Wall clock time and date at job start Mon Mar 30 2020 20:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21737 * 120.00555 * 0.02562 * 13 12 2 15 15 C 1.41800 * 119.99767 * 180.02562 * 13 12 2 16 16 C 1.33455 * 118.78530 * 180.02562 * 15 13 12 17 17 O 1.34353 * 123.07972 * 180.41631 * 16 15 13 18 18 C 1.45357 * 117.47980 * 343.64630 * 17 16 15 19 19 C 1.53486 * 108.26271 * 47.47841 * 18 17 16 20 20 C 1.50416 * 118.78897 * 359.73540 * 15 13 12 21 21 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 22 22 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 26 26 H 1.08000 * 118.46047 * 0.38839 * 16 15 13 27 27 H 1.09000 * 109.70241 * 167.17244 * 18 17 16 28 28 H 1.09004 * 109.70704 * 287.74232 * 18 17 16 29 29 H 1.08994 * 109.70379 * 56.98817 * 19 18 17 30 30 H 1.09000 * 109.69923 * 177.60677 * 19 18 17 31 31 H 1.09004 * 109.45146 * 282.38183 * 20 15 13 32 32 H 1.08999 * 109.45981 * 42.32042 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8579 1.1633 -2.4117 15 6 2.6192 -0.6865 -3.5151 16 6 2.7377 0.0028 -4.6517 17 8 3.1679 -0.5454 -5.8003 18 6 3.8516 -1.8256 -5.7178 19 6 3.0234 -2.7562 -4.8212 20 6 2.9742 -2.1448 -3.4155 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 0.7089 1.1611 3.4845 25 1 2.2490 -1.6317 -1.1527 26 1 2.4751 1.0504 -4.6480 27 1 3.9415 -2.2590 -6.7139 28 1 4.8431 -1.6857 -5.2871 29 1 2.0138 -2.8491 -5.2211 30 1 3.4939 -3.7384 -4.7773 31 1 3.9473 -2.2495 -2.9357 32 1 2.2200 -2.6625 -2.8228 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730773753.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:45:19 Heat of formation + Delta-G solvation = -71.555430 kcal Electronic energy + Delta-G solvation = -15539.676887 eV Core-core repulsion = 12886.483188 eV Total energy + Delta-G solvation = -2653.193699 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.28160 -38.48795 -34.76469 -34.11668 -32.21642 -31.42075 -28.71944 -25.68396 -25.21681 -24.09100 -21.57560 -19.92216 -18.60128 -17.83070 -16.46688 -15.84050 -15.40005 -15.02045 -14.66511 -14.29887 -13.94386 -13.65970 -13.20540 -12.86603 -12.56877 -12.24563 -11.63452 -11.27888 -11.05660 -10.99926 -10.92997 -10.68055 -10.63128 -10.28079 -10.19024 -9.01844 -8.97083 -8.50643 -8.33276 -7.75483 -6.08341 -4.17441 1.76967 3.27074 3.27304 3.32442 3.33805 4.09320 4.28169 4.48884 4.66403 4.69989 4.87425 5.15038 5.23625 5.25749 5.38540 5.55848 5.69512 5.96410 6.00634 6.20150 6.41694 6.88781 7.04000 7.21690 7.34885 7.55717 7.64742 7.77010 7.98466 8.20654 8.76648 8.84233 9.24490 9.50546 10.97684 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.046400 B = 0.006339 C = 0.005848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.297785 B = 4416.046233 C = 4787.170942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.533 4.533 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.277 1.277 12 N -0.706 5.706 13 C 0.554 3.446 14 O -0.574 6.574 15 C -0.299 4.299 16 C 0.134 3.866 17 O -0.317 6.317 18 C 0.053 3.947 19 C -0.156 4.156 20 C -0.075 4.075 21 H 0.015 0.985 22 H 0.025 0.975 23 H 0.089 0.911 24 H 0.264 0.736 25 H 0.387 0.613 26 H 0.179 0.821 27 H 0.104 0.896 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.676 -7.744 -13.033 15.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.354 5.354 13 C 0.343 3.657 14 O -0.458 6.458 15 C -0.303 4.303 16 C 0.067 3.933 17 O -0.228 6.228 18 C -0.022 4.022 19 C -0.193 4.193 20 C -0.113 4.113 21 H 0.034 0.966 22 H 0.044 0.956 23 H 0.108 0.892 24 H 0.074 0.926 25 H 0.220 0.780 26 H 0.196 0.804 27 H 0.122 0.878 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.366 -6.731 -13.080 15.345 hybrid contribution 0.434 -1.132 1.189 1.698 sum 4.801 -7.864 -11.891 15.043 Atomic orbital electron populations 1.22067 0.98557 0.98982 1.00843 1.18705 0.90981 0.94026 0.80135 0.93398 1.21195 1.32387 1.13152 0.90443 0.92255 1.24892 0.94855 0.94969 0.99011 1.69901 1.35882 1.22437 1.23898 0.86514 0.79133 0.79576 0.81884 1.21121 1.20202 1.20225 1.46448 1.64931 1.13408 1.10606 1.16596 0.78691 0.86747 0.83675 1.90749 1.53348 1.15979 1.85682 1.20314 1.16024 0.97385 0.96601 1.22899 0.89260 0.97486 0.83610 1.86239 1.70209 1.36388 1.29987 1.23487 0.95083 0.82022 1.01559 1.22210 1.01621 0.99273 0.96211 1.20319 1.02412 0.91818 0.96719 0.96635 0.95613 0.89234 0.92563 0.77998 0.80436 0.87802 0.91093 0.90452 0.89835 0.90656 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.26 37.16 0.34 -3.42 16 2 C 0.26 6.97 2.56 -69.09 -0.18 6.79 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 4 C -0.53 -14.48 8.73 -34.44 -0.30 -14.78 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -25.35 11.32 55.43 0.63 -24.72 16 8 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 9 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 12 N -0.71 -15.54 4.98 -57.79 -0.29 -15.83 16 13 C 0.55 11.83 7.50 -14.90 -0.11 11.72 16 14 O -0.57 -14.38 15.58 5.16 0.08 -14.30 16 15 C -0.30 -4.89 5.69 -105.07 -0.60 -5.48 16 16 C 0.13 2.01 10.46 29.06 0.30 2.32 16 17 O -0.32 -4.06 10.48 -14.90 -0.16 -4.21 16 18 C 0.05 0.49 7.15 37.41 0.27 0.76 16 19 C -0.16 -1.48 6.24 -26.29 -0.16 -1.65 16 20 C -0.08 -0.95 5.10 -27.83 -0.14 -1.09 16 21 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 22 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.39 7.42 6.64 -40.82 -0.27 7.15 16 26 H 0.18 2.73 7.21 -52.49 -0.38 2.35 16 27 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.03 7.14 -51.93 -0.37 0.66 16 LS Contribution 268.88 15.07 4.05 4.05 Total: -1.00 -31.71 268.88 -5.61 -37.31 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -4.23 Total: 4.96 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -0.67 Total: -3.13 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.34 Total: -40.55 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.08 Total: -18.51 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.71 -5.61 -37.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730773753.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.244 kcal (2) G-P(sol) polarization free energy of solvation -31.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds