Wall clock time and date at job start Mon Mar 30 2020 20:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46824 * 2 1 4 4 C 1.52995 * 109.47314 * 240.00018 * 2 1 3 5 5 C 1.50696 * 109.47443 * 175.60158 * 4 2 1 6 6 H 1.08004 * 119.99812 * 355.33476 * 5 4 2 7 7 C 1.37881 * 120.00491 * 175.33010 * 5 4 2 8 8 N 1.31505 * 119.99985 * 179.97438 * 7 5 4 9 9 Si 1.86793 * 119.99565 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47661 * 89.99844 * 9 7 5 11 11 H 1.48506 * 109.47123 * 209.99497 * 9 7 5 12 12 H 1.48509 * 109.47481 * 329.99393 * 9 7 5 13 13 N 1.46895 * 109.47339 * 119.99329 * 2 1 3 14 14 C 1.46895 * 111.00382 * 289.05242 * 13 2 1 15 15 C 1.46902 * 110.99819 * 53.00512 * 13 2 1 16 16 C 1.50706 * 109.47172 * 169.99798 * 15 13 2 17 17 N 1.33312 * 126.54777 * 269.68995 * 16 15 13 18 18 N 1.29003 * 107.34818 * 179.83679 * 17 16 15 19 19 N 1.28774 * 108.72719 * 0.42788 * 18 17 16 20 20 H 0.96999 * 125.44816 * 179.72203 * 19 18 17 21 21 N 1.28884 * 109.10707 * 359.73200 * 19 18 17 22 22 H 1.09000 * 109.46951 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47048 * 300.00169 * 1 2 3 24 24 H 1.09002 * 109.47374 * 60.00418 * 1 2 3 25 25 H 1.09006 * 109.46825 * 295.60254 * 4 2 1 26 26 H 1.08997 * 109.47376 * 55.59629 * 4 2 1 27 27 H 0.97005 * 119.99791 * 180.02562 * 8 7 5 28 28 H 1.08998 * 109.47511 * 181.55434 * 14 13 2 29 29 H 1.08998 * 109.47184 * 301.55456 * 14 13 2 30 30 H 1.09004 * 109.47391 * 61.55360 * 14 13 2 31 31 H 1.09002 * 109.47280 * 289.99707 * 15 13 2 32 32 H 1.08998 * 109.47121 * 49.99988 * 15 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5431 -0.6276 -1.3049 6 1 4.0753 -0.0427 -0.5693 7 6 4.2389 -1.2886 -2.2949 8 7 5.5505 -1.2064 -2.3437 9 14 3.3183 -2.2997 -3.5674 10 1 2.9740 -1.4399 -4.7282 11 1 4.1760 -3.4238 -4.0213 12 1 2.0730 -2.8394 -2.9645 13 7 2.0197 -0.6923 1.1995 14 6 1.7732 0.1076 2.4066 15 6 1.4172 -2.0266 1.3200 16 6 2.1169 -2.7973 2.4098 17 7 3.1805 -3.5880 2.2656 18 7 3.4729 -4.0558 3.4318 19 7 2.6282 -3.5932 4.2866 20 1 2.6218 -3.7929 5.2358 21 7 1.7925 -2.8225 3.6792 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.7425 -1.7692 -1.2106 26 1 1.6138 -0.2550 -2.1374 27 1 6.0399 -1.6712 -3.0404 28 1 2.1701 -0.4156 3.2766 29 1 2.2659 1.0749 2.3084 30 1 0.7006 0.2571 2.5307 31 1 0.3601 -1.9270 1.5667 32 1 1.5210 -2.5590 0.3745 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829180260.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:45:36 Heat of formation + Delta-G solvation = 107.550839 kcal Electronic energy + Delta-G solvation = -15867.561482 eV Core-core repulsion = 13286.719916 eV Total energy + Delta-G solvation = -2580.841566 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.128 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -45.41064 -39.53337 -35.36532 -34.97789 -34.18898 -32.40197 -29.61103 -28.98228 -26.01256 -25.46338 -24.25500 -23.06934 -20.57021 -19.90700 -18.71928 -18.09659 -17.05364 -16.45124 -15.98471 -15.60591 -15.03262 -14.59065 -14.23267 -14.04160 -13.87216 -13.38667 -13.10675 -12.98549 -12.66823 -12.52956 -12.27591 -12.24909 -11.99916 -11.95629 -11.60371 -11.43861 -11.25842 -10.96697 -10.59758 -8.97041 -8.09977 -6.08128 0.17042 1.06878 1.41227 1.45247 1.54362 1.56962 2.48723 2.86264 3.21437 3.34324 3.37892 4.15785 4.21681 4.42175 4.46255 4.51676 4.61751 4.63236 4.69896 4.80193 5.01779 5.08486 5.18167 5.26511 5.32220 5.59961 5.73077 5.82312 6.26079 6.34627 6.56421 6.99239 7.29038 7.52010 9.08111 Molecular weight = 225.13amu Principal moments of inertia in cm(-1) A = 0.024805 B = 0.009545 C = 0.007871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.522019 B = 2932.618889 C = 3556.434054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.102 3.898 3 H 0.068 0.932 4 C -0.009 4.009 5 C -0.485 4.485 6 H 0.029 0.971 7 C -0.005 4.005 8 N -0.961 5.961 9 Si 0.941 3.059 10 H -0.268 1.268 11 H -0.296 1.296 12 H -0.242 1.242 13 N -0.542 5.542 14 C 0.030 3.970 15 C 0.150 3.850 16 C 0.183 3.817 17 N -0.301 5.301 18 N -0.069 5.069 19 N -0.204 5.204 20 H 0.491 0.509 21 N -0.293 5.293 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.024 0.976 26 H 0.026 0.974 27 H 0.258 0.742 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.089 0.911 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.764 -2.355 12.505 18.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.005 4.005 3 H 0.087 0.913 4 C -0.047 4.047 5 C -0.523 4.523 6 H 0.048 0.952 7 C -0.199 4.199 8 N -0.604 5.604 9 Si 0.766 3.234 10 H -0.193 1.193 11 H -0.222 1.222 12 H -0.165 1.165 13 N -0.267 5.267 14 C -0.118 4.118 15 C 0.020 3.980 16 C -0.100 4.100 17 N -0.173 5.173 18 N -0.065 5.065 19 N -0.055 5.055 20 H 0.350 0.650 21 N -0.147 5.147 22 H 0.082 0.918 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.042 0.958 26 H 0.044 0.956 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.678 -2.856 12.572 18.082 hybrid contribution -0.511 -0.150 -0.161 0.556 sum -13.189 -3.006 12.411 18.358 Atomic orbital electron populations 1.22453 0.95531 1.02677 1.03051 1.21528 0.92974 0.97089 0.88937 0.91333 1.19715 0.94387 0.96356 0.94224 1.21265 0.92091 1.28388 1.10579 0.95224 1.25952 0.95423 0.98176 1.00381 1.70094 1.08377 1.46269 1.35682 0.85795 0.79526 0.78579 0.79501 1.19337 1.22233 1.16513 1.61788 1.59723 1.01691 1.03464 1.22367 1.00164 0.97603 0.91666 1.20333 0.95041 0.89273 0.93352 1.25741 0.93917 0.98359 0.91998 1.76032 1.14221 1.12398 1.14659 1.78922 1.15012 1.18342 0.94199 1.47807 1.15818 1.27551 1.14329 0.64999 1.74626 1.18253 1.14393 1.07474 0.91837 0.91221 0.91123 0.95789 0.95551 0.93313 0.92762 0.91905 0.93213 0.89292 0.88840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.66 8.44 71.98 0.61 -4.05 16 2 C 0.10 3.72 2.26 44.92 0.10 3.82 16 3 H 0.07 2.62 8.03 -2.38 -0.02 2.60 16 4 C -0.01 -0.42 3.48 29.84 0.10 -0.32 16 5 C -0.48 -28.22 9.37 25.60 0.24 -27.98 16 6 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 7 C 0.00 -0.30 5.47 84.66 0.46 0.17 16 8 N -0.96 -63.31 13.96 21.45 0.30 -63.01 16 9 Si 0.94 45.64 27.56 68.60 1.89 47.54 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 12 H -0.24 -10.62 6.41 99.48 0.64 -9.99 16 13 N -0.54 -19.80 4.39 -901.62 -3.96 -23.76 16 14 C 0.03 0.88 9.15 127.69 1.17 2.05 16 15 C 0.15 4.96 4.51 85.56 0.39 5.35 16 16 C 0.18 6.18 6.99 138.55 0.97 7.15 16 17 N -0.30 -11.73 12.50 -51.26 -0.64 -12.38 16 18 N -0.07 -2.17 13.48 37.02 0.50 -1.67 16 19 N -0.20 -4.53 7.91 37.00 0.29 -4.24 16 20 H 0.49 5.17 8.96 -347.68 -3.12 2.06 16 21 N -0.29 -7.83 11.59 -51.20 -0.59 -8.42 16 22 H 0.06 1.55 6.55 -2.39 -0.02 1.53 16 23 H 0.07 1.53 6.76 -2.39 -0.02 1.51 16 24 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.02 1.07 4.96 -2.38 -0.01 1.06 16 26 H 0.03 1.14 7.80 -2.39 -0.02 1.12 16 27 H 0.26 16.04 8.31 -92.70 -0.77 15.27 16 28 H 0.05 1.60 6.62 -2.39 -0.02 1.59 16 29 H 0.06 1.86 8.09 -2.39 -0.02 1.84 16 30 H 0.05 1.18 6.72 -2.38 -0.02 1.17 16 31 H 0.09 2.31 6.82 -2.39 -0.02 2.29 16 32 H 0.09 3.45 6.06 -2.39 -0.01 3.44 16 Total: -1.00 -75.89 263.51 -0.22 -76.10 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -2.04 Total: 3.66 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: 4.04 Total: -13.81 kcal Atomic # 7 Polarization: -109.38 SS G_CDS: -4.10 Total: -113.48 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.89 Total: 47.54 kcal Total: -75.89 -0.22 -76.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829180260.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.654 kcal (2) G-P(sol) polarization free energy of solvation -75.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds