Wall clock time and date at job start Mon Mar 30 2020 20:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30274 * 126.28477 * 2 1 4 4 N 1.28665 * 109.38559 * 179.97438 * 3 2 1 5 5 C 1.30273 * 109.37995 * 359.97438 * 4 3 2 6 6 C 1.50700 * 126.28533 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.46994 * 90.02422 * 6 5 4 8 8 C 1.46900 * 110.99503 * 180.02562 * 7 6 5 9 9 H 1.08995 * 109.47586 * 35.00637 * 8 7 6 10 10 C 1.53005 * 109.47181 * 274.99918 * 8 7 6 11 11 C 1.53002 * 109.46648 * 155.00453 * 8 7 6 12 12 C 1.50706 * 109.47153 * 294.99361 * 11 8 7 13 13 H 1.07998 * 119.99503 * 0.02562 * 12 11 8 14 14 C 1.37871 * 120.00434 * 180.02562 * 12 11 8 15 15 N 1.31516 * 119.99826 * 359.72891 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47364 * 179.72558 * 16 14 12 18 18 H 1.48508 * 109.46883 * 299.72681 * 16 14 12 19 19 H 1.48497 * 109.46870 * 59.72491 * 16 14 12 20 20 O 1.34369 * 126.28122 * 180.28371 * 2 1 3 21 21 H 1.09003 * 109.46888 * 89.97880 * 1 2 3 22 22 H 1.08998 * 109.47417 * 209.97487 * 1 2 3 23 23 H 1.09000 * 109.47082 * 329.97662 * 1 2 3 24 24 H 1.09000 * 109.46503 * 330.02931 * 6 5 4 25 25 H 1.08999 * 109.47424 * 210.02857 * 6 5 4 26 26 H 1.00898 * 110.99914 * 56.05252 * 7 6 5 27 27 H 1.08996 * 109.46870 * 300.00309 * 10 8 7 28 28 H 1.09001 * 109.46894 * 60.00465 * 10 8 7 29 29 H 1.09002 * 109.46592 * 180.02562 * 10 8 7 30 30 H 1.09004 * 109.47178 * 175.00151 * 11 8 7 31 31 H 1.08993 * 109.47411 * 54.99833 * 11 8 7 32 32 H 0.97000 * 120.00236 * 0.27947 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6761 0.0005 5 6 3.5654 -0.6254 0.0015 6 6 4.8176 -1.4638 0.0018 7 7 5.2245 -1.7358 1.3869 8 6 6.4450 -2.5522 1.4263 9 1 7.0935 -2.2769 0.5946 10 6 6.0726 -4.0321 1.3145 11 6 7.1786 -2.3093 2.7469 12 6 7.6531 -0.8800 2.8024 13 1 7.4513 -0.2117 1.9784 14 6 8.3449 -0.4256 3.9050 15 7 8.5860 -1.2380 4.9108 16 14 8.9325 1.3462 3.9742 17 1 9.6393 1.5836 5.2584 18 1 9.8600 1.6045 2.8435 19 1 7.7653 2.2589 3.8754 20 8 2.3021 -1.0832 -0.0054 21 1 -0.3633 0.0004 -1.0277 22 1 -0.3634 -0.8902 0.5134 23 1 -0.3633 0.8898 0.5142 24 1 5.6147 -0.9265 -0.5122 25 1 4.6245 -2.4057 -0.5118 26 1 4.4778 -2.1760 1.9033 27 1 5.4243 -4.3073 2.1463 28 1 5.5500 -4.2051 0.3738 29 1 6.9783 -4.6378 1.3442 30 1 8.0355 -2.9795 2.8151 31 1 6.5011 -2.4999 3.5792 32 1 8.2807 -2.1580 4.8751 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719006547.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:44:56 Heat of formation + Delta-G solvation = -2.254885 kcal Electronic energy + Delta-G solvation = -15205.936218 eV Core-core repulsion = 12588.040368 eV Total energy + Delta-G solvation = -2617.895851 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.28619 -38.66117 -37.25736 -35.42836 -34.14533 -32.26143 -29.35454 -28.75474 -26.67349 -24.94498 -23.75848 -23.21078 -21.78703 -18.95012 -18.56010 -18.14183 -16.82641 -16.33632 -15.89237 -15.61495 -15.44751 -14.87083 -14.39308 -14.10716 -13.74759 -13.55038 -13.46762 -13.29683 -13.03573 -12.99757 -12.93374 -12.52092 -12.21328 -11.99317 -11.94044 -11.49998 -10.63749 -10.59023 -10.45878 -9.29827 -8.55410 -6.20659 0.06805 1.19741 1.29505 1.53160 1.61807 1.80345 2.61310 2.79419 3.21036 3.34026 3.41620 3.81633 4.06148 4.14036 4.32634 4.36525 4.42530 4.50626 4.54562 4.56532 4.72223 4.84201 5.04325 5.08884 5.14198 5.22095 5.42418 6.03245 6.16999 6.34968 6.39120 6.75674 7.24175 7.55329 8.85963 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.027069 B = 0.006773 C = 0.005761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.132235 B = 4132.835952 C = 4858.698322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.168 3.832 3 N -0.334 5.334 4 N -0.311 5.311 5 C 0.173 3.827 6 C 0.163 3.837 7 N -0.682 5.682 8 C 0.109 3.891 9 H 0.074 0.926 10 C -0.172 4.172 11 C 0.020 3.980 12 C -0.577 4.577 13 H 0.047 0.953 14 C -0.046 4.046 15 N -0.949 5.949 16 Si 1.110 2.890 17 H -0.285 1.285 18 H -0.268 1.268 19 H -0.283 1.283 20 O -0.229 6.229 21 H 0.124 0.876 22 H 0.115 0.885 23 H 0.117 0.883 24 H 0.114 0.886 25 H 0.093 0.907 26 H 0.340 0.660 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.063 0.937 30 H -0.004 1.004 31 H -0.014 1.014 32 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.889 -3.627 -12.600 20.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.043 4.043 3 N -0.181 5.181 4 N -0.157 5.157 5 C -0.040 4.040 6 C 0.033 3.967 7 N -0.315 5.315 8 C 0.000 4.000 9 H 0.092 0.908 10 C -0.231 4.231 11 C -0.017 4.017 12 C -0.616 4.616 13 H 0.065 0.935 14 C -0.242 4.242 15 N -0.589 5.589 16 Si 0.933 3.067 17 H -0.210 1.210 18 H -0.193 1.193 19 H -0.209 1.209 20 O -0.109 6.109 21 H 0.142 0.858 22 H 0.133 0.867 23 H 0.135 0.865 24 H 0.132 0.868 25 H 0.111 0.889 26 H 0.158 0.842 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.015 0.985 31 H 0.004 0.996 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.372 -0.686 -11.624 18.497 hybrid contribution -1.269 -3.082 -0.749 3.416 sum -15.641 -3.768 -12.373 20.296 Atomic orbital electron populations 1.20739 0.76014 1.07302 1.07160 1.29200 0.99575 0.78786 0.96726 1.74338 0.96270 1.27452 1.20007 1.74360 1.12933 1.10867 1.17510 1.28180 0.85584 0.91379 0.98888 1.20446 0.86796 0.97024 0.92439 1.60297 1.07131 1.53049 1.11000 1.21385 0.89887 0.90240 0.98509 0.90815 1.22448 1.02260 0.96230 1.02125 1.19183 0.93486 0.95743 0.93331 1.22311 1.36243 0.97640 1.05377 0.93515 1.27128 0.95548 1.08834 0.92651 1.70924 1.47654 1.06976 1.33341 0.83002 0.76486 0.70787 0.76405 1.21042 1.19344 1.20881 1.84781 1.17346 1.38715 1.70029 0.85799 0.86685 0.86477 0.86803 0.88914 0.84157 0.92831 0.90599 0.91833 0.98544 0.99592 0.93708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.59 10.51 71.24 0.75 0.16 16 2 C 0.17 4.17 8.48 88.34 0.75 4.92 16 3 N -0.33 -11.25 12.22 -165.50 -2.02 -13.27 16 4 N -0.31 -11.76 12.22 -165.49 -2.02 -13.78 16 5 C 0.17 5.49 7.99 88.34 0.71 6.20 16 6 C 0.16 4.67 6.11 85.56 0.52 5.19 16 7 N -0.68 -24.55 5.95 -495.57 -2.95 -27.50 16 8 C 0.11 4.07 2.53 44.92 0.11 4.19 16 9 H 0.07 2.74 7.80 -2.39 -0.02 2.72 16 10 C -0.17 -4.87 9.16 71.98 0.66 -4.21 16 11 C 0.02 1.02 3.97 29.85 0.12 1.13 16 12 C -0.58 -33.55 8.84 25.60 0.23 -33.32 16 13 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 14 C -0.05 -2.76 5.46 84.65 0.46 -2.29 16 15 N -0.95 -60.66 13.65 21.45 0.29 -60.36 16 16 Si 1.11 54.03 29.90 68.60 2.05 56.08 16 17 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 19 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 20 O -0.23 -6.20 10.87 -3.77 -0.04 -6.24 16 21 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 22 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 23 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.11 3.34 8.05 -2.39 -0.02 3.32 16 25 H 0.09 1.96 7.44 -2.39 -0.02 1.94 16 26 H 0.34 11.49 8.46 -89.70 -0.76 10.73 16 27 H 0.05 1.52 8.13 -2.39 -0.02 1.50 16 28 H 0.08 1.66 7.45 -2.39 -0.02 1.64 16 29 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.00 -0.19 8.01 -2.39 -0.02 -0.21 16 31 H -0.01 -0.78 8.00 -2.39 -0.02 -0.80 16 32 H 0.25 16.23 7.22 -92.71 -0.67 15.56 16 Total: -1.00 -76.91 280.08 0.07 -76.83 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 0.46 Total: 6.28 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: 4.31 Total: -18.03 kcal Atomic # 7 Polarization: -108.22 SS G_CDS: -6.70 Total: -114.92 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -0.04 Total: -6.24 kcal Atomic # 14 Polarization: 54.03 SS G_CDS: 2.05 Total: 56.08 kcal Total: -76.91 0.07 -76.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719006547.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.577 kcal (2) G-P(sol) polarization free energy of solvation -76.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds