Wall clock time and date at job start Mon Mar 30 2020 20:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50697 * 109.47204 * 2 1 4 4 C 1.39012 * 126.77183 * 269.97643 * 3 2 1 5 5 C 1.41491 * 126.02504 * 359.97438 * 4 3 2 6 6 H 1.08004 * 119.99506 * 0.03116 * 5 4 3 7 7 C 1.39733 * 120.00597 * 180.02562 * 5 4 3 8 8 N 1.30988 * 120.00133 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00181 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47329 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46922 * 120.00248 * 9 7 5 12 12 H 1.48496 * 109.47353 * 239.99958 * 9 7 5 13 13 N 1.34841 * 107.96164 * 180.02562 * 4 3 2 14 14 N 1.28674 * 109.63425 * 359.97438 * 13 4 3 15 15 N 1.35019 * 126.77272 * 89.97667 * 3 2 1 16 16 C 1.46497 * 126.49264 * 359.97438 * 15 3 2 17 17 C 1.53009 * 109.47187 * 270.02577 * 16 15 3 18 18 H 1.09001 * 109.46964 * 54.99694 * 17 16 15 19 19 C 1.53001 * 109.46905 * 174.99843 * 17 16 15 20 20 O 1.42893 * 109.47184 * 294.99943 * 17 16 15 21 21 H 1.09004 * 109.46387 * 59.99815 * 1 2 3 22 22 H 1.08995 * 109.47284 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46588 * 300.00287 * 1 2 3 24 24 H 1.08997 * 109.46840 * 240.00167 * 2 1 3 25 25 H 1.08997 * 109.47225 * 120.00176 * 2 1 3 26 26 H 0.97000 * 120.00361 * 179.97438 * 8 7 5 27 27 H 1.08997 * 109.47085 * 30.02486 * 16 15 3 28 28 H 1.08995 * 109.47521 * 150.02564 * 16 15 3 29 29 H 1.08995 * 109.47026 * 60.00033 * 19 17 16 30 30 H 1.09003 * 109.46676 * 179.97438 * 19 17 16 31 31 H 1.09000 * 109.47270 * 299.99592 * 19 17 16 32 32 H 0.96701 * 114.00305 * 300.00624 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3102 2.2052 -1.1135 5 6 2.1718 1.8103 -2.4651 6 1 1.8207 0.8173 -2.7043 7 6 2.4890 2.7049 -3.4905 8 7 2.9152 3.9091 -3.2006 9 14 2.3055 2.1837 -5.2750 10 1 1.8097 0.7852 -5.3337 11 1 1.3371 3.0806 -5.9555 12 1 3.6230 2.2713 -5.9543 13 7 2.7361 3.4085 -0.6787 14 7 2.7416 3.4261 0.6079 15 7 2.3014 2.1830 1.0815 16 6 2.1598 1.7856 2.4845 17 6 0.7504 2.1281 2.9717 18 1 0.0157 1.6655 2.3127 19 6 0.5612 1.6015 4.3958 20 8 0.5740 3.5461 2.9608 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3632 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 3.1358 4.5301 -3.9124 27 1 2.3252 0.7122 2.5765 28 1 2.8929 2.3194 3.0891 29 1 1.2958 2.0641 5.0548 30 1 -0.4427 1.8459 4.7430 31 1 0.6956 0.5199 4.4041 32 1 1.1956 4.0241 3.5266 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545355.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:47:05 Heat of formation + Delta-G solvation = 23.411210 kcal Electronic energy + Delta-G solvation = -15881.907556 eV Core-core repulsion = 13265.124671 eV Total energy + Delta-G solvation = -2616.782885 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.98382 -37.46506 -33.74835 -33.40161 -32.15133 -30.45737 -28.54796 -26.41016 -24.73143 -22.83591 -21.87049 -20.30505 -18.88868 -17.24186 -16.21730 -15.48957 -15.15068 -14.83137 -14.37627 -13.71917 -13.39249 -13.11741 -12.92079 -12.36159 -12.19955 -11.83006 -11.69421 -11.34036 -11.13131 -11.04112 -10.77962 -10.56793 -10.34914 -10.19963 -10.10973 -9.60892 -9.19799 -8.77803 -8.30089 -7.30331 -6.29746 -4.08443 2.88919 3.19943 3.24665 3.28525 3.64981 4.18946 4.39555 4.50649 4.84751 5.10032 5.12996 5.30736 5.57096 5.59872 5.63008 5.67788 5.70502 5.94970 6.06189 6.10455 6.30992 6.38058 6.58146 6.83674 7.02430 7.21794 7.49312 7.60352 7.84695 8.24193 8.50099 8.91111 9.16323 10.30800 10.67317 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.040573 B = 0.008115 C = 0.007235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.940031 B = 3449.756252 C = 3868.990889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.018 4.018 3 C -0.118 4.118 4 C 0.154 3.846 5 C -0.451 4.451 6 H 0.080 0.920 7 C 0.072 3.928 8 N -0.777 5.777 9 Si 0.905 3.095 10 H -0.264 1.264 11 H -0.277 1.277 12 H -0.277 1.277 13 N -0.230 5.230 14 N -0.124 5.124 15 N -0.371 5.371 16 C 0.107 3.893 17 C 0.085 3.915 18 H 0.103 0.897 19 C -0.182 4.182 20 O -0.548 6.548 21 H 0.063 0.937 22 H 0.046 0.954 23 H 0.042 0.958 24 H 0.077 0.923 25 H 0.046 0.954 26 H 0.270 0.730 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.345 -7.158 9.987 12.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.058 4.058 3 C -0.248 4.248 4 C 0.024 3.976 5 C -0.487 4.487 6 H 0.098 0.902 7 C -0.146 4.146 8 N -0.404 5.404 9 Si 0.730 3.270 10 H -0.188 1.188 11 H -0.203 1.203 12 H -0.203 1.203 13 N -0.102 5.102 14 N -0.100 5.100 15 N -0.167 5.167 16 C -0.018 4.018 17 C 0.025 3.975 18 H 0.120 0.880 19 C -0.240 4.240 20 O -0.353 6.353 21 H 0.082 0.918 22 H 0.065 0.935 23 H 0.061 0.939 24 H 0.095 0.905 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -3.224 -5.663 9.877 11.834 hybrid contribution 0.025 -1.155 -0.549 1.279 sum -3.199 -6.818 9.328 11.989 Atomic orbital electron populations 1.21806 0.96266 1.00058 1.02058 1.19530 0.94616 0.90519 1.01121 1.21386 1.19400 0.96542 0.87504 1.18965 0.97872 0.87457 0.93319 1.18547 1.42619 0.99883 0.87634 0.90170 1.25776 0.93724 0.94516 1.00593 1.70034 1.32151 1.04680 1.33541 0.86329 0.78301 0.79494 0.82862 1.18808 1.20299 1.20310 1.75080 1.15963 1.19489 0.99649 1.81478 1.21813 0.99570 1.07107 1.49291 1.50866 1.12367 1.04168 1.22105 0.97838 1.00785 0.81071 1.22425 0.96679 0.82565 0.95880 0.87970 1.22465 1.02773 1.01898 0.96864 1.86684 1.60089 1.17320 1.71170 0.91829 0.93518 0.93892 0.90476 0.93569 0.91915 0.89585 0.89733 0.92169 0.91530 0.91468 0.78205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.90 37.16 0.37 -2.00 16 2 C -0.02 -0.33 5.99 -27.88 -0.17 -0.50 16 3 C -0.12 -2.77 6.37 -80.90 -0.52 -3.29 16 4 C 0.15 4.35 6.72 -85.02 -0.57 3.78 16 5 C -0.45 -12.56 9.11 -37.78 -0.34 -12.90 16 6 H 0.08 2.07 7.30 -52.48 -0.38 1.69 16 7 C 0.07 1.98 5.49 -17.35 -0.10 1.88 16 8 N -0.78 -22.67 11.92 55.54 0.66 -22.01 16 9 Si 0.90 20.03 29.56 -169.99 -5.02 15.01 16 10 H -0.26 -5.64 7.11 56.52 0.40 -5.23 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 12 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 13 N -0.23 -6.89 10.55 32.05 0.34 -6.56 16 14 N -0.12 -3.31 13.74 60.35 0.83 -2.48 16 15 N -0.37 -8.27 3.58 -56.18 -0.20 -8.48 16 16 C 0.11 1.68 5.94 -4.04 -0.02 1.65 16 17 C 0.09 1.21 3.83 -26.73 -0.10 1.11 16 18 H 0.10 1.62 6.14 -51.93 -0.32 1.30 16 19 C -0.18 -1.78 9.53 37.16 0.35 -1.43 16 20 O -0.55 -9.08 13.29 -35.23 -0.47 -9.55 16 21 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.04 0.68 6.14 -51.93 -0.32 0.36 16 24 H 0.08 1.44 7.56 -51.93 -0.39 1.04 16 25 H 0.05 0.72 7.20 -51.93 -0.37 0.34 16 26 H 0.27 7.22 8.30 -40.82 -0.34 6.88 16 27 H 0.09 1.14 7.17 -51.93 -0.37 0.77 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.37 4.74 9.05 45.56 0.41 5.15 16 LS Contribution 274.55 15.07 4.14 4.14 Total: -1.00 -34.24 274.55 -4.24 -38.49 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -3.42 Total: 3.14 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -1.10 Total: -11.69 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 1.63 Total: -39.52 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -0.47 Total: -9.55 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -34.24 -4.24 -38.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545355.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.897 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds