Wall clock time and date at job start Mon Mar 30 2020 20:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 119.99755 * 2 1 4 4 H 1.08994 * 109.87347 * 359.00140 * 3 2 1 5 5 O 1.43750 * 110.00533 * 237.90903 * 3 2 1 6 6 C 1.44383 * 106.97139 * 267.02538 * 5 3 2 7 7 C 1.55217 * 103.56708 * 320.00839 * 6 5 3 8 8 C 1.54103 * 109.87526 * 120.00680 * 3 2 1 9 9 H 1.09004 * 110.48531 * 358.73232 * 8 3 2 10 10 C 1.50697 * 110.48841 * 236.21910 * 8 3 2 11 11 O 1.21295 * 119.99940 * 1.84422 * 10 8 3 12 12 N 1.34776 * 120.00414 * 181.56624 * 10 8 3 13 13 C 1.46508 * 119.99402 * 0.27572 * 12 10 8 14 14 C 1.37092 * 120.00595 * 180.27676 * 12 10 8 15 15 H 1.08003 * 119.99619 * 24.06830 * 14 12 10 16 16 C 1.38951 * 120.00260 * 204.07392 * 14 12 10 17 17 N 1.31411 * 119.99824 * 13.04951 * 16 14 12 18 18 Si 1.86799 * 119.99975 * 193.04750 * 16 14 12 19 19 H 1.48499 * 109.47031 * 60.00255 * 18 16 14 20 20 H 1.48503 * 109.47162 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47512 * 299.99933 * 18 16 14 22 22 H 1.08005 * 120.00446 * 179.97438 * 1 2 3 23 23 H 1.08001 * 120.00300 * 359.97438 * 1 2 3 24 24 H 1.07998 * 119.99521 * 180.02562 * 2 1 3 25 25 H 1.09000 * 110.61936 * 78.44221 * 6 5 3 26 26 H 1.09008 * 110.61245 * 201.43836 * 6 5 3 27 27 H 1.09001 * 110.89427 * 278.74850 * 7 6 5 28 28 H 1.09007 * 111.01976 * 155.07698 * 7 6 5 29 29 H 1.09002 * 109.46745 * 86.34675 * 13 12 10 30 30 H 1.09005 * 109.46663 * 206.33821 * 13 12 10 31 31 H 1.08986 * 109.47327 * 326.34202 * 13 12 10 32 32 H 0.96998 * 119.99726 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3611 2.1384 -0.0179 5 8 2.9308 1.3722 -1.1444 6 6 4.2193 0.8726 -0.7264 7 6 4.3955 1.4655 0.6972 8 6 2.9531 1.3965 1.2550 9 1 2.8267 0.5106 1.8775 10 6 2.6311 2.6417 2.0403 11 8 1.7475 3.3834 1.6656 12 7 3.3211 2.9284 3.1619 13 6 4.3883 2.0325 3.6144 14 6 3.0244 4.0583 3.8794 15 1 2.0428 4.5026 3.8055 16 6 3.9866 4.6319 4.7016 17 7 5.2425 4.2578 4.6033 18 14 3.4948 5.9348 5.9466 19 1 2.5058 5.3640 6.8959 20 1 4.6969 6.3841 6.6939 21 1 2.8910 7.0925 5.2393 22 1 -0.5401 -0.9353 -0.0004 23 1 -0.5401 0.9353 0.0004 24 1 1.8499 -0.9353 -0.0004 25 1 4.2149 -0.2167 -0.6889 26 1 5.0044 1.2316 -1.3921 27 1 4.7447 2.4968 0.6483 28 1 5.0730 0.8547 1.2940 29 1 5.3223 2.3018 3.1211 30 1 4.5076 2.1258 4.6939 31 1 4.1291 1.0037 3.3650 32 1 5.9142 4.6585 5.1769 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001627267331.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:47:38 Heat of formation + Delta-G solvation = -72.991179 kcal Electronic energy + Delta-G solvation = -16040.015778 eV Core-core repulsion = 13386.759820 eV Total energy + Delta-G solvation = -2653.255958 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.38252 -39.37657 -36.72377 -34.62069 -34.03040 -32.75425 -29.47672 -28.19746 -26.63033 -24.31921 -23.04556 -20.92606 -20.45703 -18.92987 -18.14515 -17.46229 -16.89273 -16.55549 -16.08744 -15.82626 -15.39432 -14.69259 -14.40623 -14.00877 -13.87988 -13.29237 -13.20866 -12.99958 -12.80016 -12.64372 -12.46156 -12.21951 -12.14849 -12.08251 -11.82788 -11.02690 -10.63667 -10.48402 -10.23890 -9.70044 -8.37401 -6.02258 1.27647 1.36888 1.39151 1.49609 1.97099 2.25390 2.94354 3.04881 3.11799 3.63266 3.76503 3.82932 4.20532 4.23910 4.25870 4.33569 4.59059 4.67089 4.81871 4.84743 4.92759 5.00980 5.08549 5.13881 5.35125 5.41808 5.60419 5.85043 5.95200 6.07485 6.45626 7.13082 7.43061 7.99042 8.65543 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.041746 B = 0.007891 C = 0.007192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.560114 B = 3547.532800 C = 3892.290351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.178 4.178 3 C 0.112 3.888 4 H 0.078 0.922 5 O -0.390 6.390 6 C 0.047 3.953 7 C -0.137 4.137 8 C -0.117 4.117 9 H 0.121 0.879 10 C 0.442 3.558 11 O -0.635 6.635 12 N -0.456 5.456 13 C 0.121 3.879 14 C -0.350 4.350 15 H 0.068 0.932 16 C 0.001 3.999 17 N -0.893 5.893 18 Si 0.988 3.012 19 H -0.266 1.266 20 H -0.267 1.267 21 H -0.279 1.279 22 H 0.131 0.869 23 H 0.082 0.918 24 H 0.138 0.862 25 H 0.093 0.907 26 H 0.108 0.892 27 H 0.049 0.951 28 H 0.114 0.886 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.664 -11.045 -4.282 11.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.196 4.196 3 C 0.054 3.946 4 H 0.096 0.904 5 O -0.310 6.310 6 C -0.029 4.029 7 C -0.175 4.175 8 C -0.138 4.138 9 H 0.139 0.861 10 C 0.231 3.769 11 O -0.523 6.523 12 N -0.174 5.174 13 C -0.022 4.022 14 C -0.478 4.478 15 H 0.086 0.914 16 C -0.202 4.202 17 N -0.531 5.531 18 Si 0.811 3.189 19 H -0.191 1.191 20 H -0.192 1.192 21 H -0.205 1.205 22 H 0.149 0.851 23 H 0.101 0.899 24 H 0.156 0.844 25 H 0.111 0.889 26 H 0.126 0.874 27 H 0.068 0.932 28 H 0.133 0.867 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.412 -10.569 -4.532 11.507 hybrid contribution -0.117 1.055 0.912 1.399 sum 0.296 -9.514 -3.620 10.184 Atomic orbital electron populations 1.24087 0.95809 1.02734 0.98111 1.23326 0.96687 0.97779 1.01831 1.21743 0.92100 0.96837 0.83923 0.90399 1.88889 1.22879 1.85707 1.33498 1.23847 0.85353 0.99679 0.93996 1.23201 0.94367 1.02012 0.97914 1.22463 0.97426 0.96890 0.97057 0.86126 1.20741 0.85150 0.89337 0.81632 1.90448 1.36670 1.54662 1.70521 1.43759 1.31929 1.21270 1.20440 1.21525 0.89575 0.90626 1.00491 1.19574 0.98646 1.05865 1.23711 0.91389 1.26070 0.94281 0.99806 1.00015 1.70039 1.00609 1.43809 1.38625 0.85083 0.78104 0.77786 0.77888 1.19109 1.19158 1.20465 0.85076 0.89911 0.84445 0.88921 0.87361 0.93247 0.86735 0.93249 0.92579 0.91447 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.43 14.32 67.78 0.97 -3.46 16 2 C -0.18 -4.97 8.88 25.64 0.23 -4.74 16 3 C 0.11 4.07 3.44 30.22 0.10 4.17 16 4 H 0.08 3.49 6.10 -2.39 -0.01 3.48 16 5 O -0.39 -13.69 11.18 -148.98 -1.67 -15.36 16 6 C 0.05 1.22 7.67 72.74 0.56 1.78 16 7 C -0.14 -4.28 5.26 31.97 0.17 -4.11 16 8 C -0.12 -4.30 2.13 -10.55 -0.02 -4.32 16 9 H 0.12 3.75 6.94 -2.38 -0.02 3.73 16 10 C 0.44 22.37 6.90 87.66 0.60 22.97 16 11 O -0.63 -37.67 14.97 -3.08 -0.05 -37.72 16 12 N -0.46 -23.88 3.01 -658.88 -1.98 -25.87 16 13 C 0.12 5.20 7.31 127.77 0.93 6.13 16 14 C -0.35 -20.30 9.24 84.04 0.78 -19.52 16 15 H 0.07 4.23 7.44 -2.91 -0.02 4.21 16 16 C 0.00 0.03 5.04 84.93 0.43 0.46 16 17 N -0.89 -47.17 10.83 21.66 0.23 -46.93 16 18 Si 0.99 42.76 29.57 68.60 2.03 44.79 16 19 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 20 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 22 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 23 H 0.08 2.42 7.85 -2.91 -0.02 2.40 16 24 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 25 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.11 2.41 8.14 -2.38 -0.02 2.39 16 27 H 0.05 1.88 7.86 -2.39 -0.02 1.86 16 28 H 0.11 2.84 7.49 -2.38 -0.02 2.82 16 29 H 0.05 2.15 7.44 -2.39 -0.02 2.13 16 30 H 0.06 2.58 6.82 -2.38 -0.02 2.56 16 31 H 0.07 2.28 6.29 -2.39 -0.02 2.26 16 32 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 Total: -1.00 -70.44 266.05 4.42 -66.02 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 1.10 Total: 15.70 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 4.75 Total: -0.63 kcal Atomic # 7 Polarization: -71.05 SS G_CDS: -1.75 Total: -72.80 kcal Atomic # 8 Polarization: -51.36 SS G_CDS: -1.71 Total: -53.07 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -70.44 4.42 -66.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627267331.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.974 kcal (2) G-P(sol) polarization free energy of solvation -70.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds