Wall clock time and date at job start Mon Mar 30 2020 20:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46824 * 2 1 4 4 C 1.52995 * 109.47314 * 240.00018 * 2 1 3 5 5 C 1.50696 * 109.47443 * 175.60158 * 4 2 1 6 6 H 1.08004 * 119.99812 * 355.33476 * 5 4 2 7 7 C 1.37881 * 120.00491 * 175.33010 * 5 4 2 8 8 N 1.31505 * 119.99985 * 179.97438 * 7 5 4 9 9 Si 1.86793 * 119.99565 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47661 * 89.99844 * 9 7 5 11 11 H 1.48506 * 109.47123 * 209.99497 * 9 7 5 12 12 H 1.48509 * 109.47481 * 329.99393 * 9 7 5 13 13 N 1.46895 * 109.47339 * 119.99329 * 2 1 3 14 14 C 1.46895 * 111.00382 * 289.05242 * 13 2 1 15 15 C 1.46902 * 110.99819 * 53.00512 * 13 2 1 16 16 C 1.50706 * 109.47172 * 169.99798 * 15 13 2 17 17 N 1.33312 * 126.54777 * 269.68995 * 16 15 13 18 18 N 1.29003 * 107.34818 * 179.83679 * 17 16 15 19 19 N 1.28774 * 108.72719 * 0.42788 * 18 17 16 20 20 H 0.96999 * 125.44816 * 179.72203 * 19 18 17 21 21 N 1.28884 * 109.10707 * 359.73200 * 19 18 17 22 22 H 1.09000 * 109.46951 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47048 * 300.00169 * 1 2 3 24 24 H 1.09002 * 109.47374 * 60.00418 * 1 2 3 25 25 H 1.09006 * 109.46825 * 295.60254 * 4 2 1 26 26 H 1.08997 * 109.47376 * 55.59629 * 4 2 1 27 27 H 0.97005 * 119.99791 * 180.02562 * 8 7 5 28 28 H 1.08998 * 109.47511 * 181.55434 * 14 13 2 29 29 H 1.08998 * 109.47184 * 301.55456 * 14 13 2 30 30 H 1.09004 * 109.47391 * 61.55360 * 14 13 2 31 31 H 1.09002 * 109.47280 * 289.99707 * 15 13 2 32 32 H 1.08998 * 109.47121 * 49.99988 * 15 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5431 -0.6276 -1.3049 6 1 4.0753 -0.0427 -0.5693 7 6 4.2389 -1.2886 -2.2949 8 7 5.5505 -1.2064 -2.3437 9 14 3.3183 -2.2997 -3.5674 10 1 2.9740 -1.4399 -4.7282 11 1 4.1760 -3.4238 -4.0213 12 1 2.0730 -2.8394 -2.9645 13 7 2.0197 -0.6923 1.1995 14 6 1.7732 0.1076 2.4066 15 6 1.4172 -2.0266 1.3200 16 6 2.1169 -2.7973 2.4098 17 7 3.1805 -3.5880 2.2656 18 7 3.4729 -4.0558 3.4318 19 7 2.6282 -3.5932 4.2866 20 1 2.6218 -3.7929 5.2358 21 7 1.7925 -2.8225 3.6792 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.7425 -1.7692 -1.2106 26 1 1.6138 -0.2550 -2.1374 27 1 6.0399 -1.6712 -3.0404 28 1 2.1701 -0.4156 3.2766 29 1 2.2659 1.0749 2.3084 30 1 0.7006 0.2571 2.5307 31 1 0.3601 -1.9270 1.5667 32 1 1.5210 -2.5590 0.3745 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829180260.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:45:36 Heat of formation + Delta-G solvation = 134.701218 kcal Electronic energy + Delta-G solvation = -15866.384153 eV Core-core repulsion = 13286.719916 eV Total energy + Delta-G solvation = -2579.664237 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.128 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.17925 -38.13110 -34.03900 -33.38065 -32.44556 -30.78399 -28.07397 -27.55021 -24.61522 -24.21731 -22.54549 -21.57506 -19.19154 -18.63029 -16.85379 -16.53098 -15.69800 -14.72358 -14.65145 -13.86819 -13.69852 -13.09310 -12.70540 -12.45853 -12.17377 -11.95177 -11.76114 -11.62336 -11.18278 -11.06795 -10.89985 -10.71030 -10.67359 -10.36044 -10.10562 -9.56210 -9.52391 -8.97381 -8.34269 -7.65238 -5.82428 -3.76543 1.37150 2.39178 2.53651 3.42016 3.50466 3.51021 4.13513 4.58464 4.61667 4.65063 5.46826 5.52252 5.55340 5.65458 5.75037 5.75939 5.86053 5.87462 5.93805 6.11655 6.25396 6.39424 6.47566 6.63592 6.74756 7.10317 7.30472 7.61658 7.75018 7.99180 8.54074 8.78124 9.28908 9.80036 11.31897 Molecular weight = 225.13amu Principal moments of inertia in cm(-1) A = 0.024805 B = 0.009545 C = 0.007871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.522019 B = 2932.618889 C = 3556.434054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.098 3.902 3 H 0.082 0.918 4 C -0.010 4.010 5 C -0.490 4.490 6 H 0.077 0.923 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.872 3.128 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.267 1.267 13 N -0.507 5.507 14 C 0.023 3.977 15 C 0.147 3.853 16 C 0.197 3.803 17 N -0.246 5.246 18 N -0.062 5.062 19 N -0.241 5.241 20 H 0.468 0.532 21 N -0.311 5.311 22 H 0.053 0.947 23 H 0.046 0.954 24 H 0.060 0.940 25 H 0.019 0.981 26 H 0.016 0.984 27 H 0.259 0.741 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.022 0.978 31 H 0.058 0.942 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.848 -1.975 11.737 16.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.009 4.009 3 H 0.100 0.900 4 C -0.047 4.047 5 C -0.528 4.528 6 H 0.095 0.905 7 C -0.135 4.135 8 N -0.546 5.546 9 Si 0.700 3.300 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.192 1.192 13 N -0.230 5.230 14 C -0.125 4.125 15 C 0.016 3.984 16 C -0.086 4.086 17 N -0.119 5.119 18 N -0.057 5.057 19 N -0.086 5.086 20 H 0.321 0.679 21 N -0.164 5.164 22 H 0.072 0.928 23 H 0.065 0.935 24 H 0.079 0.921 25 H 0.037 0.963 26 H 0.034 0.966 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.738 -2.478 11.769 15.474 hybrid contribution -1.472 -0.317 -0.112 1.510 sum -11.210 -2.796 11.657 16.412 Atomic orbital electron populations 1.22596 0.99344 1.01526 1.01415 1.21739 0.90053 0.98590 0.90532 0.90030 1.19745 0.98241 0.95346 0.91408 1.20973 0.89098 1.30235 1.12511 0.90514 1.24980 0.94632 0.96383 0.97550 1.69904 1.06193 1.44261 1.34233 0.86919 0.80264 0.80526 0.82295 1.20747 1.21603 1.19203 1.61944 1.58049 1.00569 1.02488 1.22423 0.98533 0.98414 0.93170 1.20392 0.93482 0.90372 0.94148 1.25689 0.93910 0.98002 0.91011 1.76059 1.12505 1.10477 1.12898 1.79006 1.14388 1.17973 0.94378 1.47747 1.17638 1.29712 1.13482 0.67879 1.74667 1.18451 1.14652 1.08609 0.92810 0.93468 0.92080 0.96261 0.96599 0.93104 0.92462 0.91464 0.95919 0.92443 0.86685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.83 8.44 37.16 0.31 -2.52 16 2 C 0.10 1.86 2.26 -67.72 -0.15 1.71 16 3 H 0.08 1.58 8.03 -51.93 -0.42 1.16 16 4 C -0.01 -0.23 3.48 -27.89 -0.10 -0.33 16 5 C -0.49 -13.92 9.37 -34.44 -0.32 -14.24 16 6 H 0.08 2.41 7.99 -52.48 -0.42 1.99 16 7 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 8 N -0.91 -28.73 13.96 55.43 0.77 -27.96 16 9 Si 0.87 22.06 27.56 -169.99 -4.69 17.38 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.27 -6.40 6.41 56.52 0.36 -6.04 16 13 N -0.51 -9.52 4.39 -236.33 -1.04 -10.56 16 14 C 0.02 0.36 9.15 60.06 0.55 0.91 16 15 C 0.15 2.54 4.51 -4.97 -0.02 2.52 16 16 C 0.20 3.45 6.99 -156.62 -1.09 2.36 16 17 N -0.25 -4.82 12.50 32.45 0.41 -4.41 16 18 N -0.06 -0.99 13.48 60.35 0.81 -0.18 16 19 N -0.24 -2.94 7.91 60.34 0.48 -2.46 16 20 H 0.47 3.13 8.96 -340.53 -3.05 0.08 16 21 N -0.31 -4.52 11.59 32.47 0.38 -4.14 16 22 H 0.05 0.77 6.55 -51.93 -0.34 0.43 16 23 H 0.05 0.62 6.76 -51.93 -0.35 0.27 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.02 0.45 4.96 -51.93 -0.26 0.19 16 26 H 0.02 0.36 7.80 -51.93 -0.41 -0.04 16 27 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 28 H 0.06 0.90 6.62 -51.93 -0.34 0.56 16 29 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 30 H 0.02 0.31 6.72 -51.93 -0.35 -0.04 16 31 H 0.06 0.85 6.82 -51.93 -0.35 0.49 16 32 H 0.12 2.18 6.06 -51.93 -0.31 1.86 16 LS Contribution 263.51 15.07 3.97 3.97 Total: -1.00 -33.87 263.51 -6.45 -40.32 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -6.62 Total: -4.19 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -0.92 Total: -7.78 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: 1.81 Total: -49.71 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.69 Total: 17.38 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -33.87 -6.45 -40.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829180260.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.025 kcal (2) G-P(sol) polarization free energy of solvation -33.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds