Wall clock time and date at job start Mon Mar 30 2020 20:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.39010 * 126.77118 * 2 1 4 4 C 1.41488 * 126.02253 * 0.03799 * 3 2 1 5 5 H 1.08000 * 120.00479 * 359.72274 * 4 3 2 6 6 C 1.39745 * 120.00123 * 179.97438 * 4 3 2 7 7 N 1.30983 * 119.99866 * 359.72068 * 6 4 3 8 8 Si 1.86798 * 119.99961 * 179.72636 * 6 4 3 9 9 H 1.48498 * 109.47416 * 59.99826 * 8 6 4 10 10 H 1.48508 * 109.46609 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46903 * 299.99411 * 8 6 4 12 12 N 1.34844 * 107.95770 * 180.29749 * 3 2 1 13 13 N 1.28674 * 109.63153 * 359.55606 * 12 3 2 14 14 N 1.35016 * 126.76933 * 180.02562 * 2 1 3 15 15 C 1.46499 * 126.49317 * 359.96914 * 14 2 1 16 16 C 1.53001 * 109.47316 * 89.99754 * 15 14 2 17 17 C 1.52997 * 109.47138 * 180.02562 * 16 15 14 18 18 H 1.09004 * 109.47102 * 304.99845 * 17 16 15 19 19 C 1.53006 * 109.47437 * 184.99996 * 17 16 15 20 20 O 1.42901 * 109.47514 * 64.99864 * 17 16 15 21 21 H 1.08998 * 109.46991 * 89.97427 * 1 2 3 22 22 H 1.08998 * 109.46977 * 209.97370 * 1 2 3 23 23 H 1.08998 * 109.46652 * 329.97327 * 1 2 3 24 24 H 0.97000 * 120.00385 * 179.97438 * 7 6 4 25 25 H 1.08997 * 109.47331 * 209.99527 * 15 14 2 26 26 H 1.09005 * 109.47020 * 329.99543 * 15 14 2 27 27 H 1.08998 * 109.46890 * 299.99606 * 16 15 14 28 28 H 1.08993 * 109.47562 * 59.99754 * 16 15 14 29 29 H 1.08996 * 109.46681 * 59.99662 * 19 17 16 30 30 H 1.08999 * 109.47034 * 179.97438 * 19 17 16 31 31 H 1.08999 * 109.46430 * 299.99864 * 19 17 16 32 32 H 0.96699 * 114.00088 * 59.99907 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3392 1.1135 0.0000 4 6 1.9207 2.4651 0.0008 5 1 0.8675 2.7043 -0.0031 6 6 2.8701 3.4906 0.0012 7 7 4.1474 3.2005 0.0064 8 14 2.3174 5.2749 -0.0055 9 1 1.4982 5.5440 1.2034 10 1 3.5085 6.1619 -0.0045 11 1 1.5065 5.5373 -1.2216 12 7 3.6156 0.6787 -0.0067 13 7 3.6340 -0.6079 -0.0013 14 7 2.3153 -1.0815 -0.0005 15 6 1.8934 -2.4845 -0.0005 16 6 1.7458 -2.9727 -1.4430 17 6 1.3046 -4.4377 -1.4429 18 1 2.0061 -5.0284 -0.8537 19 6 1.2774 -4.9623 -2.8800 20 8 -0.0017 -4.5418 -0.8731 21 1 -0.3633 0.0005 -1.0277 22 1 -0.3633 -0.8902 0.5134 23 1 -0.3632 0.8898 0.5143 24 1 4.8064 3.9123 0.0064 25 1 2.6413 -3.0888 0.5129 26 1 0.9367 -2.5762 0.5139 27 1 0.9979 -2.3685 -1.9563 28 1 2.7024 -2.8810 -1.9573 29 1 2.2738 -4.8829 -3.3146 30 1 0.9635 -6.0061 -2.8798 31 1 0.5759 -4.3715 -3.4690 32 1 -0.6788 -4.0399 -1.3472 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958541095.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:46:21 Heat of formation + Delta-G solvation = 19.928326 kcal Electronic energy + Delta-G solvation = -15415.080400 eV Core-core repulsion = 12798.146485 eV Total energy + Delta-G solvation = -2616.933915 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.94895 -37.97992 -34.21461 -33.09437 -31.71897 -30.68660 -28.51398 -26.90305 -24.49293 -23.71408 -21.53333 -20.23223 -18.97176 -17.10817 -16.46762 -15.94872 -15.14695 -14.86367 -14.26100 -13.77700 -13.62279 -12.97031 -12.91540 -12.57866 -12.15349 -12.06358 -11.78113 -11.68447 -11.08594 -11.03560 -10.97249 -10.84802 -10.60677 -10.31448 -10.14377 -9.69794 -9.23698 -8.83123 -8.36879 -7.34529 -6.32428 -4.11830 2.85917 3.20065 3.22415 3.24240 3.63669 4.16675 4.27815 4.35323 4.74886 4.91116 5.02011 5.22062 5.44583 5.56458 5.57315 5.63750 5.72526 5.92834 5.98487 6.02707 6.09741 6.22776 6.36080 6.63041 6.95834 7.18765 7.45770 7.52217 7.56910 8.22074 8.46117 8.87520 9.12920 10.25787 10.64590 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.052193 B = 0.006113 C = 0.005809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.340791 B = 4579.349849 C = 4818.996235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.119 4.119 3 C 0.150 3.850 4 C -0.452 4.452 5 H 0.080 0.920 6 C 0.073 3.927 7 N -0.778 5.778 8 Si 0.907 3.093 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.269 1.269 12 N -0.229 5.229 13 N -0.137 5.137 14 N -0.378 5.378 15 C 0.143 3.857 16 C -0.165 4.165 17 C 0.105 3.895 18 H 0.100 0.900 19 C -0.184 4.184 20 O -0.565 6.565 21 H 0.049 0.951 22 H 0.043 0.957 23 H 0.070 0.930 24 H 0.272 0.728 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.687 -10.361 -3.452 13.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.250 4.250 3 C 0.020 3.980 4 C -0.488 4.488 5 H 0.098 0.902 6 C -0.146 4.146 7 N -0.405 5.405 8 Si 0.732 3.268 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.194 1.194 12 N -0.101 5.101 13 N -0.113 5.113 14 N -0.174 5.174 15 C 0.019 3.981 16 C -0.204 4.204 17 C 0.046 3.954 18 H 0.118 0.882 19 C -0.241 4.241 20 O -0.370 6.370 21 H 0.068 0.932 22 H 0.062 0.938 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.099 0.901 26 H 0.103 0.897 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -5.607 -11.054 -3.018 12.757 hybrid contribution -1.499 1.386 -0.511 2.105 sum -7.107 -9.668 -3.530 12.507 Atomic orbital electron populations 1.19785 0.88850 1.01236 1.00397 1.21497 0.93641 0.87543 1.22343 1.19005 0.85982 0.93392 0.99650 1.18485 0.93803 0.87631 1.48925 0.90207 1.25778 0.94605 1.00650 0.93558 1.70010 1.00763 1.33834 1.35875 0.86416 0.78662 0.82308 0.79390 1.19343 1.20640 1.19382 1.75076 1.20172 0.99584 1.15229 1.81470 0.96878 1.07237 1.25739 1.49524 1.06844 1.04815 1.56190 1.21272 1.00785 0.79567 0.96512 1.22712 1.03449 0.96258 0.98022 1.21882 0.84771 0.94824 0.93972 0.88163 1.22482 1.02911 1.01729 0.97012 1.86566 1.18339 1.74509 1.57628 0.93243 0.93771 0.91077 0.91761 0.90053 0.89681 0.91078 0.90233 0.91448 0.91872 0.92280 0.77796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.80 9.94 36.01 0.36 -0.44 16 2 C -0.12 -2.83 7.11 -80.90 -0.58 -3.41 16 3 C 0.15 4.25 6.72 -85.02 -0.57 3.68 16 4 C -0.45 -12.59 9.11 -37.78 -0.34 -12.93 16 5 H 0.08 2.04 7.30 -52.49 -0.38 1.66 16 6 C 0.07 1.98 5.49 -17.35 -0.10 1.88 16 7 N -0.78 -22.53 11.92 55.54 0.66 -21.87 16 8 Si 0.91 19.86 29.56 -169.99 -5.02 14.83 16 9 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 12 N -0.23 -6.85 10.56 32.05 0.34 -6.51 16 13 N -0.14 -3.68 13.74 60.35 0.83 -2.86 16 14 N -0.38 -8.52 3.63 -56.17 -0.20 -8.72 16 15 C 0.14 2.34 6.20 -4.04 -0.03 2.31 16 16 C -0.17 -2.23 5.22 -26.73 -0.14 -2.37 16 17 C 0.11 1.11 3.59 -26.73 -0.10 1.02 16 18 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 19 C -0.18 -1.64 9.54 37.16 0.35 -1.29 16 20 O -0.56 -6.12 12.87 -35.23 -0.45 -6.58 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.04 0.69 7.20 -51.93 -0.37 0.31 16 23 H 0.07 1.30 7.56 -51.93 -0.39 0.91 16 24 H 0.27 7.23 8.30 -40.82 -0.34 6.89 16 25 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 26 H 0.08 1.28 6.85 -51.93 -0.36 0.92 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.37 2.90 9.05 45.56 0.41 3.31 16 LS Contribution 277.91 15.07 4.19 4.19 Total: -1.00 -33.47 277.91 -4.41 -37.88 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -3.61 Total: 1.19 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -1.13 Total: -11.55 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 1.63 Total: -39.96 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.45 Total: -6.58 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.47 -4.41 -37.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958541095.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.808 kcal (2) G-P(sol) polarization free energy of solvation -33.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds