Wall clock time and date at job start Mon Mar 30 2020 20:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47494 * 2 1 4 4 N 1.46900 * 109.47167 * 120.00406 * 2 1 3 5 5 C 1.46898 * 111.00191 * 274.99653 * 4 2 1 6 6 C 1.52994 * 109.47670 * 180.02562 * 5 4 2 7 7 H 1.09000 * 109.46833 * 59.99622 * 6 5 4 8 8 O 1.42902 * 109.46875 * 300.00374 * 6 5 4 9 9 C 1.50693 * 109.47436 * 180.02562 * 6 5 4 10 10 H 1.08000 * 120.00341 * 0.02562 * 9 6 5 11 11 C 1.37882 * 119.99885 * 179.97438 * 9 6 5 12 12 N 1.31511 * 120.00058 * 0.02562 * 11 9 6 13 13 Si 1.86805 * 119.99736 * 180.02562 * 11 9 6 14 14 H 1.48499 * 109.46962 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46871 * 120.00278 * 13 11 9 16 16 H 1.48504 * 109.47043 * 240.00346 * 13 11 9 17 17 C 1.50706 * 109.47097 * 240.00382 * 2 1 3 18 18 C 1.39870 * 126.03571 * 280.02542 * 17 2 1 19 19 N 1.30836 * 108.20019 * 179.71573 * 18 17 2 20 20 N 1.40090 * 108.20534 * 0.24683 * 19 18 17 21 21 H 0.97004 * 126.03573 * 180.02562 * 20 19 18 22 22 C 1.34942 * 107.92509 * 359.97438 * 20 19 18 23 23 H 1.08994 * 109.47486 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46987 * 300.00217 * 1 2 3 25 25 H 1.09006 * 109.47118 * 59.99483 * 1 2 3 26 26 H 1.00906 * 111.00049 * 151.04123 * 4 2 1 27 27 H 1.09001 * 109.47247 * 300.00496 * 5 4 2 28 28 H 1.09007 * 109.46934 * 59.99335 * 5 4 2 29 29 H 0.96706 * 113.99862 * 299.99386 * 8 6 5 30 30 H 0.97003 * 119.99801 * 179.97438 * 12 11 9 31 31 H 1.08002 * 125.90382 * 359.97438 * 18 17 2 32 32 H 1.08002 * 126.12737 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0825 0.2224 2.3469 6 6 2.5963 -0.5330 3.5741 7 1 3.5917 -0.9265 3.3681 8 8 1.7100 -1.6131 3.8741 9 6 2.6602 0.4055 4.7514 10 1 2.3636 1.4375 4.6360 11 6 3.0963 -0.0537 5.9762 12 7 3.4570 -1.3105 6.1168 13 14 3.1748 1.1096 7.4357 14 1 2.7177 2.4593 7.0181 15 1 2.2957 0.6032 8.5201 16 1 4.5731 1.1908 7.9293 17 6 2.0323 -0.7104 -1.2306 18 6 2.1210 -2.0956 -1.4024 19 7 2.5961 -2.3294 -2.5988 20 7 2.8306 -1.0983 -3.2249 21 1 3.1825 -0.9710 -4.1198 22 6 2.4793 -0.1207 -2.3635 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 2.9173 -1.1207 1.0286 27 1 2.7589 1.0460 2.1182 28 1 1.0871 0.6162 2.5525 29 1 0.8040 -1.3361 4.0681 30 1 3.7642 -1.6334 6.9784 31 1 1.8412 -2.8433 -0.6750 32 1 2.5401 0.9418 -2.5470 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354603016.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:47:27 Heat of formation + Delta-G solvation = -6.269373 kcal Electronic energy + Delta-G solvation = -15230.784560 eV Core-core repulsion = 12612.714628 eV Total energy + Delta-G solvation = -2618.069932 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.10290 -38.47242 -36.60568 -34.17875 -32.60290 -32.08870 -29.75859 -29.03975 -26.14335 -23.36191 -22.98067 -22.06653 -20.70185 -18.96904 -18.57708 -16.71237 -16.62427 -16.19111 -15.64969 -15.45209 -15.26762 -15.05454 -14.69369 -14.09064 -13.60108 -13.34909 -12.93060 -12.85931 -12.81924 -12.68671 -12.38830 -12.18274 -11.93803 -11.37068 -10.95896 -10.68156 -10.55082 -10.02799 -9.42283 -9.10810 -8.09581 -6.35421 0.99760 1.42215 1.43506 1.55613 1.84112 2.11673 2.41857 3.16609 3.41590 3.85504 4.13077 4.36156 4.45695 4.48460 4.57143 4.63736 4.76247 4.81095 4.93155 5.09896 5.16236 5.24249 5.50688 5.65594 5.68959 5.82388 6.10824 6.35540 6.49333 6.60848 6.76935 6.80188 7.39226 7.68603 8.95128 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.053115 B = 0.005340 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.028184 B = 5242.112161 C = 5355.595624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.162 3.838 3 H 0.048 0.952 4 N -0.678 5.678 5 C 0.057 3.943 6 C 0.233 3.767 7 H 0.014 0.986 8 O -0.570 6.570 9 C -0.586 4.586 10 H 0.060 0.940 11 C 0.024 3.976 12 N -0.901 5.901 13 Si 0.960 3.040 14 H -0.262 1.262 15 H -0.280 1.280 16 H -0.280 1.280 17 C -0.255 4.255 18 C 0.061 3.939 19 N -0.333 5.333 20 N -0.470 5.470 21 H 0.452 0.548 22 C 0.078 3.922 23 H 0.049 0.951 24 H 0.046 0.954 25 H 0.069 0.931 26 H 0.333 0.667 27 H 0.022 0.978 28 H 0.066 0.934 29 H 0.353 0.647 30 H 0.260 0.740 31 H 0.179 0.821 32 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.370 5.707 -16.353 17.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.052 3.948 3 H 0.066 0.934 4 N -0.309 5.309 5 C -0.073 4.073 6 C 0.175 3.825 7 H 0.032 0.968 8 O -0.373 6.373 9 C -0.624 4.624 10 H 0.079 0.921 11 C -0.178 4.178 12 N -0.539 5.539 13 Si 0.785 3.215 14 H -0.186 1.186 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.267 4.267 18 C -0.125 4.125 19 N -0.156 5.156 20 N -0.179 5.179 21 H 0.299 0.701 22 C -0.071 4.071 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.151 0.849 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.197 0.803 30 H 0.069 0.931 31 H 0.196 0.804 32 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -3.035 4.071 -17.027 17.768 hybrid contribution 0.500 1.762 1.058 2.115 sum -2.534 5.833 -15.969 17.189 Atomic orbital electron populations 1.21700 0.93904 1.01671 1.01080 1.19747 0.95552 0.94270 0.85260 0.93377 1.60511 1.33182 1.33228 1.03944 1.22493 0.99840 0.93516 0.91438 1.19185 0.88482 0.84750 0.90103 0.96775 1.86498 1.22171 1.36364 1.92313 1.22102 1.46604 0.97261 0.96415 0.92141 1.25913 0.93652 0.96296 1.01919 1.70239 1.42768 1.16061 1.24816 0.85504 0.77689 0.79350 0.78962 1.18567 1.20568 1.20629 1.20258 1.14439 0.93450 0.98566 1.23877 0.97623 0.96960 0.94082 1.77285 1.23820 1.04878 1.09632 1.46306 1.51980 1.03225 1.16416 0.70113 1.22871 0.97464 0.96858 0.89899 0.93218 0.93457 0.91257 0.84942 0.95981 0.91559 0.80310 0.93086 0.80376 0.76999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 9.40 71.98 0.68 -2.49 16 2 C 0.16 4.38 3.05 44.17 0.13 4.52 16 3 H 0.05 1.24 7.79 -2.39 -0.02 1.22 16 4 N -0.68 -23.57 5.97 -495.45 -2.96 -26.53 16 5 C 0.06 2.27 5.08 86.30 0.44 2.71 16 6 C 0.23 11.97 3.03 29.84 0.09 12.06 16 7 H 0.01 0.83 8.14 -2.39 -0.02 0.81 16 8 O -0.57 -30.33 12.59 -148.98 -1.88 -32.20 16 9 C -0.59 -32.17 8.76 25.60 0.22 -31.95 16 10 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 11 C 0.02 1.37 5.40 84.66 0.46 1.82 16 12 N -0.90 -54.61 12.84 21.45 0.28 -54.33 16 13 Si 0.96 43.38 29.54 68.60 2.03 45.40 16 14 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 15 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 16 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 17 C -0.26 -6.29 4.81 -20.14 -0.10 -6.38 16 18 C 0.06 1.68 11.46 85.24 0.98 2.66 16 19 N -0.33 -8.94 12.70 -57.02 -0.72 -9.66 16 20 N -0.47 -8.73 7.36 -57.59 -0.42 -9.15 16 21 H 0.45 4.98 8.96 -213.32 -1.91 3.07 16 22 C 0.08 1.40 11.90 83.54 0.99 2.40 16 23 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.05 1.25 7.45 -2.39 -0.02 1.24 16 25 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.33 12.14 8.15 -89.69 -0.73 11.41 16 27 H 0.02 0.87 8.06 -2.39 -0.02 0.85 16 28 H 0.07 2.59 7.44 -2.38 -0.02 2.57 16 29 H 0.35 16.82 9.04 -74.05 -0.67 16.15 16 30 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 31 H 0.18 5.07 8.06 -2.91 -0.02 5.05 16 32 H 0.21 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -68.85 278.70 -1.95 -70.80 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: -2.16 Total: 30.32 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: 3.90 Total: -14.65 kcal Atomic # 7 Polarization: -95.84 SS G_CDS: -3.83 Total: -99.67 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -1.88 Total: -32.20 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -68.85 -1.95 -70.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354603016.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.528 kcal (2) G-P(sol) polarization free energy of solvation -68.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds