Wall clock time and date at job start Mon Mar 30 2020 20:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47117 * 2 1 4 4 H 1.09001 * 109.47232 * 305.45095 * 3 2 1 5 5 C 1.53001 * 109.47101 * 185.45616 * 3 2 1 6 6 O 1.42898 * 109.47363 * 63.70081 * 5 3 2 7 7 N 1.46498 * 109.47327 * 65.45347 * 3 2 1 8 8 N 1.40127 * 126.49611 * 60.02607 * 7 3 2 9 9 N 1.28668 * 108.93695 * 179.97438 * 8 7 3 10 10 C 1.34840 * 109.63822 * 0.02562 * 9 8 7 11 11 C 1.41489 * 126.02314 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99953 * 179.97438 * 11 10 9 13 13 C 1.39737 * 119.99856 * 359.97438 * 11 10 9 14 14 N 1.30978 * 120.00201 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99775 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47139 * 59.99763 * 15 13 11 17 17 H 1.48503 * 109.46715 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47047 * 299.99363 * 15 13 11 19 19 C 1.35027 * 126.49159 * 240.02135 * 7 3 2 20 20 C 1.50696 * 126.77030 * 0.02562 * 19 7 3 21 21 H 1.09002 * 109.47479 * 174.65693 * 1 2 3 22 22 H 1.09004 * 109.47621 * 294.66544 * 1 2 3 23 23 H 1.09002 * 109.47122 * 54.66158 * 1 2 3 24 24 H 1.08991 * 109.47229 * 239.99692 * 2 1 3 25 25 H 1.09006 * 109.46555 * 119.99663 * 2 1 3 26 26 H 1.08997 * 109.47212 * 183.71057 * 5 3 2 27 27 H 1.09004 * 109.47005 * 303.70420 * 5 3 2 28 28 H 0.96700 * 114.00058 * 180.02562 * 6 5 3 29 29 H 0.97001 * 120.00311 * 180.02562 * 14 13 11 30 30 H 1.09004 * 109.46794 * 269.96853 * 20 19 7 31 31 H 1.09001 * 109.47508 * 29.97102 * 20 19 7 32 32 H 1.09001 * 109.47220 * 149.97559 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5991 1.9837 -0.8371 5 6 3.5638 1.4446 -0.1372 6 8 3.9292 0.8870 -1.4011 7 7 1.6618 2.0941 1.2564 8 7 2.0332 1.6948 2.5471 9 7 1.5148 2.5062 3.4006 10 6 0.8005 3.4491 2.7535 11 6 0.0869 4.5120 3.3561 12 1 -0.4548 5.2156 2.7414 13 6 0.0830 4.6512 4.7465 14 7 0.7395 3.7975 5.4920 15 14 -0.8585 6.0549 5.5420 16 1 -2.2968 5.9495 5.1879 17 1 -0.7055 5.9801 7.0172 18 1 -0.3219 7.3504 5.0533 19 6 0.8894 3.1936 1.3899 20 6 0.2497 3.9869 0.2798 21 1 -0.3634 -1.0232 -0.0957 22 1 -0.3634 0.4289 0.9339 23 1 -0.3633 0.5944 -0.8383 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.9331 2.4680 -0.0710 27 1 4.0015 0.8480 0.6633 28 1 4.8831 0.8563 -1.5565 29 1 0.7366 3.8939 6.4572 30 1 0.9316 4.7730 -0.0446 31 1 0.0310 3.3265 -0.5594 32 1 -0.6762 4.4351 0.6403 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958541515.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:46:44 Heat of formation + Delta-G solvation = 0.463088 kcal Electronic energy + Delta-G solvation = -15823.448512 eV Core-core repulsion = 13205.670522 eV Total energy + Delta-G solvation = -2617.777991 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.94788 -38.58445 -36.21405 -35.11268 -33.41018 -32.03094 -29.73327 -28.51486 -26.34533 -24.72163 -23.59188 -21.59978 -20.57703 -18.90421 -18.27729 -16.85859 -16.77837 -16.47840 -15.89670 -15.22859 -14.87407 -14.61907 -14.45145 -13.91406 -13.56329 -13.49725 -13.14060 -12.84978 -12.80073 -12.57744 -12.35033 -12.14765 -12.01168 -11.95534 -11.54227 -11.16392 -11.02800 -10.77967 -10.24586 -9.33094 -8.28909 -6.17174 0.98829 1.44826 1.47666 1.57409 1.83134 2.34799 2.35030 3.23964 3.53636 3.60983 3.92764 3.95896 4.21484 4.34011 4.37736 4.45840 4.48511 4.64088 4.80278 4.90943 4.96914 5.00185 5.07219 5.21997 5.24182 5.33420 5.55367 5.64707 6.40694 6.45229 6.76244 6.90252 7.10572 8.29519 8.70665 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.043204 B = 0.007318 C = 0.007192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.930230 B = 3825.392473 C = 3892.352594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C 0.155 3.845 4 H 0.117 0.883 5 C 0.085 3.915 6 O -0.569 6.569 7 N -0.350 5.350 8 N -0.164 5.164 9 N -0.281 5.281 10 C 0.104 3.896 11 C -0.483 4.483 12 H 0.093 0.907 13 C 0.020 3.980 14 N -0.829 5.829 15 Si 0.986 3.014 16 H -0.259 1.259 17 H -0.280 1.280 18 H -0.258 1.258 19 C -0.089 4.089 20 C -0.047 4.047 21 H 0.073 0.927 22 H 0.017 0.983 23 H 0.070 0.930 24 H 0.108 0.892 25 H 0.051 0.949 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.404 0.596 29 H 0.272 0.728 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.313 -1.931 -13.160 13.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C 0.052 3.948 4 H 0.135 0.865 5 C 0.005 3.995 6 O -0.377 6.377 7 N -0.146 5.146 8 N -0.140 5.140 9 N -0.150 5.150 10 C -0.029 4.029 11 C -0.519 4.519 12 H 0.111 0.889 13 C -0.194 4.194 14 N -0.458 5.458 15 Si 0.808 3.192 16 H -0.183 1.183 17 H -0.205 1.205 18 H -0.182 1.182 19 C -0.224 4.224 20 C -0.106 4.106 21 H 0.092 0.908 22 H 0.036 0.964 23 H 0.089 0.911 24 H 0.126 0.874 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.255 0.745 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.587 -3.157 -12.186 12.688 hybrid contribution -0.075 1.137 0.387 1.203 sum 1.513 -2.020 -11.799 12.066 Atomic orbital electron populations 1.21699 0.95181 1.02541 1.00776 1.21768 0.96633 0.93866 1.03326 1.21292 0.95410 0.95561 0.82558 0.86509 1.22042 0.93605 0.97514 0.86302 1.86306 1.31176 1.85175 1.35036 1.49756 1.36802 1.20924 1.07100 1.81324 1.25256 1.23102 0.84270 1.75042 1.11734 1.04510 1.23741 1.19571 0.98674 0.96255 0.88380 1.18916 1.30201 1.10509 0.92310 0.88854 1.26766 0.95504 0.99129 0.97975 1.70175 1.35095 1.34566 1.05927 0.85205 0.79106 0.78146 0.76772 1.18288 1.20527 1.18234 1.22303 1.07063 0.95651 0.97375 1.20014 0.99889 0.97705 0.92956 0.90837 0.96372 0.91069 0.87407 0.92995 0.93716 0.93419 0.74484 0.91831 0.90941 0.90460 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.18 9.74 71.98 0.70 -3.48 16 2 C -0.12 -3.45 5.50 30.59 0.17 -3.28 16 3 C 0.15 4.96 2.78 44.99 0.13 5.08 16 4 H 0.12 3.27 6.80 -2.39 -0.02 3.26 16 5 C 0.08 2.40 6.71 71.98 0.48 2.88 16 6 O -0.57 -12.16 13.05 -148.98 -1.94 -14.10 16 7 N -0.35 -15.24 2.86 -311.28 -0.89 -16.13 16 8 N -0.16 -8.80 13.62 37.02 0.50 -8.30 16 9 N -0.28 -17.16 10.55 -52.51 -0.55 -17.71 16 10 C 0.10 5.92 6.72 39.67 0.27 6.18 16 11 C -0.48 -27.08 9.11 23.43 0.21 -26.87 16 12 H 0.09 4.73 7.30 -2.91 -0.02 4.71 16 13 C 0.02 1.08 5.49 85.18 0.47 1.55 16 14 N -0.83 -49.67 11.92 21.79 0.26 -49.41 16 15 Si 0.99 41.20 29.56 68.60 2.03 43.23 16 16 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 17 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 18 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 19 C -0.09 -4.13 7.11 42.25 0.30 -3.83 16 20 C -0.05 -1.59 9.77 71.23 0.70 -0.89 16 21 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 22 H 0.02 0.65 7.92 -2.38 -0.02 0.63 16 23 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.11 2.58 7.64 -2.39 -0.02 2.56 16 25 H 0.05 1.75 8.14 -2.38 -0.02 1.74 16 26 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.40 4.72 9.12 -74.06 -0.68 4.05 16 29 H 0.27 15.05 8.30 -92.71 -0.77 14.29 16 30 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 31 H 0.08 2.11 7.20 -2.39 -0.02 2.09 16 32 H 0.08 2.57 7.56 -2.39 -0.02 2.56 16 Total: -1.00 -73.82 276.52 3.28 -70.55 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.45 Total: 14.53 kcal Atomic # 6 Polarization: -26.08 SS G_CDS: 3.42 Total: -22.65 kcal Atomic # 7 Polarization: -90.87 SS G_CDS: -0.68 Total: -91.54 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -1.94 Total: -14.10 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -73.82 3.28 -70.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958541515.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.009 kcal (2) G-P(sol) polarization free energy of solvation -73.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds