Wall clock time and date at job start Mon Mar 30 2020 20:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47106 * 2 1 4 4 C 1.53002 * 109.46922 * 295.00288 * 3 2 1 5 5 C 1.53007 * 109.46930 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47226 * 59.99594 * 5 4 3 7 7 N 1.46505 * 109.47167 * 59.99886 * 6 5 4 8 8 C 1.34773 * 119.99828 * 84.99995 * 7 6 5 9 9 O 1.21693 * 119.99868 * 0.02562 * 8 7 6 10 10 C 1.46381 * 120.00063 * 180.02562 * 8 7 6 11 11 H 1.07994 * 119.99543 * 353.93765 * 10 8 7 12 12 C 1.40047 * 119.99611 * 173.94077 * 10 8 7 13 13 N 1.30667 * 120.00458 * 6.14445 * 12 10 8 14 14 Si 1.86807 * 119.99615 * 186.14728 * 12 10 8 15 15 H 1.48504 * 109.46867 * 94.97857 * 14 12 10 16 16 H 1.48494 * 109.47121 * 214.98294 * 14 12 10 17 17 H 1.48506 * 109.47057 * 334.98586 * 14 12 10 18 18 C 1.53006 * 109.47322 * 300.00379 * 6 5 4 19 19 C 1.52997 * 109.47272 * 59.99654 * 18 6 5 20 20 H 1.09007 * 109.46882 * 179.97438 * 1 2 3 21 21 H 1.08990 * 109.47190 * 60.00406 * 1 2 3 22 22 H 1.08995 * 109.47298 * 299.99526 * 1 2 3 23 23 H 1.09003 * 109.47038 * 119.99876 * 2 1 3 24 24 H 1.08998 * 109.47057 * 240.00012 * 2 1 3 25 25 H 1.09002 * 109.46988 * 54.99633 * 3 2 1 26 26 H 1.09002 * 109.46755 * 299.99489 * 4 3 2 27 27 H 1.08996 * 109.47256 * 60.00258 * 4 3 2 28 28 H 1.08997 * 109.47079 * 300.00087 * 5 4 3 29 29 H 1.08995 * 109.46798 * 179.97438 * 5 4 3 30 30 H 1.08997 * 109.47454 * 179.97438 * 6 5 4 31 31 H 0.97000 * 120.00215 * 265.00660 * 7 6 5 32 32 H 0.96999 * 119.99834 * 179.97438 * 13 12 10 33 33 H 1.09002 * 109.46580 * 300.00058 * 18 6 5 34 34 H 1.08992 * 109.47014 * 180.02562 * 18 6 5 35 35 H 1.08999 * 109.47282 * 180.02562 * 19 18 6 36 36 H 1.08997 * 109.47084 * 59.99915 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1265 -1.3074 5 6 2.1457 3.5689 -1.3076 6 6 3.6706 3.5702 -1.1822 7 7 4.2543 2.8453 -2.3136 8 6 4.4788 3.4835 -3.4792 9 8 4.1970 4.6621 -3.5917 10 6 5.0615 2.7592 -4.6099 11 1 5.4018 1.7423 -4.4821 12 6 5.1776 3.3850 -5.8574 13 7 4.8785 4.6506 -5.9839 14 14 5.7602 2.4102 -7.3407 15 1 4.5842 1.9099 -8.0971 16 1 6.5775 3.2857 -8.2184 17 1 6.5817 1.2599 -6.8854 18 6 4.0754 2.8860 0.1252 19 6 3.5649 1.4438 0.1254 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5137 -0.8899 22 1 -0.3633 0.5137 0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.6053 1.9815 0.8418 26 1 2.0699 1.5875 -2.1491 27 1 0.5489 2.1252 -1.3969 28 1 1.7115 4.1081 -0.4658 29 1 1.8577 4.0560 -2.2392 30 1 4.0344 4.5976 -1.1828 31 1 4.4791 1.9060 -2.2239 32 1 4.9593 5.0841 -6.8479 33 1 3.6411 3.4254 0.9670 34 1 5.1616 2.8874 0.2147 35 1 3.8529 0.9565 1.0570 36 1 3.9991 0.9045 -0.7164 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042320249.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:45:32 Heat of formation + Delta-G solvation = -76.314429 kcal Electronic energy + Delta-G solvation = -16126.477564 eV Core-core repulsion = 13608.910594 eV Total energy + Delta-G solvation = -2517.566970 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.12936 -36.62191 -34.05258 -32.40316 -30.95817 -30.36812 -28.22533 -25.95282 -23.43854 -22.14667 -20.65906 -20.13737 -18.19187 -17.27964 -15.44705 -15.12450 -14.81093 -14.10721 -14.03937 -13.78342 -13.34143 -13.22344 -12.50627 -12.22346 -12.00422 -11.87719 -11.66764 -11.26693 -11.12776 -10.97437 -10.91468 -10.71493 -10.66746 -10.38801 -10.22602 -10.02722 -9.65328 -9.51204 -8.80238 -7.53108 -7.37501 -6.14221 -4.58084 3.16033 3.23228 3.26646 4.14518 4.64136 4.82908 4.96128 5.04115 5.05528 5.32059 5.46608 5.53102 5.63810 5.74589 5.83568 5.86078 5.90981 5.96834 6.04172 6.07021 6.09879 6.18788 6.30033 6.34612 6.47861 6.50860 6.69631 6.79997 6.86215 6.97769 7.48187 8.02210 8.22712 8.41401 9.07911 9.63946 10.66021 10.86374 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.034162 B = 0.007017 C = 0.006504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.436489 B = 3989.385445 C = 4303.905320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.085 4.085 4 C -0.109 4.109 5 C -0.127 4.127 6 C 0.155 3.845 7 N -0.758 5.758 8 C 0.556 3.444 9 O -0.582 6.582 10 C -0.548 4.548 11 H 0.066 0.934 12 C 0.089 3.911 13 N -0.769 5.769 14 Si 0.905 3.095 15 H -0.273 1.273 16 H -0.280 1.280 17 H -0.265 1.265 18 C -0.124 4.124 19 C -0.112 4.112 20 H 0.048 0.952 21 H 0.058 0.942 22 H 0.050 0.950 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.378 0.622 32 H 0.267 0.733 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.012 -8.150 10.541 14.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.104 4.104 4 C -0.147 4.147 5 C -0.166 4.166 6 C 0.049 3.951 7 N -0.413 5.413 8 C 0.360 3.640 9 O -0.465 6.465 10 C -0.585 4.585 11 H 0.084 0.916 12 C -0.131 4.131 13 N -0.398 5.398 14 Si 0.729 3.271 15 H -0.199 1.199 16 H -0.205 1.205 17 H -0.189 1.189 18 C -0.162 4.162 19 C -0.150 4.150 20 H 0.067 0.933 21 H 0.077 0.923 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.210 0.790 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.224 -7.098 10.337 13.584 hybrid contribution 0.352 -0.936 -0.712 1.228 sum -4.872 -8.034 9.624 13.450 Atomic orbital electron populations 1.21813 0.96275 1.01036 1.01879 1.21573 0.95626 0.96889 1.01617 1.21181 0.95441 0.95278 0.98453 1.21546 0.99559 0.96483 0.97111 1.21901 0.97025 0.96136 1.01561 1.20436 0.91962 0.96785 0.85946 1.46189 1.69411 1.12861 1.12839 1.18190 0.78243 0.86576 0.81026 1.90587 1.56839 1.16583 1.82510 1.20898 1.43326 1.00229 0.94022 0.91609 1.25682 0.93344 0.94403 0.99635 1.70028 1.35753 1.09852 1.24143 0.86415 0.79094 0.80193 0.81362 1.19876 1.20505 1.18946 1.21794 1.00663 0.95987 0.97780 1.21551 0.95267 0.96968 1.01206 0.93291 0.92333 0.93099 0.92538 0.91960 0.91802 0.91392 0.92835 0.92982 0.91427 0.91012 0.78997 0.92240 0.91861 0.91926 0.92646 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.67 37.16 0.36 -1.22 16 2 C -0.12 -1.34 5.40 -26.73 -0.14 -1.49 16 3 C -0.09 -1.09 2.19 -90.62 -0.20 -1.29 16 4 C -0.11 -1.69 4.80 -26.73 -0.13 -1.82 16 5 C -0.13 -2.28 5.60 -26.73 -0.15 -2.43 16 6 C 0.16 2.99 2.78 -67.93 -0.19 2.80 16 7 N -0.76 -16.89 4.23 -55.21 -0.23 -17.13 16 8 C 0.56 15.86 7.71 -12.99 -0.10 15.76 16 9 O -0.58 -18.91 14.71 5.19 0.08 -18.83 16 10 C -0.55 -15.63 9.53 -35.63 -0.34 -15.97 16 11 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 12 C 0.09 2.51 5.49 -17.37 -0.10 2.41 16 13 N -0.77 -23.34 11.85 55.55 0.66 -22.68 16 14 Si 0.90 20.40 29.56 -169.99 -5.03 15.37 16 15 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 17 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 18 C -0.12 -1.84 5.61 -26.73 -0.15 -1.99 16 19 C -0.11 -1.47 5.03 -26.73 -0.13 -1.61 16 20 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 21 H 0.06 0.64 6.56 -51.93 -0.34 0.30 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.07 1.18 7.60 -51.93 -0.39 0.79 16 27 H 0.05 0.77 6.56 -51.93 -0.34 0.43 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 30 H 0.07 1.59 7.57 -51.93 -0.39 1.20 16 31 H 0.38 7.58 6.85 -40.82 -0.28 7.30 16 32 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.90 6.51 -51.93 -0.34 0.56 16 LS Contribution 284.72 15.07 4.29 4.29 Total: -1.00 -32.85 284.72 -7.36 -40.21 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -5.86 Total: 5.60 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -1.27 Total: -6.84 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.43 Total: -39.81 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.08 Total: -18.83 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.85 -7.36 -40.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042320249.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.101 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds