Wall clock time and date at job start Mon Mar 30 2020 20:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 N 1.40103 * 120.00115 * 270.00223 * 12 2 1 14 14 C 1.30262 * 119.99862 * 179.97438 * 13 12 2 15 15 C 1.51454 * 126.61042 * 180.02562 * 14 13 12 16 16 C 1.53798 * 104.13147 * 180.02562 * 15 14 13 17 17 N 1.46432 * 106.21846 * 359.97438 * 16 15 14 18 18 C 1.46500 * 124.40065 * 180.02562 * 17 16 15 19 19 C 1.33836 * 111.19506 * 359.70497 * 17 16 15 20 20 O 1.21716 * 124.16105 * 180.31374 * 19 17 16 21 21 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 22 22 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 23 23 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 0.96998 * 120.00079 * 89.99883 * 12 2 1 26 26 H 1.08996 * 110.49932 * 298.66212 * 15 14 13 27 27 H 1.08996 * 110.49723 * 61.20103 * 15 14 13 28 28 H 1.08999 * 110.10378 * 119.19011 * 16 15 14 29 29 H 1.09003 * 110.09936 * 240.74664 * 16 15 14 30 30 H 1.09003 * 109.47394 * 89.99730 * 18 17 16 31 31 H 1.09001 * 109.47101 * 209.99611 * 18 17 16 32 32 H 1.08996 * 109.47295 * 329.99713 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 7 2.2518 0.0300 2.3749 14 6 2.6855 -0.5841 3.4386 15 6 2.9860 0.0428 4.7842 16 6 3.4599 -1.1363 5.6504 17 7 3.4068 -2.3216 4.7922 18 6 3.7770 -3.6722 5.2224 19 6 2.9696 -2.0118 3.5658 20 8 2.8295 -2.8193 2.6659 21 1 -0.3633 0.5138 0.8899 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.9028 -0.5285 -4.4375 25 1 2.1800 -1.6467 1.1723 26 1 3.7755 0.7884 4.6901 27 1 2.0866 0.4918 5.2054 28 1 4.4813 -0.9648 5.9903 29 1 2.7969 -1.2626 6.5063 30 1 2.8998 -4.1784 5.6255 31 1 4.1601 -4.2329 4.3698 32 1 4.5464 -3.6103 5.9919 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761828539.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:45:21 Heat of formation + Delta-G solvation = 19.895345 kcal Electronic energy + Delta-G solvation = -15426.240905 eV Core-core repulsion = 12809.305560 eV Total energy + Delta-G solvation = -2616.935345 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.122 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.30715 -36.51618 -36.10593 -34.11432 -32.08950 -30.85270 -27.85695 -26.98929 -25.20516 -24.39834 -21.20453 -20.50160 -19.26616 -17.30355 -16.34818 -16.30378 -15.88907 -15.32402 -14.10796 -13.82934 -13.74320 -13.39949 -13.07398 -12.82655 -12.48855 -12.33739 -12.22102 -12.03788 -11.80974 -11.44773 -11.25001 -10.79127 -10.57419 -10.17207 -9.62391 -9.27880 -8.92194 -8.76190 -8.66664 -7.21272 -6.16688 -4.19222 1.80206 3.03654 3.23598 3.33406 3.36076 3.45254 3.53582 4.31967 4.65529 4.74524 4.96934 5.11400 5.16239 5.26601 5.40842 5.47325 5.65611 5.87697 5.95881 6.20501 6.32297 6.44604 6.55485 6.69877 6.89245 7.14632 7.28356 7.51295 7.92085 8.37560 8.43311 8.86047 9.05806 9.41970 10.95912 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.048967 B = 0.006452 C = 0.005964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.675820 B = 4338.949813 C = 4693.618461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.263 3.737 3 H 0.045 0.955 4 C -0.533 4.533 5 H 0.081 0.919 6 C 0.078 3.922 7 N -0.891 5.891 8 Si 0.889 3.111 9 H -0.276 1.276 10 H -0.263 1.263 11 H -0.293 1.293 12 N -0.587 5.587 13 N -0.125 5.125 14 C -0.087 4.087 15 C -0.055 4.055 16 C 0.110 3.890 17 N -0.621 5.621 18 C 0.100 3.900 19 C 0.536 3.464 20 O -0.541 6.541 21 H 0.035 0.965 22 H 0.049 0.951 23 H 0.054 0.946 24 H 0.268 0.732 25 H 0.402 0.598 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.503 0.958 19.081 19.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.159 3.841 3 H 0.063 0.937 4 C -0.572 4.572 5 H 0.099 0.901 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.719 3.281 9 H -0.203 1.203 10 H -0.188 1.188 11 H -0.221 1.221 12 N -0.330 5.330 13 N 0.053 4.947 14 C -0.276 4.276 15 C -0.095 4.095 16 C -0.013 4.013 17 N -0.357 5.357 18 C -0.042 4.042 19 C 0.324 3.676 20 O -0.417 6.417 21 H 0.054 0.946 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.245 0.755 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.154 1.369 17.934 18.023 hybrid contribution -0.329 -0.467 0.010 0.571 sum 0.825 0.902 17.944 17.985 Atomic orbital electron populations 1.22584 0.99491 1.01219 0.99074 1.19061 0.89628 0.94341 0.81107 0.93743 1.21052 1.33217 1.14654 0.88269 0.90102 1.24824 0.95575 0.96818 0.95324 1.69875 1.44884 1.40072 0.98006 0.86833 0.80557 0.83395 0.77354 1.20250 1.18823 1.22083 1.49120 1.68201 1.10394 1.05312 1.74016 1.01131 1.26584 0.92983 1.23479 1.15033 0.92624 0.96449 1.20780 1.02565 0.96657 0.89470 1.21895 1.01726 0.84016 0.93691 1.47562 1.66675 1.08566 1.12881 1.21481 0.99969 0.81903 1.00805 1.19098 0.76863 0.89537 0.82098 1.90751 1.53775 1.55453 1.41716 0.94635 0.93253 0.92656 0.92247 0.75535 0.89033 0.89106 0.90696 0.90785 0.92783 0.90638 0.91159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 9.00 37.16 0.33 -3.45 16 2 C 0.26 6.61 2.82 -69.08 -0.20 6.42 16 3 H 0.04 1.14 7.20 -51.93 -0.37 0.77 16 4 C -0.53 -15.43 9.32 -34.44 -0.32 -15.75 16 5 H 0.08 2.57 8.03 -52.49 -0.42 2.15 16 6 C 0.08 2.26 5.45 -17.82 -0.10 2.17 16 7 N -0.89 -27.28 13.96 55.43 0.77 -26.50 16 8 Si 0.89 21.75 24.37 -169.99 -4.14 17.61 16 9 H -0.28 -6.53 6.87 56.52 0.39 -6.14 16 10 H -0.26 -6.17 6.53 56.52 0.37 -5.80 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 N -0.59 -13.95 6.07 -5.88 -0.04 -13.99 16 13 N -0.12 -2.57 11.60 35.07 0.41 -2.16 16 14 C -0.09 -1.50 7.52 -79.73 -0.60 -2.10 16 15 C -0.06 -0.60 6.98 -27.10 -0.19 -0.79 16 16 C 0.11 0.99 7.45 -3.66 -0.03 0.97 16 17 N -0.62 -8.12 3.31 -183.18 -0.61 -8.72 16 18 C 0.10 1.03 10.94 59.85 0.65 1.68 16 19 C 0.54 9.66 7.76 -13.52 -0.10 9.56 16 20 O -0.54 -12.00 14.96 5.17 0.08 -11.92 16 21 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 23 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 24 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 25 H 0.40 10.02 5.88 -182.60 -1.07 8.95 16 26 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.89 7.90 -51.93 -0.41 0.48 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 267.74 15.07 4.03 4.03 Total: -1.00 -33.70 267.74 -5.05 -38.75 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -5.01 Total: 4.21 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -0.54 Total: -1.30 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: 0.54 Total: -51.38 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.08 Total: -11.92 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.14 Total: 17.61 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -33.70 -5.05 -38.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761828539.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.647 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds