Wall clock time and date at job start Mon Mar 30 2020 20:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50697 * 109.47204 * 2 1 4 4 C 1.39012 * 126.77183 * 269.97643 * 3 2 1 5 5 C 1.41491 * 126.02504 * 359.97438 * 4 3 2 6 6 H 1.08004 * 119.99506 * 0.03116 * 5 4 3 7 7 C 1.39733 * 120.00597 * 180.02562 * 5 4 3 8 8 N 1.30988 * 120.00133 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00181 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47329 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46922 * 120.00248 * 9 7 5 12 12 H 1.48496 * 109.47353 * 239.99958 * 9 7 5 13 13 N 1.34841 * 107.96164 * 180.02562 * 4 3 2 14 14 N 1.28674 * 109.63425 * 359.97438 * 13 4 3 15 15 N 1.35019 * 126.77272 * 89.97667 * 3 2 1 16 16 C 1.46497 * 126.49264 * 359.97438 * 15 3 2 17 17 C 1.53009 * 109.47187 * 270.02577 * 16 15 3 18 18 H 1.09001 * 109.46964 * 54.99694 * 17 16 15 19 19 C 1.53001 * 109.46905 * 174.99843 * 17 16 15 20 20 O 1.42893 * 109.47184 * 294.99943 * 17 16 15 21 21 H 1.09004 * 109.46387 * 59.99815 * 1 2 3 22 22 H 1.08995 * 109.47284 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46588 * 300.00287 * 1 2 3 24 24 H 1.08997 * 109.46840 * 240.00167 * 2 1 3 25 25 H 1.08997 * 109.47225 * 120.00176 * 2 1 3 26 26 H 0.97000 * 120.00361 * 179.97438 * 8 7 5 27 27 H 1.08997 * 109.47085 * 30.02486 * 16 15 3 28 28 H 1.08995 * 109.47521 * 150.02564 * 16 15 3 29 29 H 1.08995 * 109.47026 * 60.00033 * 19 17 16 30 30 H 1.09003 * 109.46676 * 179.97438 * 19 17 16 31 31 H 1.09000 * 109.47270 * 299.99592 * 19 17 16 32 32 H 0.96701 * 114.00305 * 300.00624 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3102 2.2052 -1.1135 5 6 2.1718 1.8103 -2.4651 6 1 1.8207 0.8173 -2.7043 7 6 2.4890 2.7049 -3.4905 8 7 2.9152 3.9091 -3.2006 9 14 2.3055 2.1837 -5.2750 10 1 1.8097 0.7852 -5.3337 11 1 1.3371 3.0806 -5.9555 12 1 3.6230 2.2713 -5.9543 13 7 2.7361 3.4085 -0.6787 14 7 2.7416 3.4261 0.6079 15 7 2.3014 2.1830 1.0815 16 6 2.1598 1.7856 2.4845 17 6 0.7504 2.1281 2.9717 18 1 0.0157 1.6655 2.3127 19 6 0.5612 1.6015 4.3958 20 8 0.5740 3.5461 2.9608 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3632 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 3.1358 4.5301 -3.9124 27 1 2.3252 0.7122 2.5765 28 1 2.8929 2.3194 3.0891 29 1 1.2958 2.0641 5.0548 30 1 -0.4427 1.8459 4.7430 31 1 0.6956 0.5199 4.4041 32 1 1.1956 4.0241 3.5266 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545355.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:47:05 Heat of formation + Delta-G solvation = -3.892829 kcal Electronic energy + Delta-G solvation = -15883.091548 eV Core-core repulsion = 13265.124671 eV Total energy + Delta-G solvation = -2617.966877 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.86722 -38.72291 -35.49133 -35.19991 -33.71188 -31.75916 -30.41074 -27.84605 -26.57703 -24.39790 -23.08857 -22.22287 -20.57157 -19.11791 -17.57924 -16.93793 -16.71121 -16.56266 -15.79266 -15.26267 -14.99624 -14.67731 -14.41785 -13.57759 -13.32658 -13.20140 -13.00372 -12.91620 -12.82813 -12.69076 -12.30205 -12.02211 -11.96468 -11.73989 -11.52467 -11.41516 -11.06479 -10.71151 -10.08503 -9.29875 -8.27529 -6.15161 1.05395 1.43582 1.44341 1.59533 2.04285 2.35076 2.37461 3.41350 3.55864 3.68904 3.92916 4.06189 4.19474 4.24392 4.31397 4.52811 4.61876 4.83382 4.86528 4.89816 5.06133 5.12309 5.17985 5.25597 5.31000 5.49251 5.57860 5.70380 6.42731 6.49626 6.81195 6.93912 7.12480 8.34856 8.72713 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.040573 B = 0.008115 C = 0.007235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.940031 B = 3449.756252 C = 3868.990889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.021 4.021 3 C -0.084 4.084 4 C 0.101 3.899 5 C -0.480 4.480 6 H 0.092 0.908 7 C 0.017 3.983 8 N -0.832 5.832 9 Si 0.985 3.015 10 H -0.248 1.248 11 H -0.276 1.276 12 H -0.274 1.274 13 N -0.288 5.288 14 N -0.165 5.165 15 N -0.353 5.353 16 C 0.090 3.910 17 C 0.088 3.912 18 H 0.085 0.915 19 C -0.168 4.168 20 O -0.580 6.580 21 H 0.033 0.967 22 H 0.088 0.912 23 H 0.048 0.952 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.271 0.729 27 H 0.123 0.877 28 H 0.102 0.898 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.201 -10.122 11.508 15.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.061 4.061 3 C -0.219 4.219 4 C -0.032 4.032 5 C -0.516 4.516 6 H 0.110 0.890 7 C -0.196 4.196 8 N -0.461 5.461 9 Si 0.807 3.193 10 H -0.171 1.171 11 H -0.201 1.201 12 H -0.199 1.199 13 N -0.157 5.157 14 N -0.140 5.140 15 N -0.147 5.147 16 C -0.032 4.032 17 C 0.028 3.972 18 H 0.103 0.897 19 C -0.226 4.226 20 O -0.388 6.388 21 H 0.052 0.948 22 H 0.107 0.893 23 H 0.067 0.933 24 H 0.094 0.906 25 H 0.106 0.894 26 H 0.080 0.920 27 H 0.141 0.859 28 H 0.120 0.880 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -4.069 -8.607 11.487 14.919 hybrid contribution 0.242 -0.370 -0.745 0.867 sum -3.827 -8.977 10.742 14.513 Atomic orbital electron populations 1.21731 0.94380 1.02433 1.00924 1.19799 0.96049 0.87084 1.03135 1.22284 1.14867 0.98087 0.86707 1.19612 1.00106 0.88303 0.95190 1.18931 1.43714 1.00666 0.88325 0.89041 1.26782 0.92990 0.94235 1.05578 1.70208 1.34578 1.06302 1.34974 0.85116 0.78242 0.79641 0.76335 1.17066 1.20121 1.19885 1.75021 1.18375 1.21270 1.01073 1.81331 1.24625 1.01723 1.06325 1.49797 1.47371 1.10867 1.06620 1.22793 0.99719 1.03251 0.77461 1.22454 0.94687 0.81592 0.98501 0.89702 1.22347 1.03549 1.03231 0.93449 1.86643 1.60999 1.19003 1.72117 0.94773 0.89348 0.93334 0.90554 0.89400 0.91970 0.85896 0.87965 0.90459 0.91230 0.89142 0.76611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.06 9.90 71.98 0.71 -3.35 16 2 C -0.02 -0.71 5.99 29.85 0.18 -0.53 16 3 C -0.08 -3.91 6.37 42.25 0.27 -3.64 16 4 C 0.10 5.88 6.72 39.67 0.27 6.14 16 5 C -0.48 -27.46 9.11 23.43 0.21 -27.25 16 6 H 0.09 4.77 7.30 -2.91 -0.02 4.75 16 7 C 0.02 0.96 5.49 85.18 0.47 1.42 16 8 N -0.83 -51.09 11.92 21.79 0.26 -50.83 16 9 Si 0.99 42.18 29.56 68.60 2.03 44.21 16 10 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 11 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 12 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 13 N -0.29 -18.13 10.55 -52.52 -0.55 -18.68 16 14 N -0.17 -9.10 13.74 37.02 0.51 -8.59 16 15 N -0.35 -15.40 3.58 -331.64 -1.19 -16.58 16 16 C 0.09 2.53 5.94 86.38 0.51 3.04 16 17 C 0.09 2.25 3.83 30.60 0.12 2.37 16 18 H 0.09 2.48 6.14 -2.39 -0.01 2.46 16 19 C -0.17 -2.55 9.53 71.98 0.69 -1.86 16 20 O -0.58 -18.62 13.29 -148.98 -1.98 -20.60 16 21 H 0.03 1.20 8.14 -2.38 -0.02 1.19 16 22 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.05 1.38 6.14 -2.39 -0.01 1.37 16 24 H 0.08 2.63 7.56 -2.39 -0.02 2.62 16 25 H 0.09 2.25 7.20 -2.39 -0.02 2.24 16 26 H 0.27 15.29 8.30 -92.71 -0.77 14.52 16 27 H 0.12 2.60 7.17 -2.39 -0.02 2.59 16 28 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.38 9.44 9.05 -74.06 -0.67 8.77 16 Total: -1.00 -80.38 274.55 2.96 -77.42 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.46 Total: 17.32 kcal Atomic # 6 Polarization: -27.08 SS G_CDS: 3.42 Total: -23.65 kcal Atomic # 7 Polarization: -93.72 SS G_CDS: -0.97 Total: -94.69 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -1.98 Total: -20.60 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -80.38 2.96 -77.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545355.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.526 kcal (2) G-P(sol) polarization free energy of solvation -80.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds