Wall clock time and date at job start Mon Mar 30 2020 20:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34794 * 116.99974 * 2 1 4 4 O 1.21542 * 119.99978 * 0.02562 * 3 2 1 5 5 C 1.46950 * 120.00081 * 180.02562 * 3 2 1 6 6 C 1.32709 * 124.62716 * 180.02562 * 5 3 2 7 7 C 1.51114 * 110.74127 * 179.97438 * 6 5 3 8 8 C 1.54572 * 104.84426 * 16.60228 * 7 6 5 9 9 H 1.08997 * 110.98516 * 93.09872 * 8 7 6 10 10 N 1.46904 * 110.98206 * 216.85208 * 8 7 6 11 11 C 1.46899 * 111.00029 * 273.54898 * 10 8 7 12 12 C 1.50703 * 109.47107 * 179.97438 * 11 10 8 13 13 H 1.07996 * 119.99751 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00001 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99923 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 120.00006 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47093 * 90.00088 * 16 14 12 18 18 H 1.48500 * 109.47049 * 210.00797 * 16 14 12 19 19 H 1.48504 * 109.47189 * 330.00185 * 16 14 12 20 20 C 1.51112 * 124.62905 * 359.97119 * 5 3 2 21 21 H 1.09005 * 109.46967 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46999 * 299.99449 * 1 2 3 23 23 H 1.09004 * 109.46992 * 59.99880 * 1 2 3 24 24 H 1.07998 * 124.62757 * 359.97438 * 6 5 3 25 25 H 1.08997 * 110.36432 * 257.75990 * 7 6 5 26 26 H 1.08997 * 110.36660 * 135.44364 * 7 6 5 27 27 H 1.00908 * 110.99583 * 37.49810 * 10 8 7 28 28 H 1.09002 * 109.47043 * 299.99792 * 11 10 8 29 29 H 1.09001 * 109.47354 * 59.99854 * 11 10 8 30 30 H 0.97000 * 119.99684 * 180.02562 * 15 14 12 31 31 H 1.09001 * 110.35892 * 44.59624 * 20 5 3 32 32 H 1.08998 * 110.36437 * 282.28604 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0640 1.2010 0.0000 4 8 1.4020 2.2204 0.0005 5 6 3.5315 1.2780 -0.0006 6 6 4.2274 2.4080 -0.0001 7 6 5.7113 2.1226 -0.0003 8 6 5.8298 0.6419 -0.4278 9 1 5.9693 0.5568 -1.5055 10 7 6.9185 -0.0289 0.2952 11 6 8.2022 0.1588 -0.3939 12 6 9.2925 -0.5412 0.3758 13 1 9.0556 -1.0719 1.2860 14 6 10.5927 -0.5030 -0.0816 15 7 11.5441 -1.1143 0.5898 16 14 11.0025 0.4156 -1.6557 17 1 11.3372 1.8259 -1.3329 18 1 12.1646 -0.2301 -2.3173 19 1 9.8314 0.3811 -2.5682 20 6 4.4541 0.0812 -0.0006 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 3.7925 3.3965 0.0003 25 1 6.1248 2.2633 0.9983 26 1 6.2213 2.7663 -0.7170 27 1 6.9703 0.2929 1.2502 28 1 8.1399 -0.2598 -1.3984 29 1 8.4284 1.2232 -0.4572 30 1 12.4588 -1.0871 0.2682 31 1 4.1091 -0.6636 -0.7177 32 1 4.5139 -0.3517 0.9980 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863573918.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:45:49 Heat of formation + Delta-G solvation = -68.886175 kcal Electronic energy + Delta-G solvation = -14947.853118 eV Core-core repulsion = 12294.775167 eV Total energy + Delta-G solvation = -2653.077951 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.51902 -38.59980 -36.49081 -34.38923 -32.22529 -29.31701 -28.51469 -27.42059 -25.80673 -22.62404 -21.35698 -20.43325 -18.98575 -17.36815 -17.03558 -16.66485 -16.43486 -15.27219 -14.59084 -14.25581 -13.77442 -13.43600 -12.91688 -12.79317 -12.57423 -12.46537 -12.13485 -12.06885 -11.67663 -11.27335 -11.17503 -10.94165 -10.75819 -10.69046 -10.29673 -9.82246 -9.32747 -9.02691 -8.63559 -7.56406 -6.08830 -4.07300 1.05979 2.65001 2.89525 3.25883 3.34151 3.35858 4.38945 4.45175 4.61284 4.91624 4.95159 4.99419 5.08350 5.23098 5.24427 5.31440 5.54108 5.69741 5.85530 5.92312 5.96377 6.20421 6.32589 6.36009 6.46703 6.72827 6.96377 7.56042 7.65536 7.83775 8.25351 8.60315 8.99182 9.52709 11.04446 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.059950 B = 0.004913 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.947239 B = 5698.347607 C = 5907.352809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.350 6.350 3 C 0.519 3.481 4 O -0.518 6.518 5 C -0.183 4.183 6 C -0.048 4.048 7 C -0.143 4.143 8 C 0.085 3.915 9 H 0.087 0.913 10 N -0.668 5.668 11 C 0.163 3.837 12 C -0.518 4.518 13 H 0.079 0.921 14 C 0.069 3.931 15 N -0.899 5.899 16 Si 0.878 3.122 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.267 1.267 20 C -0.072 4.072 21 H 0.102 0.898 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.136 0.864 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.338 0.662 28 H 0.028 0.972 29 H -0.018 1.018 30 H 0.264 0.736 31 H 0.078 0.922 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.890 5.048 -2.266 18.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.266 6.266 3 C 0.366 3.634 4 O -0.408 6.408 5 C -0.184 4.184 6 C -0.067 4.067 7 C -0.182 4.182 8 C -0.027 4.027 9 H 0.105 0.895 10 N -0.297 5.297 11 C 0.036 3.964 12 C -0.557 4.557 13 H 0.097 0.903 14 C -0.133 4.133 15 N -0.538 5.538 16 Si 0.705 3.295 17 H -0.203 1.203 18 H -0.211 1.211 19 H -0.191 1.191 20 C -0.110 4.110 21 H 0.120 0.880 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.154 0.846 25 H 0.111 0.889 26 H 0.100 0.900 27 H 0.157 0.843 28 H 0.046 0.954 29 H -0.001 1.001 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.006 4.632 -2.558 18.768 hybrid contribution 0.259 1.548 -0.603 1.681 sum -17.747 6.179 -3.160 19.056 Atomic orbital electron populations 1.23263 0.76429 1.03700 1.02402 1.86639 1.23183 1.32675 1.84148 1.21000 0.89020 0.81228 0.72195 1.90836 1.66977 1.36187 1.46821 1.21085 0.88940 0.98559 1.09852 1.24184 0.95938 0.97562 0.88992 1.22451 0.92196 1.00392 1.03131 1.22464 0.92006 0.88986 0.99218 0.89467 1.60484 1.04754 1.59098 1.05379 1.20045 0.86664 0.94199 0.95520 1.21059 0.90530 1.33270 1.10803 0.90255 1.24907 0.96248 0.95234 0.96904 1.69898 1.01029 1.43495 1.39399 0.86822 0.78302 0.80107 0.84240 1.20345 1.21143 1.19138 1.21184 0.91895 0.94604 1.03309 0.88004 0.91967 0.91996 0.84613 0.88862 0.89995 0.84307 0.95448 1.00057 0.92606 0.90341 0.89417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.57 101.05 1.07 1.38 16 2 O -0.35 -4.36 10.39 -40.75 -0.42 -4.78 16 3 C 0.52 7.22 7.94 34.26 0.27 7.49 16 4 O -0.52 -8.12 16.56 -19.30 -0.32 -8.43 16 5 C -0.18 -2.44 6.09 -102.78 -0.63 -3.07 16 6 C -0.05 -0.59 10.44 -35.99 -0.38 -0.97 16 7 C -0.14 -1.89 6.45 -26.85 -0.17 -2.06 16 8 C 0.09 1.32 3.41 -66.05 -0.23 1.10 16 9 H 0.09 1.38 7.92 -51.93 -0.41 0.97 16 10 N -0.67 -12.94 6.32 -106.24 -0.67 -13.61 16 11 C 0.16 3.79 4.38 -4.98 -0.02 3.77 16 12 C -0.52 -14.48 9.87 -34.44 -0.34 -14.82 16 13 H 0.08 2.41 8.06 -52.49 -0.42 1.98 16 14 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 15 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 16 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 20 C -0.07 -1.00 6.29 -26.85 -0.17 -1.17 16 21 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.14 1.51 8.03 -52.49 -0.42 1.09 16 25 H 0.09 1.22 7.64 -51.93 -0.40 0.83 16 26 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.34 6.30 8.20 -39.29 -0.32 5.97 16 28 H 0.03 0.66 7.15 -51.93 -0.37 0.29 16 29 H -0.02 -0.41 7.57 -51.93 -0.39 -0.81 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.09 1.24 8.08 -51.93 -0.42 0.82 16 LS Contribution 278.00 15.07 4.19 4.19 Total: -1.00 -31.40 278.00 -6.25 -37.65 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -4.44 Total: 1.53 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -0.69 Total: -6.48 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.10 Total: -40.15 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.74 Total: -13.22 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.40 -6.25 -37.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863573918.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.238 kcal (2) G-P(sol) polarization free energy of solvation -31.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds