Wall clock time and date at job start Mon Mar 30 2020 20:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47405 * 2 1 4 4 H 1.09001 * 109.46910 * 304.99677 * 3 2 1 5 5 C 1.52998 * 109.47095 * 64.99945 * 3 2 1 6 6 O 1.42898 * 109.47029 * 185.00261 * 5 3 2 7 7 N 1.46494 * 109.47214 * 185.00183 * 3 2 1 8 8 N 1.40133 * 126.49158 * 299.97404 * 7 3 2 9 9 N 1.28672 * 108.93087 * 180.02562 * 8 7 3 10 10 C 1.34840 * 109.64009 * 359.97438 * 9 8 7 11 11 C 1.41495 * 126.02215 * 179.97438 * 10 9 8 12 12 H 1.07992 * 120.00047 * 170.81455 * 11 10 9 13 13 C 1.39738 * 119.99922 * 350.80956 * 11 10 9 14 14 N 1.30977 * 120.00201 * 167.55927 * 13 11 10 15 15 Si 1.86806 * 120.00083 * 347.28569 * 13 11 10 16 16 H 1.48503 * 109.47042 * 89.99631 * 15 13 11 17 17 H 1.48493 * 109.47316 * 210.00053 * 15 13 11 18 18 H 1.48502 * 109.47109 * 330.00193 * 15 13 11 19 19 C 1.35025 * 126.49777 * 120.29396 * 7 3 2 20 20 C 1.50703 * 126.76724 * 359.96429 * 19 7 3 21 21 H 1.09002 * 109.47015 * 60.00247 * 1 2 3 22 22 H 1.09004 * 109.47086 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47160 * 299.99683 * 1 2 3 24 24 H 1.09004 * 109.47329 * 239.99637 * 2 1 3 25 25 H 1.09002 * 109.46964 * 120.00308 * 2 1 3 26 26 H 1.09000 * 109.46682 * 305.00017 * 5 3 2 27 27 H 1.08996 * 109.46823 * 65.00109 * 5 3 2 28 28 H 0.96699 * 113.99730 * 179.97438 * 6 5 3 29 29 H 0.97003 * 120.00230 * 1.50925 * 14 13 11 30 30 H 1.08995 * 109.47175 * 270.20310 * 20 19 7 31 31 H 1.09002 * 109.47337 * 30.20089 * 20 19 7 32 32 H 1.08999 * 109.46946 * 150.20057 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1265 1.3073 6 8 2.0090 3.5049 1.2592 7 7 3.5000 1.4442 -0.1204 8 7 4.4101 0.8542 0.7669 9 7 5.6053 1.0597 0.3370 10 6 5.5589 1.7665 -0.8104 11 6 6.6731 2.1831 -1.5767 12 1 6.5242 2.6156 -2.5550 13 6 7.9659 2.0350 -1.0676 14 7 9.0014 2.1876 -1.8550 15 14 8.2178 1.6268 0.7378 16 1 8.2475 0.1523 0.9125 17 1 9.5039 2.2062 1.2017 18 1 7.1019 2.1971 1.5346 19 6 4.2240 2.0197 -1.1042 20 6 3.6900 2.7824 -2.2891 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8932 -0.5139 0.8900 26 1 0.5563 2.0470 1.4400 27 1 2.1408 1.6419 2.1425 28 1 1.7819 4.0020 2.0570 29 1 8.8715 2.4250 -2.7866 30 1 3.5147 2.0937 -3.1155 31 1 2.7532 3.2684 -2.0163 32 1 4.4158 3.5369 -2.5926 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958541516.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:46:46 Heat of formation + Delta-G solvation = -10.614328 kcal Electronic energy + Delta-G solvation = -15909.622622 eV Core-core repulsion = 13291.364279 eV Total energy + Delta-G solvation = -2618.258343 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.25077 -38.68357 -36.30816 -35.42377 -33.84264 -32.45288 -29.52823 -28.50664 -26.05439 -25.46425 -23.45152 -21.39497 -20.98832 -19.61072 -18.50053 -17.71641 -16.58776 -16.16301 -15.75213 -15.30539 -15.11440 -14.70979 -14.35006 -14.20401 -13.90035 -13.72958 -13.41089 -12.99625 -12.84371 -12.71332 -12.51080 -12.35987 -12.04509 -11.67397 -11.53033 -11.12064 -10.98925 -10.81136 -10.36372 -9.60160 -9.15342 -6.40194 0.77070 1.46100 1.50579 1.72441 1.95995 2.02608 2.41215 3.03658 3.26789 3.72580 3.76933 4.02742 4.10092 4.24672 4.30659 4.35353 4.39552 4.57501 4.71438 4.75679 4.76359 5.00031 5.05927 5.08594 5.15211 5.34517 5.39492 5.69375 6.17365 6.25451 6.45904 6.79168 6.89995 7.82820 8.24875 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.037151 B = 0.008597 C = 0.008224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.490731 B = 3256.229367 C = 3403.838999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.123 4.123 3 C 0.146 3.854 4 H 0.118 0.882 5 C 0.070 3.930 6 O -0.591 6.591 7 N -0.331 5.331 8 N -0.135 5.135 9 N -0.345 5.345 10 C 0.095 3.905 11 C -0.524 4.524 12 H 0.068 0.932 13 C 0.017 3.983 14 N -0.869 5.869 15 Si 1.136 2.864 16 H -0.286 1.286 17 H -0.298 1.298 18 H -0.281 1.281 19 C -0.069 4.069 20 C -0.047 4.047 21 H 0.070 0.930 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.109 0.891 27 H 0.043 0.957 28 H 0.398 0.602 29 H 0.274 0.726 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.853 -0.060 3.665 20.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.162 4.162 3 C 0.044 3.956 4 H 0.136 0.864 5 C -0.008 4.008 6 O -0.400 6.400 7 N -0.126 5.126 8 N -0.110 5.110 9 N -0.215 5.215 10 C -0.038 4.038 11 C -0.562 4.562 12 H 0.086 0.914 13 C -0.194 4.194 14 N -0.498 5.498 15 Si 0.965 3.035 16 H -0.212 1.212 17 H -0.227 1.227 18 H -0.207 1.207 19 C -0.204 4.204 20 C -0.106 4.106 21 H 0.089 0.911 22 H 0.092 0.908 23 H 0.094 0.906 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.126 0.874 27 H 0.062 0.938 28 H 0.248 0.752 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.340 -1.368 5.501 19.197 hybrid contribution -0.990 1.002 -1.839 2.316 sum -19.331 -0.366 3.663 19.678 Atomic orbital electron populations 1.21803 0.91054 1.03670 1.03491 1.21768 0.98939 0.92492 1.02958 1.21885 0.73660 0.99154 1.00889 0.86400 1.22636 1.00793 0.81926 0.95473 1.86498 1.86096 1.21857 1.45555 1.49898 1.07616 1.38036 1.17061 1.81102 0.92223 1.22121 1.15541 1.73881 1.14653 1.19437 1.13522 1.19459 0.93447 0.98312 0.92546 1.19588 0.91072 1.41931 1.03576 0.91368 1.27659 0.91651 0.91018 1.09113 1.70720 1.33372 1.37761 1.07908 0.82454 0.73125 0.77282 0.70647 1.21228 1.22657 1.20746 1.22246 0.91376 1.08831 0.97969 1.20002 1.00761 0.98126 0.91727 0.91117 0.90793 0.90609 0.92159 0.91558 0.87368 0.93846 0.75188 0.91560 0.90637 0.89941 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.67 71.98 0.70 -1.23 16 2 C -0.12 -2.83 5.67 30.59 0.17 -2.66 16 3 C 0.15 4.09 2.81 44.99 0.13 4.21 16 4 H 0.12 2.90 6.81 -2.39 -0.02 2.88 16 5 C 0.07 1.65 6.48 71.98 0.47 2.12 16 6 O -0.59 -15.93 13.61 -148.98 -2.03 -17.95 16 7 N -0.33 -13.79 3.23 -311.29 -1.01 -14.80 16 8 N -0.14 -6.72 13.62 37.02 0.50 -6.22 16 9 N -0.35 -19.54 7.70 -52.52 -0.40 -19.94 16 10 C 0.10 5.35 6.37 39.67 0.25 5.60 16 11 C -0.52 -31.20 9.46 23.44 0.22 -30.98 16 12 H 0.07 4.05 7.67 -2.91 -0.02 4.03 16 13 C 0.02 1.05 5.51 85.18 0.47 1.52 16 14 N -0.87 -52.56 13.67 21.79 0.30 -52.27 16 15 Si 1.14 61.06 26.30 68.60 1.80 62.86 16 16 H -0.29 -15.29 7.11 99.48 0.71 -14.58 16 17 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 18 H -0.28 -15.47 6.38 99.48 0.63 -14.83 16 19 C -0.07 -3.18 7.11 42.25 0.30 -2.88 16 20 C -0.05 -1.68 9.76 71.24 0.70 -0.99 16 21 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 22 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 23 H 0.08 0.78 6.46 -2.39 -0.02 0.77 16 24 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 25 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 26 H 0.11 1.53 6.34 -2.39 -0.02 1.51 16 27 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.40 6.66 9.12 -74.06 -0.68 5.99 16 29 H 0.27 16.09 8.72 -92.71 -0.81 15.28 16 30 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.08 2.39 7.21 -2.39 -0.02 2.38 16 32 H 0.07 2.54 7.69 -2.39 -0.02 2.52 16 Total: -1.00 -76.55 270.46 2.91 -73.63 By element: Atomic # 1 Polarization: -0.36 SS G_CDS: 0.34 Total: -0.02 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: 3.40 Total: -25.29 kcal Atomic # 7 Polarization: -92.62 SS G_CDS: -0.61 Total: -93.23 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -2.03 Total: -17.95 kcal Atomic # 14 Polarization: 61.06 SS G_CDS: 1.80 Total: 62.86 kcal Total: -76.55 2.91 -73.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958541516.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.019 kcal (2) G-P(sol) polarization free energy of solvation -76.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds