Wall clock time and date at job start Mon Mar 30 2020 20:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34794 * 116.99974 * 2 1 4 4 O 1.21542 * 119.99978 * 0.02562 * 3 2 1 5 5 C 1.46950 * 120.00081 * 180.02562 * 3 2 1 6 6 C 1.32709 * 124.62716 * 180.02562 * 5 3 2 7 7 C 1.51114 * 110.74127 * 179.97438 * 6 5 3 8 8 C 1.54572 * 104.84426 * 16.60228 * 7 6 5 9 9 H 1.08997 * 110.98516 * 93.09872 * 8 7 6 10 10 N 1.46904 * 110.98206 * 216.85208 * 8 7 6 11 11 C 1.46899 * 111.00029 * 273.54898 * 10 8 7 12 12 C 1.50703 * 109.47107 * 179.97438 * 11 10 8 13 13 H 1.07996 * 119.99751 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00001 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99923 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 120.00006 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47093 * 90.00088 * 16 14 12 18 18 H 1.48500 * 109.47049 * 210.00797 * 16 14 12 19 19 H 1.48504 * 109.47189 * 330.00185 * 16 14 12 20 20 C 1.51112 * 124.62905 * 359.97119 * 5 3 2 21 21 H 1.09005 * 109.46967 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46999 * 299.99449 * 1 2 3 23 23 H 1.09004 * 109.46992 * 59.99880 * 1 2 3 24 24 H 1.07998 * 124.62757 * 359.97438 * 6 5 3 25 25 H 1.08997 * 110.36432 * 257.75990 * 7 6 5 26 26 H 1.08997 * 110.36660 * 135.44364 * 7 6 5 27 27 H 1.00908 * 110.99583 * 37.49810 * 10 8 7 28 28 H 1.09002 * 109.47043 * 299.99792 * 11 10 8 29 29 H 1.09001 * 109.47354 * 59.99854 * 11 10 8 30 30 H 0.97000 * 119.99684 * 180.02562 * 15 14 12 31 31 H 1.09001 * 110.35892 * 44.59624 * 20 5 3 32 32 H 1.08998 * 110.36437 * 282.28604 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0640 1.2010 0.0000 4 8 1.4020 2.2204 0.0005 5 6 3.5315 1.2780 -0.0006 6 6 4.2274 2.4080 -0.0001 7 6 5.7113 2.1226 -0.0003 8 6 5.8298 0.6419 -0.4278 9 1 5.9693 0.5568 -1.5055 10 7 6.9185 -0.0289 0.2952 11 6 8.2022 0.1588 -0.3939 12 6 9.2925 -0.5412 0.3758 13 1 9.0556 -1.0719 1.2860 14 6 10.5927 -0.5030 -0.0816 15 7 11.5441 -1.1143 0.5898 16 14 11.0025 0.4156 -1.6557 17 1 11.3372 1.8259 -1.3329 18 1 12.1646 -0.2301 -2.3173 19 1 9.8314 0.3811 -2.5682 20 6 4.4541 0.0812 -0.0006 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 3.7925 3.3965 0.0003 25 1 6.1248 2.2633 0.9983 26 1 6.2213 2.7663 -0.7170 27 1 6.9703 0.2929 1.2502 28 1 8.1399 -0.2598 -1.3984 29 1 8.4284 1.2232 -0.4572 30 1 12.4588 -1.0871 0.2682 31 1 4.1091 -0.6636 -0.7177 32 1 4.5139 -0.3517 0.9980 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863573918.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:45:48 Heat of formation + Delta-G solvation = -90.357750 kcal Electronic energy + Delta-G solvation = -14948.784196 eV Core-core repulsion = 12294.775167 eV Total energy + Delta-G solvation = -2654.009029 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.54146 -39.75115 -37.51699 -36.02876 -34.20508 -30.57787 -29.82235 -28.33718 -27.36670 -23.65572 -23.25224 -21.68050 -19.98984 -18.90195 -18.39416 -17.90296 -17.41705 -16.79483 -16.13222 -15.54465 -15.22433 -14.68498 -14.34624 -14.15850 -13.84278 -13.66002 -13.55957 -13.21691 -12.88356 -12.60757 -12.51396 -12.40351 -12.04031 -11.82207 -11.78680 -11.64742 -11.38313 -10.79159 -10.07269 -9.09976 -8.27149 -6.31656 0.04127 1.37834 1.40526 1.51172 1.75753 1.86091 2.36988 3.07494 3.26864 3.55190 3.76968 3.99725 4.15412 4.28419 4.32963 4.33242 4.54516 4.70712 4.76846 4.79752 4.87247 4.92486 5.09345 5.16334 5.23650 5.33037 5.43143 5.56731 5.99655 6.59091 6.64740 6.69489 6.80467 7.33569 8.89694 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.059950 B = 0.004913 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.947239 B = 5698.347607 C = 5907.352809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.521 3.479 4 O -0.541 6.541 5 C -0.195 4.195 6 C -0.030 4.030 7 C -0.138 4.138 8 C 0.080 3.920 9 H 0.087 0.913 10 N -0.678 5.678 11 C 0.175 3.825 12 C -0.529 4.529 13 H 0.037 0.963 14 C 0.007 3.993 15 N -0.949 5.949 16 Si 0.951 3.049 17 H -0.265 1.265 18 H -0.285 1.285 19 H -0.247 1.247 20 C -0.063 4.063 21 H 0.131 0.869 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.154 0.846 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.341 0.659 28 H 0.026 0.974 29 H -0.006 1.006 30 H 0.267 0.733 31 H 0.079 0.921 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.022 6.380 -3.663 20.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C 0.369 3.631 4 O -0.433 6.433 5 C -0.196 4.196 6 C -0.048 4.048 7 C -0.176 4.176 8 C -0.031 4.031 9 H 0.105 0.895 10 N -0.308 5.308 11 C 0.046 3.954 12 C -0.567 4.567 13 H 0.055 0.945 14 C -0.190 4.190 15 N -0.590 5.590 16 Si 0.775 3.225 17 H -0.190 1.190 18 H -0.211 1.211 19 H -0.171 1.171 20 C -0.101 4.101 21 H 0.150 0.850 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.171 0.829 25 H 0.115 0.885 26 H 0.112 0.888 27 H 0.159 0.841 28 H 0.044 0.956 29 H 0.012 0.988 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.178 5.958 -3.949 20.467 hybrid contribution 0.539 1.051 -0.079 1.184 sum -18.639 7.008 -4.028 20.316 Atomic orbital electron populations 1.23589 0.74425 1.05817 1.02673 1.86624 1.25230 1.31943 1.83680 1.21033 0.89135 0.81330 0.71645 1.90821 1.67429 1.36873 1.48189 1.21019 0.88867 0.98503 1.11245 1.24271 0.95179 0.98086 0.87304 1.22357 0.92996 0.98665 1.03587 1.22505 0.91192 0.90596 0.98785 0.89464 1.60347 1.04125 1.60658 1.05651 1.19776 0.86934 0.93943 0.94716 1.21382 0.92375 1.33034 1.09921 0.94490 1.25892 0.96014 0.96247 1.00892 1.70061 1.01645 1.45548 1.41752 0.85654 0.78521 0.78862 0.79500 1.18987 1.21066 1.17077 1.21036 0.91093 0.94960 1.03036 0.85041 0.91760 0.91704 0.82874 0.88546 0.88762 0.84063 0.95625 0.98817 0.92433 0.90195 0.89925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.57 113.37 1.20 1.63 16 2 O -0.36 -8.38 10.39 -57.06 -0.59 -8.97 16 3 C 0.52 13.70 7.94 70.10 0.56 14.26 16 4 O -0.54 -16.16 16.56 19.70 0.33 -15.83 16 5 C -0.19 -4.83 6.09 -18.62 -0.11 -4.95 16 6 C -0.03 -0.66 10.44 24.64 0.26 -0.40 16 7 C -0.14 -3.28 6.45 30.51 0.20 -3.08 16 8 C 0.08 2.34 3.41 45.99 0.16 2.50 16 9 H 0.09 2.57 7.92 -2.39 -0.02 2.55 16 10 N -0.68 -25.70 6.32 -490.03 -3.10 -28.79 16 11 C 0.17 7.89 4.38 85.56 0.37 8.27 16 12 C -0.53 -29.94 9.87 25.60 0.25 -29.68 16 13 H 0.04 2.33 8.06 -2.91 -0.02 2.31 16 14 C 0.01 0.39 5.47 84.65 0.46 0.86 16 15 N -0.95 -58.84 13.96 21.45 0.30 -58.54 16 16 Si 0.95 42.90 27.47 68.60 1.88 44.78 16 17 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.25 -10.29 6.54 99.48 0.65 -9.64 16 20 C -0.06 -1.67 6.29 30.52 0.19 -1.48 16 21 H 0.13 1.22 8.14 -2.38 -0.02 1.20 16 22 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 24 H 0.15 2.92 8.03 -2.91 -0.02 2.90 16 25 H 0.10 2.30 7.64 -2.39 -0.02 2.28 16 26 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.34 12.55 8.20 -89.69 -0.74 11.81 16 28 H 0.03 1.18 7.15 -2.39 -0.02 1.16 16 29 H -0.01 -0.25 7.57 -2.39 -0.02 -0.27 16 30 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 31 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.08 2.25 8.08 -2.39 -0.02 2.23 16 Total: -1.00 -67.63 278.00 2.68 -64.95 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.32 Total: 14.49 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 3.53 Total: -12.07 kcal Atomic # 7 Polarization: -84.54 SS G_CDS: -2.80 Total: -87.34 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.27 Total: -24.80 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.88 Total: 44.78 kcal Total: -67.63 2.68 -64.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863573918.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.411 kcal (2) G-P(sol) polarization free energy of solvation -67.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds