Wall clock time and date at job start Mon Mar 30 2020 20:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99954 * 2 1 4 4 C 1.47197 * 109.46660 * 180.02562 * 3 2 1 5 5 C 3.40059 * 161.18923 * 359.97438 * 2 1 3 6 6 C 4.78773 * 168.18662 * 359.97438 * 2 1 3 7 7 N 1.46896 * 109.47367 * 20.29008 * 6 5 4 8 8 C 1.47962 * 111.00206 * 169.99807 * 7 6 5 9 9 C 1.53933 * 86.18036 * 137.57868 * 8 7 6 10 10 O 1.42903 * 113.73455 * 90.64263 * 9 8 7 11 11 C 1.50702 * 113.73325 * 221.81483 * 9 8 7 12 12 H 1.07996 * 120.00082 * 358.09933 * 11 9 8 13 13 C 1.37882 * 119.99818 * 178.10181 * 11 9 8 14 14 N 1.31515 * 119.99822 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 119.99751 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47103 * 90.00062 * 15 13 11 17 17 H 1.48503 * 109.47193 * 210.00012 * 15 13 11 18 18 H 1.48499 * 109.47329 * 329.99900 * 15 13 11 19 19 C 1.48304 * 111.00332 * 269.34819 * 7 6 5 20 20 H 1.09005 * 109.47215 * 59.99289 * 1 2 3 21 21 H 1.09000 * 109.47511 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.46773 * 300.00026 * 1 2 3 23 23 H 1.09000 * 109.46634 * 60.00185 * 3 2 1 24 24 H 1.09000 * 109.47084 * 299.99951 * 3 2 1 25 25 H 1.08991 * 109.47245 * 260.28405 * 6 5 4 26 26 H 1.09001 * 109.47009 * 140.28693 * 6 5 4 27 27 H 1.08997 * 113.75944 * 23.26083 * 8 7 6 28 28 H 1.09001 * 113.85960 * 251.90728 * 8 7 6 29 29 H 0.96700 * 114.00311 * 181.89938 * 10 9 8 30 30 H 0.97006 * 119.99605 * 180.02562 * 14 13 11 31 31 H 1.09004 * 113.85839 * 108.14487 * 19 7 6 32 32 H 1.09000 * 113.75896 * 336.68350 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.4776 1.1892 -0.0006 5 6 4.6480 1.0965 -0.0005 6 6 6.1154 0.9802 -0.0004 7 7 6.5009 -0.3535 -0.4807 8 6 7.9588 -0.4293 -0.7218 9 6 7.8932 -1.8144 -0.0533 10 8 7.6617 -2.8854 -0.9707 11 6 9.0354 -2.0867 0.8912 12 1 9.8162 -1.3519 1.0205 13 6 9.0837 -3.2742 1.5904 14 7 8.1332 -4.1693 1.4325 15 14 10.4999 -3.6121 2.7606 16 1 10.1512 -3.1156 4.1160 17 1 10.7555 -5.0737 2.8195 18 1 11.7189 -2.9155 2.2768 19 6 6.6176 -1.3109 0.6459 20 1 -0.3634 0.5140 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8901 23 1 1.6886 1.8463 0.8900 24 1 1.6886 1.8464 -0.8900 25 1 6.4912 1.1243 1.0124 26 1 6.5400 1.7395 -0.6571 27 1 8.5358 0.3035 -0.1579 28 1 8.2300 -0.4633 -1.7769 29 1 7.5909 -3.7539 -0.5516 30 1 8.1670 -5.0046 1.9246 31 1 5.8162 -2.0489 0.6821 32 1 6.8033 -0.8353 1.6089 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169630952.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:47:18 Heat of formation + Delta-G solvation = -28.822811 kcal Electronic energy + Delta-G solvation = -14954.669595 eV Core-core repulsion = 12303.328922 eV Total energy + Delta-G solvation = -2651.340674 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.78958 -38.93802 -36.50502 -34.58215 -34.12030 -31.18783 -28.84568 -27.52436 -26.90831 -26.25949 -23.90986 -20.53752 -19.35728 -18.27999 -17.42830 -17.16122 -16.92556 -16.81046 -16.23639 -16.01687 -15.75167 -14.70331 -14.11184 -13.96239 -13.79284 -13.55525 -13.35914 -13.02427 -12.76091 -12.58948 -12.43458 -12.24639 -12.08704 -11.49217 -11.15397 -11.03967 -10.63531 -10.43850 -10.14202 -9.64681 -8.24060 -6.42830 1.30903 1.43085 1.45195 1.55636 1.64221 2.38204 2.95951 3.01306 3.13757 3.50983 4.03963 4.12496 4.18623 4.23809 4.39075 4.45775 4.50633 4.51609 4.60660 4.63598 4.71637 4.86410 4.88350 5.10973 5.37514 5.42562 5.73973 5.97498 6.17665 6.21108 6.56659 6.63692 7.30626 7.48856 8.81332 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.035830 B = 0.005481 C = 0.005200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.281144 B = 5107.345605 C = 5383.679881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.425 6.425 3 C 0.181 3.819 4 C -0.212 4.212 5 C -0.158 4.158 6 C 0.123 3.877 7 N -0.489 5.489 8 C 0.023 3.977 9 C 0.216 3.784 10 O -0.585 6.585 11 C -0.560 4.560 12 H 0.071 0.929 13 C 0.025 3.975 14 N -0.921 5.921 15 Si 0.970 3.030 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.266 1.266 19 C -0.002 4.002 20 H 0.061 0.939 21 H 0.092 0.908 22 H 0.061 0.939 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.075 0.925 26 H 0.117 0.883 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.381 0.619 30 H 0.273 0.727 31 H 0.044 0.956 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.452 10.544 0.104 14.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.345 6.345 3 C 0.106 3.894 4 C -0.213 4.213 5 C -0.158 4.158 6 C -0.004 4.004 7 N -0.211 5.211 8 C -0.105 4.105 9 C 0.176 3.824 10 O -0.395 6.395 11 C -0.598 4.598 12 H 0.089 0.911 13 C -0.175 4.175 14 N -0.562 5.562 15 Si 0.795 3.205 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.190 1.190 19 C -0.131 4.131 20 H 0.080 0.920 21 H 0.110 0.890 22 H 0.080 0.920 23 H 0.115 0.885 24 H 0.115 0.885 25 H 0.093 0.907 26 H 0.135 0.865 27 H 0.111 0.889 28 H 0.100 0.900 29 H 0.234 0.766 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.848 10.579 -0.819 14.476 hybrid contribution 0.796 -0.526 1.667 1.920 sum -9.052 10.053 0.848 13.554 Atomic orbital electron populations 1.23006 0.78159 1.04059 1.01787 1.87980 1.22559 1.28195 1.95807 1.19308 0.81541 0.85179 1.03379 1.22571 0.94109 1.02591 1.02068 1.22701 0.94374 0.97748 1.01012 1.19779 0.85224 0.94087 1.01292 1.68520 1.17213 1.05440 1.29970 1.24115 0.87956 0.96869 1.01603 1.20153 0.90885 0.84924 0.86484 1.86028 1.94937 1.20278 1.38300 1.21931 1.09487 1.03866 1.24548 0.91082 1.25870 0.98373 0.95404 0.97829 1.69535 1.34297 1.08971 1.43396 0.85374 0.79159 0.77349 0.78646 1.19879 1.20751 1.19025 1.24621 1.00182 0.95309 0.92983 0.92020 0.89000 0.92022 0.88493 0.88533 0.90727 0.86524 0.88919 0.89964 0.76556 0.91736 0.93746 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.68 16 2 O -0.43 -12.19 10.66 -148.98 -1.59 -13.78 16 3 C 0.18 4.38 6.41 70.18 0.45 4.83 16 4 C -0.21 -7.15 13.73 31.12 0.43 -6.72 16 5 C -0.16 -5.78 13.65 31.12 0.42 -5.36 16 6 C 0.12 4.33 5.28 84.50 0.45 4.77 16 7 N -0.49 -21.44 6.13 -921.06 -5.64 -27.08 16 8 C 0.02 0.97 7.34 86.41 0.63 1.61 16 9 C 0.22 11.26 1.40 -10.90 -0.02 11.25 16 10 O -0.58 -33.20 13.48 -148.98 -2.01 -35.21 16 11 C -0.56 -29.96 8.61 25.60 0.22 -29.74 16 12 H 0.07 3.63 7.81 -2.91 -0.02 3.60 16 13 C 0.03 1.33 5.40 84.66 0.46 1.78 16 14 N -0.92 -50.85 11.20 21.45 0.24 -50.61 16 15 Si 0.97 41.62 29.54 68.60 2.03 43.65 16 16 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 17 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 18 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 19 C 0.00 -0.08 7.35 86.34 0.63 0.56 16 20 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 21 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 22 H 0.06 0.80 8.14 -2.38 -0.02 0.79 16 23 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.07 2.47 7.38 -2.39 -0.02 2.45 16 26 H 0.12 3.38 8.08 -2.39 -0.02 3.37 16 27 H 0.09 3.48 7.87 -2.39 -0.02 3.46 16 28 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 29 H 0.38 22.16 6.60 -74.06 -0.49 21.67 16 30 H 0.27 14.22 8.31 -92.70 -0.77 13.45 16 31 H 0.04 2.40 8.14 -2.38 -0.02 2.38 16 32 H 0.06 3.09 7.43 -2.39 -0.02 3.07 16 Total: -1.00 -65.83 282.98 -1.42 -67.25 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: 0.63 Total: 31.12 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: 4.93 Total: -15.33 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: -5.40 Total: -77.69 kcal Atomic # 8 Polarization: -45.40 SS G_CDS: -3.60 Total: -48.99 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -65.83 -1.42 -67.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169630952.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.429 kcal (2) G-P(sol) polarization free energy of solvation -65.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds