Wall clock time and date at job start Mon Mar 30 2020 20:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34804 * 116.99538 * 2 1 4 4 O 1.21533 * 120.00206 * 359.97438 * 3 2 1 5 5 C 1.46955 * 119.99661 * 180.27086 * 3 2 1 6 6 C 1.32701 * 124.63044 * 179.74480 * 5 3 2 7 7 C 1.51110 * 110.74564 * 180.02562 * 6 5 3 8 8 C 1.54570 * 104.84656 * 343.39733 * 7 6 5 9 9 H 1.08999 * 110.98028 * 266.94247 * 8 7 6 10 10 N 1.46896 * 110.98295 * 143.18349 * 8 7 6 11 11 C 1.46901 * 110.99784 * 86.45358 * 10 8 7 12 12 C 1.50700 * 109.46945 * 179.97438 * 11 10 8 13 13 H 1.08001 * 120.00009 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99907 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00000 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00045 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46823 * 90.00022 * 16 14 12 18 18 H 1.48493 * 109.47268 * 209.99977 * 16 14 12 19 19 H 1.48502 * 109.46775 * 330.00300 * 16 14 12 20 20 C 1.51119 * 124.62692 * 359.44920 * 5 3 2 21 21 H 1.09004 * 109.46770 * 60.00894 * 1 2 3 22 22 H 1.09001 * 109.46882 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47630 * 300.00490 * 1 2 3 24 24 H 1.08001 * 124.62359 * 0.02562 * 6 5 3 25 25 H 1.08999 * 110.36427 * 102.24092 * 7 6 5 26 26 H 1.09002 * 110.36166 * 224.44655 * 7 6 5 27 27 H 1.00898 * 111.00311 * 322.50338 * 10 8 7 28 28 H 1.09000 * 109.47197 * 300.00219 * 11 10 8 29 29 H 1.08998 * 109.47215 * 60.00161 * 11 10 8 30 30 H 0.97000 * 120.00063 * 180.02562 * 15 14 12 31 31 H 1.09002 * 110.36436 * 315.44013 * 20 5 3 32 32 H 1.08998 * 110.36468 * 77.76239 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2012 0.0000 4 8 1.4020 2.2204 -0.0005 5 6 3.5314 1.2781 -0.0060 6 6 4.2273 2.4080 -0.0114 7 6 5.7112 2.1227 -0.0173 8 6 5.8317 0.6428 0.4122 9 1 5.9752 0.5594 1.4895 10 7 6.9177 -0.0289 -0.3139 11 6 8.2040 0.1601 0.3701 12 6 9.2913 -0.5419 -0.4019 13 1 9.0510 -1.0747 -1.3100 14 6 10.5930 -0.5038 0.0512 15 7 10.8856 0.1446 1.1573 16 14 11.9408 -1.3745 -0.9053 17 1 12.5227 -0.4404 -1.9023 18 1 13.0022 -1.8227 0.0315 19 1 11.3687 -2.5525 -1.6055 20 6 4.4541 0.0813 -0.0005 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 3.7924 3.3966 -0.0115 25 1 6.1203 2.2618 -1.0180 26 1 6.2245 2.7690 0.6948 27 1 6.9660 0.2912 -1.2695 28 1 8.4302 1.2246 0.4308 29 1 8.1456 -0.2568 1.3755 30 1 11.8014 0.1717 1.4759 31 1 4.1117 -0.6583 0.7233 32 1 4.5105 -0.3588 -0.9961 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863573924.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:45:51 Heat of formation + Delta-G solvation = -73.421246 kcal Electronic energy + Delta-G solvation = -14896.250649 eV Core-core repulsion = 12242.976042 eV Total energy + Delta-G solvation = -2653.274607 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.46303 -38.49423 -36.43768 -34.25647 -32.18669 -29.15990 -28.21176 -27.32356 -25.50804 -22.56430 -21.74301 -20.27284 -18.91888 -17.31064 -16.91263 -16.42461 -16.27740 -15.17688 -14.41534 -14.36259 -13.77333 -13.37577 -12.87542 -12.48729 -12.41737 -12.35587 -12.09092 -11.73614 -11.43620 -11.12034 -10.99675 -10.90054 -10.73374 -10.68923 -10.46824 -9.91528 -9.21074 -8.93944 -8.51516 -7.35807 -6.05815 -4.07927 1.12884 2.70078 2.95763 3.30655 3.37090 3.41592 4.40123 4.55851 4.71819 4.95607 5.02637 5.06586 5.20465 5.30604 5.34133 5.35763 5.68836 5.81766 5.95286 6.03488 6.07950 6.26262 6.41940 6.49069 6.55327 7.20735 7.38020 7.70793 7.75500 8.09075 8.33457 8.55798 9.01233 9.57289 11.05207 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.065121 B = 0.004573 C = 0.004400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.866844 B = 6120.854228 C = 6361.395966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.351 6.351 3 C 0.519 3.481 4 O -0.518 6.518 5 C -0.185 4.185 6 C -0.046 4.046 7 C -0.141 4.141 8 C 0.088 3.912 9 H 0.087 0.913 10 N -0.678 5.678 11 C 0.193 3.807 12 C -0.516 4.516 13 H 0.063 0.937 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.899 3.101 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.273 1.273 20 C -0.072 4.072 21 H 0.061 0.939 22 H 0.101 0.899 23 H 0.061 0.939 24 H 0.135 0.865 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.332 0.668 28 H -0.011 1.011 29 H 0.029 0.971 30 H 0.262 0.738 31 H 0.077 0.923 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.985 1.940 -2.016 16.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.267 6.267 3 C 0.366 3.634 4 O -0.409 6.409 5 C -0.186 4.186 6 C -0.065 4.065 7 C -0.180 4.180 8 C -0.024 4.024 9 H 0.105 0.895 10 N -0.307 5.307 11 C 0.067 3.933 12 C -0.555 4.555 13 H 0.081 0.919 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.727 3.273 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.110 4.110 21 H 0.080 0.920 22 H 0.119 0.881 23 H 0.080 0.920 24 H 0.153 0.847 25 H 0.109 0.891 26 H 0.101 0.899 27 H 0.149 0.851 28 H 0.007 0.993 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.146 1.607 -1.599 16.304 hybrid contribution 0.693 0.689 -0.602 1.148 sum -15.453 2.296 -2.201 15.777 Atomic orbital electron populations 1.23253 0.76517 1.03646 1.02382 1.86642 1.23116 1.32730 1.84190 1.21022 0.89049 0.81187 0.72150 1.90829 1.66990 1.36189 1.46888 1.21083 0.88859 0.98614 1.10074 1.24214 0.96104 0.97488 0.88729 1.22436 0.91915 1.00614 1.03037 1.22364 0.91822 0.88832 0.99332 0.89522 1.60642 1.05820 1.59045 1.05199 1.19596 0.83862 0.94928 0.94962 1.21190 0.91748 1.32844 1.09703 0.91923 1.24984 0.98786 0.95587 0.95157 1.69956 1.19520 1.42497 1.21732 0.86485 0.81343 0.79930 0.79581 1.20738 1.21241 1.19734 1.21164 0.92171 0.94564 1.03127 0.92018 0.88052 0.91994 0.84695 0.89080 0.89876 0.85078 0.99306 0.95301 0.92882 0.90468 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.57 101.05 1.07 1.39 16 2 O -0.35 -4.51 10.39 -40.78 -0.42 -4.93 16 3 C 0.52 7.49 7.94 34.26 0.27 7.76 16 4 O -0.52 -8.37 16.56 -19.29 -0.32 -8.69 16 5 C -0.18 -2.59 6.09 -102.78 -0.63 -3.22 16 6 C -0.05 -0.61 10.43 -35.99 -0.38 -0.99 16 7 C -0.14 -2.02 6.45 -26.86 -0.17 -2.20 16 8 C 0.09 1.47 3.39 -66.17 -0.22 1.24 16 9 H 0.09 1.51 7.92 -51.93 -0.41 1.10 16 10 N -0.68 -13.73 6.32 -106.36 -0.67 -14.40 16 11 C 0.19 4.86 5.31 -4.98 -0.03 4.83 16 12 C -0.52 -14.29 9.32 -34.44 -0.32 -14.61 16 13 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 16 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 C -0.07 -1.06 6.30 -26.95 -0.17 -1.23 16 21 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.14 1.60 8.03 -52.49 -0.42 1.18 16 25 H 0.09 1.29 7.64 -51.93 -0.40 0.89 16 26 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.33 6.36 8.20 -39.29 -0.32 6.04 16 28 H -0.01 -0.29 8.14 -51.93 -0.42 -0.71 16 29 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 LS Contribution 281.59 15.07 4.24 4.24 Total: -1.00 -30.75 281.59 -6.60 -37.35 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -4.47 Total: 1.27 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -0.67 Total: -5.53 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.06 Total: -40.06 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.74 Total: -13.63 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.75 -6.60 -37.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863573924.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.073 kcal (2) G-P(sol) polarization free energy of solvation -30.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds