Wall clock time and date at job start Mon Mar 30 2020 20:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.39010 * 126.77118 * 2 1 4 4 C 1.41488 * 126.02253 * 0.03799 * 3 2 1 5 5 H 1.08000 * 120.00479 * 359.72274 * 4 3 2 6 6 C 1.39745 * 120.00123 * 179.97438 * 4 3 2 7 7 N 1.30983 * 119.99866 * 359.72068 * 6 4 3 8 8 Si 1.86798 * 119.99961 * 179.72636 * 6 4 3 9 9 H 1.48498 * 109.47416 * 59.99826 * 8 6 4 10 10 H 1.48508 * 109.46609 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46903 * 299.99411 * 8 6 4 12 12 N 1.34844 * 107.95770 * 180.29749 * 3 2 1 13 13 N 1.28674 * 109.63153 * 359.55606 * 12 3 2 14 14 N 1.35016 * 126.76933 * 180.02562 * 2 1 3 15 15 C 1.46499 * 126.49317 * 359.96914 * 14 2 1 16 16 C 1.53001 * 109.47316 * 89.99754 * 15 14 2 17 17 C 1.52997 * 109.47138 * 180.02562 * 16 15 14 18 18 H 1.09004 * 109.47102 * 304.99845 * 17 16 15 19 19 C 1.53006 * 109.47437 * 184.99996 * 17 16 15 20 20 O 1.42901 * 109.47514 * 64.99864 * 17 16 15 21 21 H 1.08998 * 109.46991 * 89.97427 * 1 2 3 22 22 H 1.08998 * 109.46977 * 209.97370 * 1 2 3 23 23 H 1.08998 * 109.46652 * 329.97327 * 1 2 3 24 24 H 0.97000 * 120.00385 * 179.97438 * 7 6 4 25 25 H 1.08997 * 109.47331 * 209.99527 * 15 14 2 26 26 H 1.09005 * 109.47020 * 329.99543 * 15 14 2 27 27 H 1.08998 * 109.46890 * 299.99606 * 16 15 14 28 28 H 1.08993 * 109.47562 * 59.99754 * 16 15 14 29 29 H 1.08996 * 109.46681 * 59.99662 * 19 17 16 30 30 H 1.08999 * 109.47034 * 179.97438 * 19 17 16 31 31 H 1.08999 * 109.46430 * 299.99864 * 19 17 16 32 32 H 0.96699 * 114.00088 * 59.99907 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3392 1.1135 0.0000 4 6 1.9207 2.4651 0.0008 5 1 0.8675 2.7043 -0.0031 6 6 2.8701 3.4906 0.0012 7 7 4.1474 3.2005 0.0064 8 14 2.3174 5.2749 -0.0055 9 1 1.4982 5.5440 1.2034 10 1 3.5085 6.1619 -0.0045 11 1 1.5065 5.5373 -1.2216 12 7 3.6156 0.6787 -0.0067 13 7 3.6340 -0.6079 -0.0013 14 7 2.3153 -1.0815 -0.0005 15 6 1.8934 -2.4845 -0.0005 16 6 1.7458 -2.9727 -1.4430 17 6 1.3046 -4.4377 -1.4429 18 1 2.0061 -5.0284 -0.8537 19 6 1.2774 -4.9623 -2.8800 20 8 -0.0017 -4.5418 -0.8731 21 1 -0.3633 0.0005 -1.0277 22 1 -0.3633 -0.8902 0.5134 23 1 -0.3632 0.8898 0.5143 24 1 4.8064 3.9123 0.0064 25 1 2.6413 -3.0888 0.5129 26 1 0.9367 -2.5762 0.5139 27 1 0.9979 -2.3685 -1.9563 28 1 2.7024 -2.8810 -1.9573 29 1 2.2738 -4.8829 -3.3146 30 1 0.9635 -6.0061 -2.8798 31 1 0.5759 -4.3715 -3.4690 32 1 -0.6788 -4.0399 -1.3472 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958541095.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:46:21 Heat of formation + Delta-G solvation = -5.921046 kcal Electronic energy + Delta-G solvation = -15416.201313 eV Core-core repulsion = 12798.146485 eV Total energy + Delta-G solvation = -2618.054827 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.86330 -38.91994 -35.83361 -34.92785 -33.12060 -32.17698 -29.90117 -28.61064 -26.38993 -25.07989 -22.49501 -22.16687 -20.73549 -19.01466 -17.40971 -16.97128 -16.84710 -16.60607 -15.88820 -15.13381 -14.74725 -14.55722 -14.31019 -14.04944 -13.54038 -13.33181 -13.00148 -12.85652 -12.78270 -12.70350 -12.55515 -12.18293 -12.01140 -11.74355 -11.61377 -11.25331 -11.01749 -10.77789 -10.20066 -9.34722 -8.28921 -6.18017 0.99549 1.44916 1.47814 1.57960 2.00097 2.33763 2.35292 3.46118 3.53473 3.72732 3.86656 3.95745 4.26774 4.33598 4.36538 4.44678 4.51452 4.63050 4.89027 4.91638 4.98399 5.03655 5.15964 5.21837 5.25612 5.30810 5.54292 5.64068 6.40309 6.45979 6.86081 6.90102 7.10065 8.28692 8.70890 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.052193 B = 0.006113 C = 0.005809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.340791 B = 4579.349849 C = 4818.996235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.089 4.089 3 C 0.098 3.902 4 C -0.482 4.482 5 H 0.095 0.905 6 C 0.018 3.982 7 N -0.831 5.831 8 Si 0.989 3.011 9 H -0.258 1.258 10 H -0.280 1.280 11 H -0.257 1.257 12 N -0.284 5.284 13 N -0.179 5.179 14 N -0.360 5.360 15 C 0.129 3.871 16 C -0.153 4.153 17 C 0.117 3.883 18 H 0.103 0.897 19 C -0.180 4.180 20 O -0.574 6.574 21 H 0.074 0.926 22 H 0.080 0.920 23 H 0.073 0.927 24 H 0.272 0.728 25 H 0.089 0.911 26 H 0.110 0.890 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.503 -11.255 -3.784 15.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.224 4.224 3 C -0.035 4.035 4 C -0.519 4.519 5 H 0.113 0.887 6 C -0.195 4.195 7 N -0.460 5.460 8 Si 0.810 3.190 9 H -0.182 1.182 10 H -0.206 1.206 11 H -0.182 1.182 12 N -0.153 5.153 13 N -0.154 5.154 14 N -0.154 5.154 15 C 0.007 3.993 16 C -0.193 4.193 17 C 0.057 3.943 18 H 0.121 0.879 19 C -0.237 4.237 20 O -0.381 6.381 21 H 0.093 0.907 22 H 0.098 0.902 23 H 0.092 0.908 24 H 0.082 0.918 25 H 0.107 0.893 26 H 0.128 0.872 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -8.413 -12.022 -3.357 15.053 hybrid contribution -0.784 1.414 -0.402 1.666 sum -9.197 -10.608 -3.759 14.534 Atomic orbital electron populations 1.20001 0.84519 1.03171 1.02550 1.22412 0.96071 0.86691 1.17261 1.19675 0.86601 0.95271 1.01918 1.18920 0.94733 0.88201 1.50063 0.88739 1.26804 0.94352 1.05705 0.92634 1.70188 1.02299 1.35291 1.38195 0.85175 0.78176 0.75708 0.79974 1.18190 1.20554 1.18170 1.75022 1.21818 1.00857 1.17618 1.81343 0.98840 1.06564 1.28689 1.50016 1.05760 1.07009 1.52651 1.21839 1.02009 0.76290 0.99134 1.22624 1.02755 0.98495 0.95386 1.21754 0.84932 0.92396 0.95207 0.87895 1.22436 1.03167 1.02374 0.95759 1.86549 1.18530 1.74858 1.58210 0.90729 0.90154 0.90821 0.91839 0.89307 0.87175 0.90906 0.91987 0.91555 0.90822 0.91606 0.76099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.44 9.94 71.24 0.71 -0.73 16 2 C -0.09 -4.13 7.11 42.26 0.30 -3.83 16 3 C 0.10 5.69 6.72 39.67 0.27 5.96 16 4 C -0.48 -27.22 9.11 23.44 0.21 -27.01 16 5 H 0.09 4.79 7.30 -2.91 -0.02 4.77 16 6 C 0.02 1.01 5.49 85.18 0.47 1.48 16 7 N -0.83 -50.27 11.92 21.80 0.26 -50.01 16 8 Si 0.99 41.28 29.56 68.60 2.03 43.30 16 9 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 10 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 12 N -0.28 -17.73 10.56 -52.52 -0.55 -18.29 16 13 N -0.18 -9.91 13.74 37.02 0.51 -9.41 16 14 N -0.36 -15.95 3.63 -331.63 -1.20 -17.15 16 15 C 0.13 3.92 6.20 86.38 0.54 4.45 16 16 C -0.15 -3.79 5.22 30.59 0.16 -3.63 16 17 C 0.12 2.12 3.59 30.60 0.11 2.23 16 18 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 19 C -0.18 -2.69 9.54 71.98 0.69 -2.01 16 20 O -0.57 -10.23 12.87 -148.98 -1.92 -12.15 16 21 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 22 H 0.08 2.09 7.20 -2.39 -0.02 2.08 16 23 H 0.07 2.46 7.56 -2.39 -0.02 2.44 16 24 H 0.27 15.18 8.30 -92.71 -0.77 14.41 16 25 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 26 H 0.11 2.86 6.85 -2.38 -0.02 2.84 16 27 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.39 4.38 9.05 -74.06 -0.67 3.71 16 Total: -1.00 -76.29 277.91 3.02 -73.27 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.45 Total: 13.51 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 3.45 Total: -23.08 kcal Atomic # 7 Polarization: -93.87 SS G_CDS: -0.99 Total: -94.86 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: -1.92 Total: -12.15 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.30 kcal Total: -76.29 3.02 -73.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958541095.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.351 kcal (2) G-P(sol) polarization free energy of solvation -76.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds