Wall clock time and date at job start Mon Mar 30 2020 20:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46971 * 2 1 4 4 N 1.40124 * 126.49382 * 90.02853 * 3 2 1 5 5 N 1.28662 * 108.93709 * 179.97438 * 4 3 2 6 6 C 1.34844 * 109.63574 * 359.97438 * 5 4 3 7 7 C 1.41499 * 126.02217 * 179.74172 * 6 5 4 8 8 H 1.07993 * 120.00056 * 180.02562 * 7 6 5 9 9 C 1.39735 * 119.99825 * 0.02562 * 7 6 5 10 10 N 1.30989 * 120.00043 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00143 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46699 * 60.00250 * 11 9 7 13 13 H 1.48501 * 109.47501 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47262 * 300.00477 * 11 9 7 15 15 C 1.35023 * 126.49213 * 269.99698 * 3 2 1 16 16 C 1.50696 * 126.77116 * 0.06046 * 15 3 2 17 17 H 1.08998 * 109.47404 * 344.98208 * 16 15 3 18 18 C 1.53003 * 109.47115 * 104.98145 * 16 15 3 19 19 O 1.42894 * 109.47325 * 224.97772 * 16 15 3 20 20 C 1.42902 * 114.00569 * 150.00032 * 19 16 15 21 21 H 1.08993 * 109.47012 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47258 * 300.00173 * 1 2 3 23 23 H 1.09005 * 109.46902 * 60.00009 * 1 2 3 24 24 H 1.09002 * 109.46670 * 240.00272 * 2 1 3 25 25 H 1.08994 * 109.47297 * 119.99796 * 2 1 3 26 26 H 0.97005 * 119.99720 * 179.97438 * 10 9 7 27 27 H 1.09001 * 109.47396 * 59.99544 * 18 16 15 28 28 H 1.08997 * 109.47138 * 180.02562 * 18 16 15 29 29 H 1.09007 * 109.46903 * 299.99733 * 18 16 15 30 30 H 1.08990 * 109.47500 * 180.02562 * 20 19 16 31 31 H 1.09005 * 109.46817 * 300.00571 * 20 19 16 32 32 H 1.08997 * 109.46852 * 59.99607 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2966 2.1668 1.1265 5 7 2.7058 3.3232 0.7384 6 6 2.7224 3.3692 -0.6092 7 6 3.1092 4.4776 -1.3993 8 1 3.0847 4.4075 -2.4766 9 6 3.5228 5.6628 -0.7854 10 7 3.5530 5.7476 0.5214 11 14 4.0341 7.1257 -1.8284 12 1 2.8962 7.5440 -2.6859 13 1 4.4263 8.2518 -0.9433 14 1 5.1856 6.7445 -2.6851 15 6 2.2860 2.1383 -1.0855 16 6 2.1402 1.7296 -2.5286 17 1 2.0387 0.6461 -2.5909 18 6 0.8967 2.3934 -3.1236 19 8 3.2964 2.1424 -3.2598 20 6 3.6150 1.2990 -4.3684 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.8405 6.5703 0.9475 27 1 0.9982 3.4769 -3.0613 28 1 0.7911 2.0974 -4.1673 29 1 0.0147 2.0785 -2.5659 30 1 4.5044 1.6793 -4.8706 31 1 3.8045 0.2864 -4.0119 32 1 2.7793 1.2873 -5.0680 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545247.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:47:01 Heat of formation + Delta-G solvation = 16.284354 kcal Electronic energy + Delta-G solvation = -16108.055306 eV Core-core repulsion = 13490.963377 eV Total energy + Delta-G solvation = -2617.091929 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.91059 -38.84010 -36.08620 -34.90768 -33.09046 -30.85228 -30.24621 -27.48083 -26.94744 -24.80117 -24.01107 -22.08633 -20.64660 -19.01944 -17.42220 -17.26040 -16.57908 -16.18772 -15.83456 -15.57458 -15.23979 -14.58413 -13.97479 -13.70967 -13.53847 -13.27038 -13.06409 -12.87357 -12.81535 -12.77072 -12.39467 -12.27913 -11.99901 -11.68796 -11.51188 -11.12490 -10.71383 -10.51091 -10.25731 -9.35516 -8.26389 -6.11326 0.95495 1.43715 1.47252 1.56790 1.95213 2.34899 2.37266 3.13493 3.60477 3.83675 3.94578 4.09066 4.16644 4.37298 4.41887 4.59650 4.67769 4.71282 4.78706 4.82102 4.92488 4.95116 5.08730 5.21746 5.27558 5.45079 5.50798 5.63590 6.37190 6.55929 6.60327 6.94117 7.16344 8.29728 8.73095 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.024463 B = 0.011469 C = 0.008634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.311892 B = 2440.723064 C = 3242.313981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.113 3.887 3 N -0.357 5.357 4 N -0.166 5.166 5 N -0.289 5.289 6 C 0.126 3.874 7 C -0.458 4.458 8 H 0.093 0.907 9 C 0.016 3.984 10 N -0.829 5.829 11 Si 0.983 3.017 12 H -0.258 1.258 13 H -0.278 1.278 14 H -0.262 1.262 15 C -0.100 4.100 16 C 0.194 3.806 17 H 0.081 0.919 18 C -0.157 4.157 19 O -0.397 6.397 20 C 0.022 3.978 21 H 0.112 0.888 22 H 0.041 0.959 23 H 0.057 0.943 24 H 0.110 0.890 25 H 0.098 0.902 26 H 0.271 0.729 27 H 0.045 0.955 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.545 -10.900 -10.163 15.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.008 4.008 3 N -0.154 5.154 4 N -0.141 5.141 5 N -0.159 5.159 6 C -0.006 4.006 7 C -0.494 4.494 8 H 0.111 0.889 9 C -0.197 4.197 10 N -0.458 5.458 11 Si 0.804 3.196 12 H -0.182 1.182 13 H -0.203 1.203 14 H -0.186 1.186 15 C -0.235 4.235 16 C 0.135 3.865 17 H 0.099 0.901 18 C -0.215 4.215 19 O -0.316 6.316 20 C -0.074 4.074 21 H 0.130 0.870 22 H 0.060 0.940 23 H 0.076 0.924 24 H 0.128 0.872 25 H 0.116 0.884 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.067 0.933 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.382 -10.610 -8.318 14.176 hybrid contribution 0.233 0.513 -0.934 1.090 sum -4.149 -10.097 -9.252 14.310 Atomic orbital electron populations 1.22125 0.92977 1.04442 1.02001 1.22002 0.96445 0.77193 1.05194 1.50000 1.47785 1.12866 1.04713 1.81323 1.23815 0.99745 1.09229 1.75044 1.17147 1.09955 1.13721 1.19526 0.99196 0.93999 0.87911 1.18909 1.41620 0.94899 0.94011 0.88887 1.26800 0.94148 1.02676 0.96103 1.70193 1.37081 1.27382 1.11164 0.85260 0.79498 0.76494 0.78320 1.18222 1.20336 1.18601 1.21841 1.16982 0.93943 0.90701 1.19829 0.86212 0.97087 0.83418 0.90112 1.22148 0.96322 1.01644 1.01353 1.88147 1.46521 1.52951 1.43941 1.23001 1.01554 0.94255 0.88566 0.86960 0.93963 0.92417 0.87210 0.88412 0.91928 0.93575 0.89588 0.91651 0.89213 0.93344 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 10.24 71.98 0.74 -3.01 16 2 C 0.11 3.26 6.98 86.38 0.60 3.86 16 3 N -0.36 -15.86 3.63 -331.63 -1.20 -17.07 16 4 N -0.17 -9.17 13.74 37.02 0.51 -8.66 16 5 N -0.29 -18.15 10.55 -52.51 -0.55 -18.70 16 6 C 0.13 7.39 6.69 39.67 0.27 7.66 16 7 C -0.46 -26.69 8.67 23.44 0.20 -26.49 16 8 H 0.09 5.14 6.58 -2.91 -0.02 5.12 16 9 C 0.02 0.90 5.49 85.18 0.47 1.37 16 10 N -0.83 -50.89 11.92 21.79 0.26 -50.63 16 11 Si 0.98 43.07 29.56 68.60 2.03 45.10 16 12 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 13 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 14 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 15 C -0.10 -4.74 6.08 42.25 0.26 -4.49 16 16 C 0.19 6.98 2.91 29.85 0.09 7.07 16 17 H 0.08 2.27 6.53 -2.39 -0.02 2.25 16 18 C -0.16 -4.99 9.51 71.98 0.68 -4.30 16 19 O -0.40 -15.17 8.79 -148.98 -1.31 -16.48 16 20 C 0.02 0.56 10.82 113.37 1.23 1.79 16 21 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.06 1.41 7.85 -2.38 -0.02 1.39 16 24 H 0.11 2.48 7.03 -2.39 -0.02 2.46 16 25 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 26 H 0.27 15.36 8.30 -92.70 -0.77 14.59 16 27 H 0.05 1.78 7.84 -2.39 -0.02 1.76 16 28 H 0.09 2.07 7.87 -2.39 -0.02 2.05 16 29 H 0.06 1.93 7.85 -2.38 -0.02 1.91 16 30 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.05 1.04 8.09 -2.38 -0.02 1.02 16 32 H 0.06 1.18 7.87 -2.39 -0.02 1.16 16 Total: -1.00 -78.54 275.30 5.37 -73.18 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 1.11 Total: 9.81 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: 4.53 Total: -16.55 kcal Atomic # 7 Polarization: -94.07 SS G_CDS: -0.99 Total: -95.06 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -1.31 Total: -16.48 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -78.54 5.37 -73.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545247.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.461 kcal (2) G-P(sol) polarization free energy of solvation -78.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds