Wall clock time and date at job start Mon Mar 30 2020 20:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 110.99444 * 2 1 4 4 C 1.50699 * 109.47248 * 293.95269 * 3 2 1 5 5 C 1.39866 * 125.89897 * 95.00126 * 4 3 2 6 6 C 1.35318 * 107.91960 * 180.02562 * 5 4 3 7 7 N 1.34947 * 107.74649 * 0.02562 * 6 5 4 8 8 H 0.97001 * 126.03495 * 180.02562 * 7 6 5 9 9 N 1.30842 * 125.89426 * 274.69606 * 4 3 2 10 10 C 1.46897 * 110.99759 * 123.95146 * 2 1 3 11 11 C 1.53002 * 109.46752 * 164.01299 * 10 2 1 12 12 H 1.08998 * 109.47651 * 58.50696 * 11 10 2 13 13 O 1.42906 * 109.47259 * 298.50731 * 11 10 2 14 14 C 1.50702 * 109.47161 * 178.51089 * 11 10 2 15 15 H 1.08003 * 119.99941 * 359.71892 * 14 11 10 16 16 C 1.37875 * 120.00049 * 180.02562 * 14 11 10 17 17 N 1.31518 * 120.00096 * 359.72302 * 16 14 11 18 18 Si 1.86802 * 120.00187 * 179.72035 * 16 14 11 19 19 H 1.48503 * 109.46721 * 89.99708 * 18 16 14 20 20 H 1.48496 * 109.47336 * 209.99692 * 18 16 14 21 21 H 1.48497 * 109.47115 * 330.00254 * 18 16 14 22 22 H 1.09000 * 109.47266 * 301.86073 * 1 2 3 23 23 H 1.09001 * 109.47014 * 61.86507 * 1 2 3 24 24 H 1.09004 * 109.46775 * 181.86005 * 1 2 3 25 25 H 1.08996 * 109.47375 * 53.95900 * 3 2 1 26 26 H 1.09005 * 109.46262 * 173.95493 * 3 2 1 27 27 H 1.07993 * 126.03991 * 0.02562 * 5 4 3 28 28 H 1.08000 * 126.12535 * 179.97438 * 6 5 4 29 29 H 1.08998 * 109.47484 * 44.01370 * 10 2 1 30 30 H 1.09000 * 109.47477 * 284.01126 * 10 2 1 31 31 H 0.96700 * 113.99671 * 300.00650 * 13 11 10 32 32 H 0.96998 * 120.00129 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2984 5 6 0.5245 2.8666 -1.5167 6 6 0.5561 3.2767 -2.8059 7 7 1.6493 2.7355 -3.3830 8 1 1.9276 2.8572 -4.3042 9 7 2.3154 1.9731 -2.4147 10 6 1.9954 -0.7659 1.1376 11 6 3.4728 -1.0838 0.8984 12 1 4.0282 -0.1549 0.7697 13 8 3.6034 -1.8838 -0.2785 14 6 4.0224 -1.8379 2.0818 15 1 3.3831 -2.0635 2.9226 16 6 5.3428 -2.2343 2.0939 17 7 6.1214 -1.9591 1.0703 18 14 6.0261 -3.1622 3.5642 19 1 5.8483 -4.6215 3.3546 20 1 7.4714 -2.8562 3.7145 21 1 5.3017 -2.7465 4.7920 22 1 -0.3634 0.5425 0.8728 23 1 -0.3633 0.4846 -0.9062 24 1 -0.3633 -1.0272 0.0334 25 1 1.5611 1.9274 0.8309 26 1 3.0797 1.3444 0.1082 27 1 -0.2267 3.1261 -0.7856 28 1 -0.1649 3.9210 -3.2869 29 1 1.4357 -1.6956 1.2399 30 1 1.8933 -0.1781 2.0498 31 1 3.1334 -2.7277 -0.2346 32 1 7.0503 -2.2383 1.0786 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929625621.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:46:06 Heat of formation + Delta-G solvation = 33.262215 kcal Electronic energy + Delta-G solvation = -15480.039164 eV Core-core repulsion = 12863.683450 eV Total energy + Delta-G solvation = -2616.355714 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.122 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.93637 -37.30069 -34.75324 -31.99131 -31.64132 -29.77496 -28.53234 -27.08682 -25.31205 -22.51621 -21.21256 -20.23829 -19.15839 -17.95006 -16.88094 -15.12021 -14.80230 -14.63334 -14.39281 -14.07664 -13.43986 -13.35753 -13.32626 -13.04037 -12.34561 -12.09931 -11.36827 -11.24110 -11.02139 -10.86766 -10.69604 -10.52883 -10.27063 -9.94980 -9.26841 -8.87744 -8.57087 -8.48458 -8.00908 -7.52431 -5.91556 -4.10448 2.08888 2.94741 3.08193 3.32692 3.39519 3.41890 4.42622 4.70615 4.92328 4.95574 5.35433 5.51033 5.71204 5.74161 5.86694 5.90743 6.05500 6.14943 6.24480 6.32567 6.43660 6.65806 6.83152 6.89906 7.43113 7.58009 7.69654 7.85769 7.95527 8.00795 8.29436 8.93862 9.56441 9.74251 11.12283 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.048346 B = 0.006177 C = 0.005802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.021320 B = 4532.011492 C = 4824.906350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.524 5.524 3 C 0.131 3.869 4 C 0.094 3.906 5 C -0.270 4.270 6 C 0.046 3.954 7 N -0.485 5.485 8 H 0.436 0.564 9 N -0.263 5.263 10 C 0.031 3.969 11 C 0.238 3.762 12 H 0.054 0.946 13 O -0.551 6.551 14 C -0.575 4.575 15 H 0.054 0.946 16 C 0.080 3.920 17 N -0.857 5.857 18 Si 0.888 3.112 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 H 0.016 0.984 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.047 0.953 26 H 0.097 0.903 27 H 0.142 0.858 28 H 0.171 0.829 29 H 0.065 0.935 30 H 0.029 0.971 31 H 0.340 0.660 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.897 9.102 -5.020 15.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.248 5.248 3 C 0.001 3.999 4 C -0.074 4.074 5 C -0.300 4.300 6 C -0.101 4.101 7 N -0.193 5.193 8 H 0.279 0.721 9 N -0.086 5.086 10 C -0.096 4.096 11 C 0.179 3.821 12 H 0.072 0.928 13 O -0.352 6.352 14 C -0.613 4.613 15 H 0.072 0.928 16 C -0.126 4.126 17 N -0.493 5.493 18 Si 0.715 3.285 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.199 1.199 22 H 0.035 0.965 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.065 0.935 26 H 0.115 0.885 27 H 0.160 0.840 28 H 0.188 0.812 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.183 0.817 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.174 8.909 -6.285 14.913 hybrid contribution -0.933 -0.085 1.670 1.915 sum -11.107 8.825 -4.616 14.918 Atomic orbital electron populations 1.22405 0.88948 1.01152 0.99775 1.61911 1.06120 1.11603 1.45178 1.20434 1.02180 0.88121 0.89148 1.22280 0.93521 0.96592 0.95003 1.21443 1.03293 1.08321 0.96993 1.22471 0.92615 1.00257 0.94739 1.46484 1.20192 1.39895 1.12691 0.72137 1.77558 1.19534 1.13888 0.97665 1.23132 1.01088 0.96200 0.89222 1.19315 0.86620 0.91943 0.84191 0.92837 1.86600 1.75948 1.31865 1.40809 1.21673 0.96077 1.39391 1.04176 0.92768 1.25025 0.96922 0.95230 0.95450 1.70099 1.06033 1.44106 1.29019 0.86700 0.78241 0.80321 0.83237 1.20573 1.21180 1.19915 0.96516 0.92005 0.92034 0.93536 0.88490 0.84021 0.81199 0.91697 0.95277 0.81718 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.28 60.07 0.56 0.96 16 2 N -0.52 -10.10 4.60 -244.36 -1.12 -11.23 16 3 C 0.13 2.39 5.37 -4.97 -0.03 2.37 16 4 C 0.09 1.61 5.92 -82.41 -0.49 1.13 16 5 C -0.27 -3.61 9.80 -40.01 -0.39 -4.00 16 6 C 0.05 0.51 11.99 -17.22 -0.21 0.30 16 7 N -0.48 -6.22 7.36 30.45 0.22 -6.00 16 8 H 0.44 4.01 8.96 -182.60 -1.64 2.38 16 9 N -0.26 -4.78 12.70 33.67 0.43 -4.35 16 10 C 0.03 0.65 4.57 -3.82 -0.02 0.64 16 11 C 0.24 6.20 2.85 -27.88 -0.08 6.12 16 12 H 0.05 1.54 6.55 -51.93 -0.34 1.20 16 13 O -0.55 -15.08 12.62 -35.23 -0.44 -15.53 16 14 C -0.57 -16.02 8.76 -34.44 -0.30 -16.32 16 15 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 16 C 0.08 2.28 5.40 -17.82 -0.10 2.18 16 17 N -0.86 -26.00 12.83 55.43 0.71 -25.29 16 18 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H 0.02 0.23 8.13 -51.93 -0.42 -0.19 16 23 H 0.06 0.93 6.66 -51.93 -0.35 0.58 16 24 H 0.06 0.92 7.96 -51.93 -0.41 0.51 16 25 H 0.05 0.75 8.11 -51.93 -0.42 0.33 16 26 H 0.10 2.03 6.38 -51.93 -0.33 1.70 16 27 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 28 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.06 1.33 7.87 -51.93 -0.41 0.92 16 30 H 0.03 0.60 8.05 -51.93 -0.42 0.18 16 31 H 0.34 8.36 9.04 45.56 0.41 8.77 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 274.80 15.07 4.14 4.14 Total: -1.00 -34.09 274.80 -6.85 -40.94 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -4.71 Total: 7.53 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -1.05 Total: -6.63 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: 0.24 Total: -46.87 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.44 Total: -15.53 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -34.09 -6.85 -40.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929625621.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.202 kcal (2) G-P(sol) polarization free energy of solvation -34.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds