0.140 4.140 20 C -0.214 4.214 21 C -0.219 4.219 22 H 0.080 0.920 23 H 0.004 0.996 24 H 0.002 0.998 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.123 0.877 29 H 0.162 0.838 30 H 0.132 0.868 31 H 0.109 0.891 32 H 0.139 0.861 33 H 0.103 0.897 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 11.944 -15.434 2.605 19.689 hybrid contribution 0.138 1.325 -0.606 1.464 sum 12.082 -14.109 1.998 18.683 Atomic orbital electron populations 1.70073 1.07789 1.28629 1.50504 1.25961 0.95947 1.03401 0.93874 0.85130 0.78621 0.77298 0.78310 1.18856 1.19594 1.19632 1.21406 0.94053 0.90823 1.52243 0.92048 1.19813 0.88594 0.84629 0.93441 1.87750 1.35578 1.14376 1.95225 1.22617 0.96080 0.83823 0.99876 1.21947 0.94813 0.97838 0.90432 1.60298 1.26181 1.08198 1.35262 1.22559 0.92801 0.98540 0.95600 0.87621 1.23294 1.00315 0.97126 0.98066 1.22154 0.89337 1.00527 1.03582 0.88946 1.21792 0.92284 0.99039 1.00856 1.23046 0.97761 0.99308 1.01327 1.22985 1.04012 1.03982 0.90938 0.92009 0.99597 0.99756 0.93064 0.93898 0.94652 0.87658 0.83825 0.86836 0.89137 0.86127 0.89708 0.87168 0.87383 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.49 13.29 21.45 0.28 -56.20 16 2 C 0.01 0.39 5.46 84.66 0.46 0.85 16 3 Si 0.98 44.70 29.54 68.60 2.03 46.72 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.55 -33.01 9.43 25.60 0.24 -32.77 16 8 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 9 C 0.21 12.04 5.69 71.24 0.41 12.45 16 10 O -0.41 -20.19 9.85 -148.98 -1.47 -21.66 16 11 C 0.05 2.03 6.28 71.98 0.45 2.48 16 12 C 0.08 2.37 5.96 86.30 0.51 2.88 16 13 N -0.67 -20.40 6.75 -491.55 -3.32 -23.72 16 14 C 0.02 0.37 5.90 44.92 0.27 0.63 16 15 H 0.11 2.37 7.90 -2.39 -0.02 2.35 16 16 C -0.15 -3.08 10.18 30.60 0.31 -2.77 16 17 C -0.14 -3.02 5.67 -10.79 -0.06 -3.09 16 18 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 19 C -0.12 -2.22 5.87 -10.79 -0.06 -2.28 16 20 C -0.18 -3.18 10.25 30.60 0.31 -2.87 16 21 C -0.18 -3.40 10.18 30.60 0.31 -3.09 16 22 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 23 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 24 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16 25 H 0.05 1.84 8.14 -2.39 -0.02 1.83 16 26 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.34 11.97 8.24 -89.69 -0.74 11.23 16 30 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -65.09 307.85 0.98 -64.12 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.30 Total: 18.31 kcal Atomic # 6 Polarization: -30.73 SS G_CDS: 3.15 Total: -27.57 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -3.03 Total: -79.92 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -1.47 Total: -21.66 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -65.09 0.98 -64.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716579136.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.872 kcal (2) G-P(sol) polarization free energy of solvation -65.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds