Wall clock time and date at job start Mon Mar 30 2020 20:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47343 * 2 1 4 4 H 1.08999 * 110.02054 * 53.60331 * 3 2 1 5 5 C 1.54276 * 110.02781 * 292.16325 * 3 2 1 6 6 C 1.54895 * 104.19307 * 217.10424 * 5 3 2 7 7 C 1.54892 * 102.74738 * 37.94365 * 6 5 3 8 8 H 1.08993 * 110.48204 * 203.37184 * 7 6 5 9 9 N 1.46904 * 110.48656 * 80.73534 * 7 6 5 10 10 C 1.46897 * 111.00003 * 91.75249 * 9 7 6 11 11 H 1.08999 * 109.46929 * 33.11763 * 10 9 7 12 12 C 1.52995 * 109.47689 * 273.11505 * 10 9 7 13 13 C 1.50703 * 109.46698 * 153.11310 * 10 9 7 14 14 H 1.07995 * 120.00466 * 5.76939 * 13 10 9 15 15 C 1.37879 * 119.99865 * 185.77150 * 13 10 9 16 16 N 1.31517 * 120.00104 * 7.45388 * 15 13 10 17 17 Si 1.86799 * 120.00266 * 187.45058 * 15 13 10 18 18 H 1.48509 * 109.46792 * 94.98351 * 17 15 13 19 19 H 1.48496 * 109.47210 * 214.98352 * 17 15 13 20 20 H 1.48498 * 109.46864 * 334.98852 * 17 15 13 21 21 C 1.53869 * 110.03287 * 174.99990 * 3 2 1 22 22 H 1.09005 * 110.03429 * 238.56163 * 21 3 2 23 23 C 1.53003 * 110.03569 * 359.97438 * 21 3 2 24 24 H 1.08995 * 109.46999 * 300.00612 * 1 2 3 25 25 H 1.09004 * 109.46758 * 60.00608 * 1 2 3 26 26 H 1.08996 * 109.47293 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46880 * 119.99892 * 2 1 3 28 28 H 1.08995 * 109.46999 * 239.99388 * 2 1 3 29 29 H 1.08998 * 110.48473 * 335.78591 * 5 3 2 30 30 H 1.08996 * 110.48476 * 98.43019 * 5 3 2 31 31 H 1.08997 * 110.75270 * 279.62949 * 6 5 3 32 32 H 1.08995 * 110.74952 * 156.25697 * 6 5 3 33 33 H 1.00895 * 110.99947 * 215.71503 * 9 7 6 34 34 H 1.08994 * 109.47466 * 186.83945 * 12 10 9 35 35 H 1.09007 * 109.46879 * 306.83216 * 12 10 9 36 36 H 1.08993 * 109.47315 * 66.83146 * 12 10 9 37 37 H 0.96999 * 120.00364 * 179.97438 * 16 15 13 38 38 H 1.08999 * 109.46985 * 53.07294 * 23 21 3 39 39 H 1.08991 * 109.47459 * 173.07858 * 23 21 3 40 40 H 1.09007 * 109.46589 * 293.07428 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5915 1.9968 0.8243 5 6 1.7007 2.1229 -1.3424 6 6 2.9291 3.0199 -1.6347 7 6 4.1125 2.1494 -1.1440 8 1 4.9719 2.7750 -0.9029 9 7 4.4713 1.1501 -2.1593 10 6 5.5139 1.6633 -3.0578 11 1 6.1766 2.3277 -2.5033 12 6 4.8624 2.4355 -4.2067 13 6 6.3092 0.5106 -3.6145 14 1 6.0078 -0.5049 -3.4044 15 6 7.4218 0.7525 -4.3922 16 7 7.8750 1.9796 -4.5280 17 14 8.2855 -0.6627 -5.2528 18 1 7.7768 -0.7810 -6.6430 19 1 9.7479 -0.4064 -5.2810 20 1 8.0181 -1.9256 -4.5187 21 6 3.5735 1.4593 0.1260 22 1 3.8693 2.0227 1.0111 23 6 4.1081 0.0283 0.2125 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.5773 1.3771 -2.1276 30 1 0.8000 2.7291 -1.2458 31 1 2.8722 3.9493 -1.0681 32 1 3.0146 3.2217 -2.7024 33 1 4.7591 0.2843 -1.7285 34 1 5.6235 2.7119 -4.9364 35 1 4.1107 1.8081 -4.6859 36 1 4.3889 3.3363 -3.8166 37 1 8.6580 2.1498 -5.0747 38 1 3.7263 -0.5535 -0.6265 39 1 5.1973 0.0446 0.1775 40 1 3.7814 -0.4256 1.1481 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251691505.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:47:49 Heat of formation + Delta-G solvation = -20.919541 kcal Electronic energy + Delta-G solvation = -16648.380651 eV Core-core repulsion = 14269.048878 eV Total energy + Delta-G solvation = -2379.331773 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.21762 -35.19728 -32.91280 -31.37505 -31.00055 -28.04971 -25.97696 -24.89974 -24.54903 -22.47937 -20.30534 -19.13714 -18.04782 -16.52344 -15.74371 -14.96303 -14.59850 -14.38819 -13.81924 -13.35609 -13.05838 -12.64806 -12.54061 -12.14051 -11.93495 -11.46592 -11.25839 -11.16155 -10.93613 -10.86234 -10.74291 -10.46081 -10.33039 -10.12660 -10.09049 -10.05403 -9.91428 -9.81864 -9.59156 -8.72649 -8.39141 -7.13873 -6.01711 -4.04699 3.31195 3.38151 3.41075 4.43351 4.93528 4.96873 4.98873 5.31984 5.37227 5.47949 5.52336 5.60692 5.72740 5.82350 5.90957 5.93549 6.04657 6.10505 6.12256 6.20822 6.30552 6.34388 6.46328 6.54518 6.55689 6.67969 6.70111 6.79725 6.89995 6.95938 7.19157 7.29594 7.55130 7.83070 7.95355 8.25711 8.48400 8.80131 9.09465 9.60754 11.07028 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.037423 B = 0.006985 C = 0.006534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.025133 B = 4007.708156 C = 4283.921029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.081 4.081 4 H 0.059 0.941 5 C -0.106 4.106 6 C -0.120 4.120 7 C 0.088 3.912 8 H 0.037 0.963 9 N -0.683 5.683 10 C 0.210 3.790 11 H 0.007 0.993 12 C -0.119 4.119 13 C -0.519 4.519 14 H 0.058 0.942 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.274 1.274 21 C -0.094 4.094 22 H 0.062 0.938 23 C -0.151 4.151 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.337 0.663 34 H 0.060 0.940 35 H 0.031 0.969 36 H 0.012 0.988 37 H 0.260 0.740 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.720 -1.091 8.604 13.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.100 4.100 4 H 0.078 0.922 5 C -0.143 4.143 6 C -0.158 4.158 7 C -0.023 4.023 8 H 0.055 0.945 9 N -0.319 5.319 10 C 0.102 3.898 11 H 0.024 0.976 12 C -0.177 4.177 13 C -0.558 4.558 14 H 0.076 0.924 15 C -0.139 4.139 16 N -0.528 5.528 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.199 1.199 21 C -0.113 4.113 22 H 0.080 0.920 23 C -0.209 4.209 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.159 0.841 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.031 0.969 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.074 -0.835 8.099 13.745 hybrid contribution 1.367 -0.632 0.039 1.506 sum -9.707 -1.467 8.138 12.752 Atomic orbital electron populations 1.21810 0.96796 1.00898 1.01413 1.21756 0.94788 0.96849 1.02154 1.21736 0.94795 0.95676 0.97745 0.92244 1.22304 0.96805 0.98522 0.96676 1.22648 0.94831 0.96412 1.01892 1.22301 0.95951 0.93630 0.90400 0.94499 1.60790 1.46215 1.05401 1.19449 1.19151 0.86552 0.94247 0.89855 0.97560 1.21732 0.99140 0.96662 1.00216 1.21291 1.09930 0.92726 1.31840 0.92376 1.24922 0.96700 0.95577 0.96692 1.69972 1.24038 1.19323 1.39445 0.86590 0.78568 0.82672 0.80197 1.20685 1.21390 1.19915 1.21948 0.94970 0.96508 0.97920 0.91964 1.21963 1.00747 0.96696 1.01465 0.93440 0.92700 0.93364 0.92315 0.91029 0.90954 0.93340 0.93025 0.90436 0.84109 0.92085 0.94946 0.96892 0.93018 0.90739 0.92857 0.93218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.77 37.16 0.36 -1.27 16 2 C -0.12 -1.45 4.07 -26.73 -0.11 -1.56 16 3 C -0.08 -1.08 2.93 -89.50 -0.26 -1.35 16 4 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 5 C -0.11 -1.54 5.50 -25.06 -0.14 -1.67 16 6 C -0.12 -2.00 6.44 -24.73 -0.16 -2.16 16 7 C 0.09 1.61 3.10 -66.05 -0.20 1.41 16 8 H 0.04 0.75 7.40 -51.93 -0.38 0.37 16 9 N -0.68 -14.44 6.01 -99.22 -0.60 -15.03 16 10 C 0.21 5.34 2.47 -68.87 -0.17 5.17 16 11 H 0.01 0.19 7.34 -51.93 -0.38 -0.19 16 12 C -0.12 -2.94 8.75 37.16 0.33 -2.62 16 13 C -0.52 -14.33 8.48 -34.44 -0.29 -14.63 16 14 H 0.06 1.59 7.66 -52.49 -0.40 1.18 16 15 C 0.06 1.76 5.18 -17.82 -0.09 1.67 16 16 N -0.89 -25.85 12.09 55.43 0.67 -25.18 16 17 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 C -0.09 -1.42 3.47 -89.50 -0.31 -1.73 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 23 C -0.15 -2.20 6.61 37.16 0.25 -1.96 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.60 7.51 -51.93 -0.39 0.21 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.68 6.62 -51.93 -0.34 0.34 16 28 H 0.07 0.98 6.76 -51.93 -0.35 0.63 16 29 H 0.07 1.15 7.76 -51.93 -0.40 0.75 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.43 5.48 -51.93 -0.28 1.15 16 33 H 0.34 7.01 4.70 -39.29 -0.18 6.83 16 34 H 0.06 1.65 6.72 -51.93 -0.35 1.30 16 35 H 0.03 0.77 8.14 -51.92 -0.42 0.35 16 36 H 0.01 0.28 6.12 -51.93 -0.32 -0.04 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 38 H 0.07 1.13 5.27 -51.93 -0.27 0.86 16 39 H 0.05 0.84 7.80 -51.93 -0.41 0.43 16 40 H 0.05 0.62 7.05 -51.93 -0.37 0.25 16 LS Contribution 295.21 15.07 4.45 4.45 Total: -1.00 -27.97 295.21 -8.23 -36.20 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -6.93 Total: 3.83 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: -0.80 Total: -20.70 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.07 Total: -40.21 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.97 -8.23 -36.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251691505.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.282 kcal (2) G-P(sol) polarization free energy of solvation -27.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds