Wall clock time and date at job start Mon Mar 30 2020 20:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 N 1.46495 * 109.47194 * 120.00052 * 2 1 3 13 13 C 1.34776 * 120.00388 * 275.00617 * 12 2 1 14 14 O 1.21737 * 119.99656 * 359.97438 * 13 12 2 15 15 C 1.41793 * 120.00031 * 180.02562 * 13 12 2 16 16 C 1.33465 * 118.78488 * 179.72933 * 15 13 12 17 17 O 1.34344 * 123.07833 * 180.11318 * 16 15 13 18 18 C 1.45357 * 117.54869 * 344.21594 * 17 16 15 19 19 C 1.53480 * 108.26156 * 47.22820 * 18 17 16 20 20 C 1.50414 * 118.79078 * 359.97438 * 15 13 12 21 21 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 22 22 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 23 23 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 24 24 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 25 25 H 0.97008 * 120.00075 * 94.99858 * 12 2 1 26 26 H 1.07993 * 118.46022 * 0.39015 * 16 15 13 27 27 H 1.08995 * 109.70457 * 287.53920 * 18 17 16 28 28 H 1.08999 * 109.74266 * 166.93481 * 18 17 16 29 29 H 1.08996 * 109.71047 * 177.60778 * 19 18 17 30 30 H 1.08998 * 109.70747 * 56.98587 * 19 18 17 31 31 H 1.08998 * 109.45385 * 282.36244 * 20 15 13 32 32 H 1.09002 * 109.45334 * 42.32210 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8579 1.1629 2.4118 15 6 2.6202 -0.6867 3.5147 16 6 2.7434 0.0037 4.6502 17 8 3.1847 -0.5418 5.7958 18 6 3.2052 -1.9925 5.8855 19 6 3.8493 -2.5444 4.6064 20 6 2.9701 -2.1463 3.4163 21 1 -0.3633 0.5137 0.8899 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 1.9111 -0.5221 -4.4375 25 1 2.2491 -1.6318 1.1526 26 1 2.4715 1.0488 4.6491 27 1 2.1866 -2.3695 5.9762 28 1 3.7894 -2.2995 6.7530 29 1 3.9153 -3.6306 4.6672 30 1 4.8464 -2.1212 4.4849 31 1 2.0561 -2.7401 3.4250 32 1 3.5122 -2.3279 2.4882 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730773752.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:45:17 Heat of formation + Delta-G solvation = -63.499332 kcal Electronic energy + Delta-G solvation = -15599.859014 eV Core-core repulsion = 12947.014654 eV Total energy + Delta-G solvation = -2652.844360 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.37984 -38.66405 -34.99153 -34.19684 -32.26649 -31.54379 -29.61155 -25.75574 -25.17739 -24.21997 -21.68781 -20.03050 -18.74928 -17.89686 -16.56279 -16.15717 -15.58328 -15.14323 -14.86506 -14.29348 -13.96646 -13.82811 -13.28677 -12.95321 -12.79414 -12.59146 -12.15497 -11.72067 -11.33903 -11.21530 -11.03239 -10.77293 -10.69826 -10.14624 -9.66830 -9.18329 -9.11885 -8.72141 -8.43577 -7.99028 -6.18029 -4.20017 1.66797 3.19841 3.26046 3.37874 3.43598 3.93554 4.24650 4.35090 4.58555 4.64069 4.82261 5.09898 5.17253 5.19963 5.33823 5.52166 5.62638 5.86756 5.96667 6.14398 6.31542 6.38078 6.43911 6.61624 6.91324 7.19987 7.34431 7.39144 7.58875 8.21966 8.61269 8.79679 9.05086 9.43762 10.94270 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.051648 B = 0.006669 C = 0.006157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.003642 B = 4197.715370 C = 4546.435262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.235 3.765 3 H 0.048 0.952 4 C -0.533 4.533 5 H 0.079 0.921 6 C 0.077 3.923 7 N -0.894 5.894 8 Si 0.886 3.114 9 H -0.277 1.277 10 H -0.261 1.261 11 H -0.295 1.295 12 N -0.699 5.699 13 C 0.557 3.443 14 O -0.576 6.576 15 C -0.301 4.301 16 C 0.139 3.861 17 O -0.316 6.316 18 C 0.053 3.947 19 C -0.156 4.156 20 C -0.077 4.077 21 H 0.036 0.964 22 H 0.046 0.954 23 H 0.051 0.949 24 H 0.267 0.733 25 H 0.394 0.606 26 H 0.179 0.821 27 H 0.071 0.929 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.205 -4.097 16.332 16.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.132 3.868 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.097 0.903 6 C -0.126 4.126 7 N -0.531 5.531 8 Si 0.716 3.284 9 H -0.204 1.204 10 H -0.186 1.186 11 H -0.222 1.222 12 N -0.347 5.347 13 C 0.347 3.653 14 O -0.459 6.459 15 C -0.306 4.306 16 C 0.072 3.928 17 O -0.227 6.227 18 C -0.021 4.021 19 C -0.194 4.194 20 C -0.114 4.114 21 H 0.055 0.945 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.228 0.772 26 H 0.196 0.804 27 H 0.089 0.911 28 H 0.123 0.877 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.080 -3.209 16.311 16.659 hybrid contribution -0.562 0.014 -0.591 0.815 sum 0.518 -3.194 15.720 16.050 Atomic orbital electron populations 1.22437 0.99413 1.00722 0.99223 1.19077 0.90076 0.94740 0.82949 0.93380 1.21058 1.33074 1.14368 0.88625 0.90315 1.24835 0.95535 0.96717 0.95517 1.69873 1.45008 1.40237 0.98016 0.86860 0.80481 0.83645 0.77414 1.20351 1.18613 1.22197 1.46115 1.65052 1.13679 1.09854 1.16613 0.78414 0.86641 0.83636 1.90745 1.53427 1.15953 1.85798 1.20234 1.16423 0.98248 0.95659 1.22902 0.88186 0.98261 0.83450 1.86232 1.78671 1.23114 1.34717 1.23499 1.01718 0.77836 0.99062 1.22187 1.00221 1.02018 0.94934 1.20304 0.99842 0.92154 0.99079 0.94537 0.93563 0.92942 0.92340 0.77214 0.80433 0.91068 0.87707 0.89701 0.90381 0.90708 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 8.96 37.16 0.33 -3.36 16 2 C 0.24 5.83 2.15 -69.08 -0.15 5.68 16 3 H 0.05 1.31 6.63 -51.93 -0.34 0.97 16 4 C -0.53 -14.75 9.31 -34.44 -0.32 -15.07 16 5 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 6 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 7 N -0.89 -26.82 13.96 55.43 0.77 -26.04 16 8 Si 0.89 22.20 24.37 -169.99 -4.14 18.06 16 9 H -0.28 -6.70 6.88 56.52 0.39 -6.31 16 10 H -0.26 -6.54 6.52 56.52 0.37 -6.17 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 N -0.70 -14.64 4.98 -57.78 -0.29 -14.93 16 13 C 0.56 11.22 7.50 -14.90 -0.11 11.11 16 14 O -0.58 -13.50 15.58 5.16 0.08 -13.42 16 15 C -0.30 -4.67 5.70 -105.07 -0.60 -5.27 16 16 C 0.14 1.97 10.47 29.06 0.30 2.27 16 17 O -0.32 -3.85 10.47 -14.87 -0.16 -4.00 16 18 C 0.05 0.47 7.15 37.41 0.27 0.74 16 19 C -0.16 -1.44 6.23 -26.37 -0.16 -1.60 16 20 C -0.08 -0.93 5.08 -27.91 -0.14 -1.07 16 21 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.05 1.09 3.28 -51.93 -0.17 0.92 16 23 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 24 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.39 7.31 6.65 -40.82 -0.27 7.04 16 26 H 0.18 2.55 7.21 -52.49 -0.38 2.17 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.06 7.15 -51.93 -0.37 0.68 16 LS Contribution 262.06 15.07 3.95 3.95 Total: -1.00 -32.48 262.06 -4.56 -37.04 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -4.09 Total: 3.81 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -0.68 Total: -4.46 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 0.49 Total: -40.97 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.08 Total: -17.42 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.14 Total: 18.06 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.48 -4.56 -37.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730773752.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.461 kcal (2) G-P(sol) polarization free energy of solvation -32.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds